Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold106G30556 Striga asiatica HOM05D006173 ORTHO05D007685 0.0e+00 1075.1 521 100.0
SalBow1G0987 Salvia bowleyana HOM05D006173 ORTHO05D007685 6.1e-169 598.2 569 59.1
Migut.K00169 Erythranthe guttata HOM05D006173 ORTHO05D007685 2.9e-163 579.3 455 66.8
MSTRG.10773 Avicennia marina HOM05D006173 ORTHO05D007685 5.1e-160 568.5 455 65.1
Oeu060754.2 Olea europaea HOM05D006173 ORTHO05D007685 6.9e-157 558.1 464 62.7
Actinidia17973 Actinidia chinensis HOM05D006173 ORTHO05D007685 8.8e-144 514.6 455 58.2
Peaxi162Scf00937g00117 Petunia axillaris HOM05D006173 ORTHO05D007685 3.5e-140 502.7 451 57.0
Hma1.2p1_0044F.1_g026020 Hydrangea macrophylla HOM05D006173 ORTHO05D007685 1.0e-139 501.1 475 55.6
Cc06_g22820 Coffea canephora HOM05D006173 ORTHO05D007685 3.8e-139 499.2 478 55.4
Ciclev10011725m.g Citrus clementina HOM05D006173 ORTHO05D007685 1.8e-136 490.3 458 55.0
Manes.10G077600 Manihot esculenta HOM05D006173 ORTHO05D007685 8.3e-134 481.5 462 55.4
EL10Ac3g07343 Beta vulgaris HOM05D006173 ORTHO05D007685 1.1e-133 481.1 451 56.1
Haze_20298 Corylus avellana HOM05D006173 ORTHO05D007685 2.4e-133 479.9 484 51.9
Gohir.D11G320800 Gossypium hirsutum HOM05D006173 ORTHO05D007685 2.7e-132 476.5 457 54.9
Cpa.g.sc33.197 Carica papaya HOM05D006173 ORTHO05D007685 7.7e-132 474.9 461 53.4
Potri.016G030400 Populus trichocarpa HOM05D006173 ORTHO05D007685 1.3e-131 474.2 463 54.0
Gorai.007G351000 Gossypium raimondii HOM05D006173 ORTHO05D007685 2.2e-131 473.4 459 54.9
Thecc.05G131000 Theobroma cacao HOM05D006173 ORTHO05D007685 2.9e-131 473.0 461 54.2
Cfa019941 Carpinus fangiana HOM05D006173 ORTHO05D007685 6.5e-131 471.9 468 52.6
Gohir.A11G305400 Gossypium hirsutum HOM05D006173 ORTHO05D007685 8.5e-131 471.5 457 54.3
Dinv10196 Davidia involucrata HOM05D006173 ORTHO05D007685 1.9e-130 470.3 464 54.1
Thhalv10005968m.g Eutrema salsugineum HOM05D006173 ORTHO05D007685 4.2e-130 469.2 460 54.6
Prupe.7G021600 Prunus persica HOM05D006173 ORTHO05D007685 1.0e-128 464.5 460 54.3
AUR62020996 Chenopodium quinoa HOM05D006173 ORTHO05D007685 2.3e-128 463.4 464 53.0
BcaC07g40002 Brassica carinata HOM05D006173 ORTHO05D007685 8.8e-128 461.5 460 53.3
FAN10G0117 Fragaria x ananassa HOM05D006173 ORTHO05D007685 1.2e-127 461.1 468 53.2
Duzib106G1718 Durio zibethinus HOM05D006173 ORTHO05D007685 1.5e-127 460.7 459 53.6
PSO541G4485 Papaver somniferum HOM05D006173 ORTHO05D007685 1.5e-127 460.7 460 53.9
PGSC0003DMG400017881 Solanum tuberosum HOM05D006173 ORTHO05D007685 1.5e-127 460.7 455 53.0
BcaC07g40109 Brassica carinata HOM05D006173 ORTHO05D007685 3.4e-127 459.5 466 52.1
BolC8t50833H Brassica oleracea HOM05D006173 ORTHO05D007685 3.4e-127 459.5 473 52.2
PSO675G1003 Papaver somniferum HOM05D006173 ORTHO05D007685 3.4e-127 459.5 459 54.0
A09p49770 Brassica napus HOM05D006173 ORTHO05D007685 7.5e-127 458.4 471 51.6
