Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold108G30855 Striga asiatica HOM05D005066 ORTHO05D006138 4.0e-209 731.1 351 100.0
MSTRG.27774 Avicennia marina HOM05D005066 ORTHO05D006138 1.8e-180 636.0 350 85.7
Migut.C00955 Erythranthe guttata HOM05D005066 ORTHO05D006138 1.1e-179 633.3 352 86.6
Oeu011330.2 Olea europaea HOM05D005066 ORTHO05D006138 1.2e-173 613.2 353 83.3
Peaxi162Scf00893g00433 Petunia axillaris HOM05D005066 ORTHO05D006138 1.4e-172 609.8 351 81.5
Cc10_g00720 Coffea canephora HOM05D005066 ORTHO05D006138 3.9e-172 608.2 351 81.5
CSS0029951 Camellia sinensis var. sinensis HOM05D005066 ORTHO05D006138 2.6e-171 605.5 352 79.3
Actinidia37971 Actinidia chinensis HOM05D005066 ORTHO05D006138 1.7e-170 602.8 352 79.5
Duzib093G2109 Durio zibethinus HOM05D005066 ORTHO05D006138 2.0e-168 595.9 352 79.3
Hma1.2p1_0507F.1_g168410 Hydrangea macrophylla HOM05D005066 ORTHO05D006138 3.5e-168 595.1 350 78.3
GSVIVG01008680001 Vitis vinifera HOM05D005066 ORTHO05D006138 2.9e-167 592.0 352 78.7
Thecc.08G057800 Theobroma cacao HOM05D005066 ORTHO05D006138 5.0e-167 591.3 352 79.3
Gohir.A05G254700 Gossypium hirsutum HOM05D005066 ORTHO05D006138 8.5e-167 590.5 352 78.1
THA.LOC104813757 Tarenaya hassleriana HOM05D005066 ORTHO05D006138 8.5e-167 590.5 352 78.7
Eucgr.F03549 Eucalyptus grandis HOM05D005066 ORTHO05D006138 1.4e-166 589.7 352 76.7
Nitab4.5_0000588g0150 Nicotiana tabacum HOM05D005066 ORTHO05D006138 1.9e-166 589.3 339 81.1
Prupe.1G355000 Prunus persica HOM05D005066 ORTHO05D006138 5.5e-166 587.8 352 76.4
Manes.18G005800 Manihot esculenta HOM05D005066 ORTHO05D006138 1.2e-165 586.6 351 77.2
SalBow7G4394 Salvia bowleyana HOM05D005066 ORTHO05D006138 2.1e-165 585.9 407 72.0
Dinv31933 Davidia involucrata HOM05D005066 ORTHO05D006138 3.6e-165 585.1 337 80.1
Solyc04g082300.2 Solanum lycopersicum HOM05D005066 ORTHO05D006138 6.1e-165 584.3 351 78.3
Sopen04g035920 Solanum pennellii HOM05D005066 ORTHO05D006138 6.1e-165 584.3 351 78.3
PGSC0003DMG400009976 Solanum tuberosum HOM05D005066 ORTHO05D006138 1.0e-164 583.6 351 78.3
Ciclev10001617m.g Citrus clementina HOM05D005066 ORTHO05D006138 3.0e-164 582.0 361 76.5
Thhalv10008062m.g Eutrema salsugineum HOM05D005066 ORTHO05D006138 3.0e-164 582.0 350 77.7
AL1G33470 Arabidopsis lyrata HOM05D005066 ORTHO05D006138 5.2e-164 581.3 350 78.3
TWI36G1160 Tripterygium wilfordii HOM05D005066 ORTHO05D006138 3.3e-163 578.6 355 75.2
BcaB07g32052 Brassica carinata HOM05D005066 ORTHO05D006138 7.4e-163 577.4 349 77.7
Lj4C805G13 Lonicera japonica HOM05D005066 ORTHO05D006138 7.4e-163 577.4 353 78.2
Potri.005G249800 Populus trichocarpa HOM05D005066 ORTHO05D006138 7.4e-163 577.4 352 76.7
AT1G20540 Arabidopsis thaliana HOM05D005066 ORTHO05D006138 1.3e-162 576.6 350 76.9
RcHm_v2.0_Chr6g0304181 Rosa chinensis HOM05D005066 ORTHO05D006138 1.3e-162 576.6 352 74.4
Rhsim06G0007900 Rhododendron simsii HOM05D005066 ORTHO05D006138 2.2e-162 575.9 374 73.8