BraA09t40430Z Brassica rapa HOM05D006173 ORTHO05D007685 7.5e-127 458.4 471 51.6
C08p32150 Brassica napus HOM05D006173 ORTHO05D007685 2.8e-126 456.4 473 51.8
Hund19061 Selenicereus undatus HOM05D006173 ORTHO05D007685 4.8e-126 455.7 433 54.3
Sopen08g011280 Solanum pennellii HOM05D006173 ORTHO05D007685 4.8e-126 455.7 455 52.5
CsaV3_3G039830 Cucumis sativus L. HOM05D006173 ORTHO05D007685 2.4e-125 453.4 461 53.6
Lsat_1_v5_gn_9_32341 Lactuca sativa HOM05D006173 ORTHO05D007685 2.4e-125 453.4 441 54.4
Atru.chr1.1516 Acer truncatum HOM05D006173 ORTHO05D007685 4.1e-125 452.6 466 52.4
arahy.Tifrunner.gnm1.ann1.NS6SL1 Arachis hypogaea HOM05D006173 ORTHO05D007685 5.4e-125 452.2 469 51.4
Solyc08g016801.1 Solanum lycopersicum HOM05D006173 ORTHO05D007685 5.4e-125 452.2 455 52.1
Lj1g0020171 Lotus japonicus HOM05D006173 ORTHO05D007685 1.2e-124 451.1 470 52.1
TWI74G0774 Tripterygium wilfordii HOM05D006173 ORTHO05D007685 2.0e-124 450.3 469 52.5
VMungo0331G1996 Vigna mungo HOM05D006173 ORTHO05D007685 4.5e-124 449.1 442 54.1
ECA247G0085 Erigeron canadensis HOM05D006173 ORTHO05D007685 7.7e-124 448.4 456 53.1
Sabra16G0033900 Salix brachista HOM05D006173 ORTHO05D007685 1.7e-123 447.2 513 48.5
vmacro07758 Vaccinium macrocarpon HOM05D006173 ORTHO05D007685 2.3e-123 446.8 566 44.9
PGR142G0634 Punica granatum HOM05D006173 ORTHO05D007685 2.9e-123 446.4 466 52.4
CiPaw.10G124100 Carya illinoinensis HOM05D006173 ORTHO05D007685 5.0e-123 445.7 463 51.2
ClCG10G016510 Citrullus lanatus HOM05D006173 ORTHO05D007685 5.0e-123 445.7 503 49.7
Medtr7g088540 Medicago truncatula HOM05D006173 ORTHO05D007685 5.0e-123 445.7 473 50.7
CSS0033436 Camellia sinensis var. sinensis HOM05D006173 ORTHO05D007685 6.6e-123 445.3 466 52.4
Aa31LG10G11760 Aethionema arabicum HOM05D006173 ORTHO05D007685 1.0e-120 438.0 533 46.5
FvH4_7g04320 Fragaria vesca HOM05D006173 ORTHO05D007685 3.0e-120 436.4 457 51.9
arahy.Tifrunner.gnm1.ann1.TSE1DU Arachis hypogaea HOM05D006173 ORTHO05D007685 6.8e-120 435.3 558 45.0
Sp5g05690 Schrenkiella parvula HOM05D006173 ORTHO05D007685 2.6e-119 433.3 467 51.2
MELO3C009724.2 Cucumis melo HOM05D006173 ORTHO05D007685 3.4e-119 433.0 467 51.2
AT3G56900 Arabidopsis thaliana HOM05D006173 ORTHO05D007685 7.5e-119 431.8 462 50.9
Zm00001eb405260 Zea mays HOM05D006173 ORTHO05D007685 7.5e-119 431.8 461 49.2
AL5G38300 Arabidopsis lyrata HOM05D006173 ORTHO05D007685 9.8e-119 431.4 462 51.1
Carub.0005s2364 Capsella rubella HOM05D006173 ORTHO05D007685 2.8e-118 429.9 466 51.1
Glyma.03G120400 Glycine max HOM05D006173 ORTHO05D007685 2.8e-118 429.9 461 50.8
CARHR167050 Cardamine hirsuta HOM05D006173 ORTHO05D007685 3.7e-118 429.5 466 50.9
Glyma.19G125000 Glycine max HOM05D006173 ORTHO05D007685 6.3e-118 428.7 461 51.0
MD12G1112000 Malus domestica HOM05D006173 ORTHO05D007685 8.3e-118 428.3 563 44.8
Sed0007984 Sechium edule HOM05D006173 ORTHO05D007685 8.3e-118 428.3 463 51.6