CiPaw.07G139500 Carya illinoinensis HOM05D005066 ORTHO05D006138 8.2e-162 573.9 352 76.1
A06p16540 Brassica napus HOM05D005066 ORTHO05D006138 1.4e-161 573.2 350 76.6
BraA06t24760Z Brassica rapa HOM05D005066 ORTHO05D006138 1.4e-161 573.2 350 76.6
Cpa.g.sc26.207 Carica papaya HOM05D005066 ORTHO05D006138 1.4e-161 573.2 352 75.0
MD15G1002700 Malus domestica HOM05D005066 ORTHO05D006138 3.1e-161 572.0 351 74.9
Cfa014063 Carpinus fangiana HOM05D005066 ORTHO05D006138 4.1e-161 571.6 352 75.0
Carub.0001s2001 Capsella rubella HOM05D005066 ORTHO05D006138 5.3e-161 571.2 350 76.3
Sp1g18250 Schrenkiella parvula HOM05D005066 ORTHO05D006138 7.0e-161 570.9 350 76.0
Lalb_Chr23g0265821 Lupinus albus HOM05D005066 ORTHO05D006138 9.1e-161 570.5 351 74.6
FvH4_2g37550 Fragaria vesca HOM05D005066 ORTHO05D006138 2.0e-160 569.3 352 73.9
Gorai.009G267800 Gossypium raimondii HOM05D005066 ORTHO05D006138 4.5e-160 568.2 339 77.6
Aa31LG7G4800 Aethionema arabicum HOM05D005066 ORTHO05D006138 7.7e-160 567.4 352 76.4
PGR031G0259 Punica granatum HOM05D005066 ORTHO05D006138 7.7e-160 567.4 351 74.1
unitig_26.g9893 Utricularia gibba HOM05D005066 ORTHO05D006138 7.7e-160 567.4 351 76.4
FAN15G0307 Fragaria x ananassa HOM05D005066 ORTHO05D006138 1.3e-159 566.6 352 73.6
FAN20G0881 Fragaria x ananassa HOM05D005066 ORTHO05D006138 1.3e-159 566.6 352 73.9
Lsat_1_v5_gn_2_6481 Lactuca sativa HOM05D005066 ORTHO05D006138 1.3e-159 566.6 352 76.7
DCAR_013911 Daucus carota HOM05D005066 ORTHO05D006138 1.7e-159 566.2 336 78.6
Ca_15439_v3 Cicer arietinum L. HOM05D005066 ORTHO05D006138 1.1e-158 563.5 351 72.6
Thhalv10018792m.g Eutrema salsugineum HOM05D005066 ORTHO05D006138 1.9e-158 562.8 351 74.6
Aa31LG4G6350 Aethionema arabicum HOM05D005066 ORTHO05D006138 2.5e-158 562.4 351 74.4
Sp5g31400 Schrenkiella parvula HOM05D005066 ORTHO05D006138 2.5e-158 562.4 351 74.4
BcaC08g47273 Brassica carinata HOM05D005066 ORTHO05D006138 5.5e-158 561.2 351 74.6
BolC6t40062H Brassica oleracea HOM05D005066 ORTHO05D006138 5.5e-158 561.2 351 74.6
Potri.002G011200 Populus trichocarpa HOM05D005066 ORTHO05D006138 5.5e-158 561.2 355 74.1
MBI05_g05143_MAGBIO Magnolia biondii HOM05D005066 ORTHO05D006138 7.2e-158 560.8 352 73.6
CsaV3_6G031630 Cucumis sativus L. HOM05D005066 ORTHO05D006138 1.2e-157 560.1 350 74.3
HanXRQChr14g0428271 Helianthus annuus HOM05D005066 ORTHO05D006138 2.1e-157 559.3 350 76.0
ECA238G2025 Erigeron canadensis HOM05D005066 ORTHO05D006138 1.0e-156 557.0 352 74.4
Lj1g0027661 Lotus japonicus HOM05D005066 ORTHO05D006138 1.0e-156 557.0 351 72.1
vmacro21822 Vaccinium macrocarpon HOM05D005066 ORTHO05D006138 6.7e-156 554.3 319 79.6
AL2G36340 Arabidopsis lyrata HOM05D005066 ORTHO05D006138 8.8e-156 553.9 351 73.2
arahy.Tifrunner.gnm1.ann1.B8YF15 Arachis hypogaea HOM05D005066 ORTHO05D006138 8.8e-156 553.9 338 74.3
VMungo1309G2329 Vigna mungo HOM05D005066 ORTHO05D006138 1.5e-155 553.1 351 71.2
arahy.Tifrunner.gnm1.ann1.76XKSK Arachis hypogaea HOM05D005066 ORTHO05D006138 2.0e-155 552.7 336 74.4
PSO210G7270 Papaver somniferum HOM05D005066 ORTHO05D006138 2.0e-155 552.7 352 72.7
TPR.G38213 Trifolium pratense HOM05D005066 ORTHO05D006138 3.3e-155 552.0 351 71.5
MD08G1003000 Malus domestica HOM05D005066 ORTHO05D006138 5.7e-155 551.2 351 72.9
Aqoxy5G01046 Aquilegia oxysepala HOM05D005066 ORTHO05D006138 7.5e-155 550.8 347 73.8
Carub.0002s2315 Capsella rubella HOM05D005066 ORTHO05D006138 7.5e-155 550.8 351 72.9
Glyma.06G018800 Glycine max HOM05D005066 ORTHO05D006138 2.8e-154 548.9 351 71.2
CANSAT25G3513 Cannabis sativa HOM05D005066 ORTHO05D006138 6.3e-154 547.7 354 73.2
PSO170G0128 Papaver somniferum HOM05D005066 ORTHO05D006138 8.3e-154 547.4 351 72.1
Phvul.009G010100 Phaseolus vulgaris HOM05D005066 ORTHO05D006138 1.1e-153 547.0 351 70.4
Medtr3g115200 Medicago truncatula HOM05D005066 ORTHO05D006138 1.8e-153 546.2 351 71.2
Sed0022458 Sechium edule HOM05D005066 ORTHO05D006138 5.3e-153 544.7 350 73.1
C06p50230 Brassica napus HOM05D005066 ORTHO05D006138 1.0e-151 540.4 351 72.6
COL.COLO4_03999 Corchorus olitorius HOM05D005066 ORTHO05D006138 1.3e-151 540.0 319 78.4
BraA07t31713Z Brassica rapa HOM05D005066 ORTHO05D006138 6.5e-151 537.7 351 72.4
A07p41830 Brassica napus HOM05D005066 ORTHO05D006138 9.4e-150 533.9 351 72.1
AT1G76260 Arabidopsis thaliana HOM05D005066 ORTHO05D006138 2.1e-149 532.7 351 71.8
Nn6g31745 Nelumbo nucifera HOM05D005066 ORTHO05D006138 8.0e-149 530.8 339 72.9
FAN27G0843 Fragaria x ananassa HOM05D005066 ORTHO05D006138 1.8e-148 529.6 358 68.7
Hund05118 Selenicereus undatus HOM05D005066 ORTHO05D006138 4.0e-148 528.5 337 73.9
AUR62043922 Chenopodium quinoa HOM05D005066 ORTHO05D006138 4.4e-147 525.0 352 71.9
CANSAT54G1628 Cannabis sativa HOM05D005066 ORTHO05D006138 2.2e-146 522.7 352 69.9
CARHR069820 Cardamine hirsuta HOM05D005066 ORTHO05D006138 2.0e-144 516.2 351 69.2
Sabra05G0193300 Salix brachista HOM05D005066 ORTHO05D006138 2.5e-142 509.2 381 64.6
AUR62036885 Chenopodium quinoa HOM05D005066 ORTHO05D006138 1.4e-140 503.4 346 69.9
Glyma.04G018500 Glycine max HOM05D005066 ORTHO05D006138 1.2e-139 500.4 318 71.1
Sc15g0004490 Simmondsia chinensis HOM05D005066 ORTHO05D006138 3.4e-139 498.8 319 72.7
Gohir.D05G256300 Gossypium hirsutum HOM05D005066 ORTHO05D006138 7.5e-139 497.7 293 77.8
BcaC05g25960 Brassica carinata HOM05D005066 ORTHO05D006138 5.4e-137 491.5 295 77.3
C05p19110 Brassica napus HOM05D005066 ORTHO05D006138 9.2e-137 490.7 305 75.1
BolC5t30611H Brassica oleracea HOM05D005066 ORTHO05D006138 9.2e-137 490.7 305 75.1
ATR0661G259 Amborella trichopoda HOM05D005066 ORTHO05D006138 2.7e-136 489.2 337 66.2
Os08g0554000 Oryza sativa ssp. japonica HOM05D005066 ORTHO05D006138 7.8e-136 487.6 352 62.8
Zm00001eb039840 Zea mays HOM05D005066 ORTHO05D006138 5.6e-134 481.5 353 63.7
BcaC08g47124 Brassica carinata HOM05D005066 ORTHO05D006138 1.2e-131 473.8 318 70.4
TAR381G1664 Trochodendron aralioides HOM05D005066 ORTHO05D006138 1.4e-129 466.8 321 70.1
Zm00001eb180420 Zea mays HOM05D005066 ORTHO05D006138 2.0e-128 463.0 352 60.5
BNapus_Darmor_BZH_scaffold_170p00070 Brassica napus HOM05D005066 ORTHO05D006138 7.8e-128 461.1 315 69.8
EL10Ac1g01978 Beta vulgaris HOM05D005066 ORTHO05D006138 3.3e-126 455.7 296 71.6
Ah.13g072510 Amaranthus hybridus HOM05D005066 ORTHO05D006138 8.9e-124 447.6 394 57.9
Psat5g011560 Pisum sativum HOM05D005066 ORTHO05D006138 3.7e-122 442.2 269 73.2
MELO3C026544.2 Cucumis melo HOM05D005066 ORTHO05D006138 1.8e-116 423.3 255 75.7
CSS0013002 Camellia sinensis var. sinensis HOM05D005066 ORTHO05D006138 2.1e-112 409.8 353 58.6
QL02p013964 Quercus lobata HOM05D005066 ORTHO05D006138 8.4e-106 387.9 271 66.4
Haze_22764 Corylus avellana HOM05D005066 ORTHO05D006138 1.3e-103 380.6 223 78.5
AUR62043921 Chenopodium quinoa HOM05D005066 ORTHO05D006138 6.2e-101 371.7 201 84.1
Atru.chr13.151 Acer truncatum HOM05D005066 ORTHO05D006138 4.0e-92 342.4 192 82.8
HPP92_008373 Vanilla planifolia HOM05D005066 ORTHO05D006138 4.5e-83 312.4 229 61.6
AagrBONN_evm.TU.Sc2ySwM_362.948 Anthoceros agrestis HOM05D005066 ORTHO05D006138 5.8e-83 312.0 355 42.0
Mapoly0054s0060 Marchantia polymorpha HOM05D005066 ORTHO05D006138 1.6e-80 303.9 358 41.3
CARHR021010 Cardamine hirsuta HOM05D005066 ORTHO05D006138 2.3e-79 300.1 203 69.5
Actinidia29788 Actinidia chinensis HOM05D005066 ORTHO05D006138 5.7e-78 295.4 213 63.4
SMO118G0316 Selaginella moellendorffii HOM05D005066 ORTHO05D006138 1.4e-73 280.8 353 39.1
ClCG08G009490 Citrullus lanatus HOM05D005066 ORTHO05D006138 2.7e-72 276.6 158 79.7
SHI08001 Sapria himalayana HOM05D005066 ORTHO05D006138 1.3e-66 257.7 199 62.3
AUR62043554 Chenopodium quinoa HOM05D005066 ORTHO05D006138 5.0e-58 229.2 144 71.5
Cre02.g109400 Chlamydomonas reinhardtii HOM05D005066 ORTHO05D006138 4.0e-47 193.0 374 30.2
ClCG00G005440 Citrullus lanatus HOM05D005066 ORTHO05D006138 5.2e-47 192.6 126 71.4
ClCG08G009550 Citrullus lanatus HOM05D005066 ORTHO05D006138 2.6e-46 190.3 125 69.6
CDE02G3878 Ceratophyllum demersum HOM05D005066 ORTHO05D006138 1.7e-45 187.6 108 79.6
QL02p013958 Quercus lobata HOM05D005066 ORTHO05D006138 3.8e-42 176.4 87 94.3
Duzib116G0540 Durio zibethinus HOM05D005066 ORTHO05D006138 2.7e-35 153.7 118 63.6
MBI05_g41554_MAGBIO Magnolia biondii HOM05D005066 ORTHO05D006138 1.0e-34 151.8 129 55.8
PRCOL_00000380 Prasinoderma coloniale HOM05D005066 ORTHO05D006138 2.1e-32 144.1 306 29.1
SEGI_37952 Sequoiadendron giganteum HOM05D005066 ORTHO05D006138 2.3e-26 124.0 82 65.9
CDE04G2988 Ceratophyllum demersum HOM05D005066 ORTHO05D006138 6.6e-26 122.5 72 73.6
vmacro11237 Vaccinium macrocarpon HOM05D005066 ORTHO05D006138 6.4e-21 105.9 69 71.0
CBR_g17938 Chara braunii HOM05D005066 ORTHO05D006138 1.4e-20 104.8 215 29.3
vmacro11236 Vaccinium macrocarpon HOM05D005066 ORTHO05D006138 1.4e-20 104.8 93 57.0
Haze_22758 Corylus avellana HOM05D005066 ORTHO05D006138 5.4e-20 102.8 77 66.2
SGA_v2.0_scaffold275G46594 Striga asiatica HOM05D005066 ORTHO05D406259 2.6e-14 84.0 168 39.3
Actinidia07458 Actinidia chinensis HOM05D005066 ORTHO05D006138 7.5e-14 82.4 44 81.8
Actinidia09068 Actinidia chinensis HOM05D005066 ORTHO05D006138 7.5e-14 82.4 54 74.1
Peaxi162Scf00362g00643 Petunia axillaris HOM05D000347 ORTHO05D001997 9.8e-14 82.0 171 28.7
SEGI_07968 Sequoiadendron giganteum HOM05D005066 ORTHO05D006138 1.3e-13 81.6 56 64.3
arahy.Tifrunner.gnm1.ann1.FBZU85 Arachis hypogaea HOM05D005066 ORTHO05D006138 1.9e-12 77.8 146 34.9
MD10G1124300 Malus domestica HOM05D000347 ORTHO05D001997 7.0e-12 75.9 234 20.5
DCAR_013994 Daucus carota HOM05D000347 ORTHO05D001997 1.2e-11 75.1 296 21.3
Glyma.12G033100 Glycine max HOM05D000347 ORTHO05D001997 3.0e-10 70.5 152 25.7
Solyc01g111590.4 Solanum lycopersicum HOM05D000347 ORTHO05D001997 3.0e-10 70.5 159 27.0
arahy.Tifrunner.gnm1.ann1.7RQ6TB Arachis hypogaea HOM05D005066 ORTHO05D006138 3.3e-09 67.0 60 46.7
Nitab4.5_0000283g0360 Nicotiana tabacum HOM05D000347 ORTHO05D001997 3.3e-09 67.0 149 26.2
Nitab4.5_0003914g0030 Nicotiana tabacum HOM05D000347 ORTHO05D001997 3.3e-09 67.0 149 26.2
Glyma.11G091500 Glycine max HOM05D000347 ORTHO05D001997 4.3e-09 66.6 249 22.1
AUR62038170 Chenopodium quinoa HOM05D000030 ORTHO05D000031 9.5e-09 65.5 42 64.3
PGSC0003DMG400006171 Solanum tuberosum HOM05D000347 ORTHO05D001997 1.2e-08 65.1 158 26.6
vmacro21823 Vaccinium macrocarpon HOM05D005066 ORTHO05D006138 1.6e-08 64.7 33 75.8
AUR62018933 Chenopodium quinoa HOM05D000030 ORTHO05D000031 8.1e-08 62.4 42 61.9
CAN.G588.81 Capsicum annuum HOM05D000347 ORTHO05D001997 1.4e-07 61.6 152 27.0
vmacro21824 Vaccinium macrocarpon HOM05D004614 ORTHO05D005339 2.3e-07 60.8 48 64.6
SEGI_12583 Sequoiadendron giganteum HOM05D005066 ORTHO05D006138 3.1e-07 60.5 68 42.6
Zm00001eb329590 Zea mays HOM05D001978 ORTHO05D003036 5.2e-07 59.7 263 21.3
Gohir.A01G002500 Gossypium hirsutum HOM05D000347 ORTHO05D001997 8.9e-07 58.9 165 23.6
Gorai.002G002900 Gossypium raimondii HOM05D000347 ORTHO05D001997 8.9e-07 58.9 165 23.6
FvH4_2g01180 Fragaria vesca HOM05D000347 ORTHO05D001997 1.2e-06 58.5 148 23.0
FAN24G3508 Fragaria x ananassa HOM05D000347 ORTHO05D001997 1.2e-06 58.5 148 23.0
Zm00001eb110650 Zea mays HOM05D001978 ORTHO05D003036 1.2e-06 58.5 260 20.4
Nn4g22810 Nelumbo nucifera HOM05D005066 ORTHO05D006138 1.5e-06 58.2 41 58.5
Cre02.g109150 Chlamydomonas reinhardtii HOM05D005066 ORTHO05D006138 2.6e-06 57.4 57 36.8
FAN15G3271 Fragaria x ananassa HOM05D000347 ORTHO05D001997 3.4e-06 57.0 148 23.0
FAN20G0646 Fragaria x ananassa HOM05D000347 ORTHO05D001997 3.4e-06 57.0 148 23.0


User provided reference genes

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