FAN01G1644 Fragaria x ananassa HOM05D006173 ORTHO05D007685 1.1e-117 427.9 561 44.6
THA.LOC104814894 Tarenaya hassleriana HOM05D006173 ORTHO05D007685 1.8e-117 427.2 458 50.2
Os12g0129400 Oryza sativa ssp. japonica HOM05D006173 ORTHO05D007685 4.1e-117 426.0 459 48.4
Phvul.001G116600 Phaseolus vulgaris HOM05D006173 ORTHO05D007685 5.4e-117 425.6 461 49.9
Os11g0132700 Oryza sativa ssp. japonica HOM05D006173 ORTHO05D007685 1.0e-115 421.4 459 47.7
Eucgr.K01689 Eucalyptus grandis HOM05D006173 ORTHO05D007685 1.5e-114 417.5 470 47.9
TAR623G0939 Trochodendron aralioides HOM05D006173 ORTHO05D007685 1.9e-114 417.2 423 54.1
SEGI_22413 Sequoiadendron giganteum HOM05D006173 ORTHO05D007685 2.0e-111 407.1 493 48.3
HanXRQChr14g0457301 Helianthus annuus HOM05D006173 ORTHO05D007685 4.9e-110 402.5 455 49.2
TPR.G27968 Trifolium pratense HOM05D006173 ORTHO05D007685 4.3e-106 389.4 431 49.7
FAN06G1001 Fragaria x ananassa HOM05D006173 ORTHO05D007685 4.7e-105 386.0 478 47.7
CDE02G3082 Ceratophyllum demersum HOM05D006173 ORTHO05D007685 2.0e-103 380.6 437 47.6
Aqoxy3G01734 Aquilegia oxysepala HOM05D006173 ORTHO05D007685 1.9e-101 374.0 367 54.2
Sc19g0007880 Simmondsia chinensis HOM05D006173 ORTHO05D007685 5.4e-101 372.5 432 48.1
RhsimUnG0020600 Rhododendron simsii HOM05D006173 ORTHO05D007685 3.4e-95 353.2 511 42.3
AUR62018437 Chenopodium quinoa HOM05D006173 ORTHO05D007685 3.7e-94 349.7 437 46.2
MBI19_g25019_MAGBIO Magnolia biondii HOM05D006173 ORTHO05D007685 8.6e-91 338.6 397 48.6
Mapoly0010s0124 Marchantia polymorpha HOM05D006173 ORTHO05D007685 6.2e-89 332.4 496 39.5
VMungo1383G1641 Vigna mungo HOM05D006173 ORTHO05D007685 6.8e-88 328.9 406 46.6
Psat3g082320 Pisum sativum HOM05D006173 ORTHO05D007685 3.6e-81 306.6 392 45.2
SMO116G0186 Selaginella moellendorffii HOM05D006173 ORTHO05D007685 1.8e-80 304.3 488 37.7
SMO133G0039 Selaginella moellendorffii HOM05D006173 ORTHO05D007685 2.4e-80 303.9 488 37.7
Pp3c11_18220 Physcomitrium patens HOM05D006173 ORTHO05D007685 2.9e-78 297.0 475 35.4
Nitab4.5_0003840g0020 Nicotiana tabacum HOM05D006173 ORTHO05D007685 7.3e-74 282.3 291 52.2
GSVIVG01025850001 Vitis vinifera HOM05D006173 ORTHO05D007685 4.3e-66 256.5 213 62.0
RcHm_v2.0_Chr1g0329271 Rosa chinensis HOM05D006173 ORTHO05D007685 1.6e-65 254.6 214 62.1
Lalb_Chr22g0358001 Lupinus albus HOM05D006173 ORTHO05D007685 4.8e-65 253.1 213 62.0
MD14G1101100 Malus domestica HOM05D006173 ORTHO05D007685 8.1e-65 252.3 213 61.5
Solyc08g016808.1 Solanum lycopersicum HOM05D006173 ORTHO05D007685 1.8e-64 251.1 362 41.2
Lj1A24G66 Lonicera japonica HOM05D006173 ORTHO05D007685 8.4e-62 242.3 192 64.1
Lj1A24G67 Lonicera japonica HOM05D006173 ORTHO05D007685 1.4e-61 241.5 258 51.6
ATR0307G134 Amborella trichopoda HOM05D006173 ORTHO05D007685 2.5e-61 240.7 215 56.3
Ca_08352_v3 Cicer arietinum L. HOM05D006173 ORTHO05D007685 7.1e-61 239.2 338 41.4
Solyc08g036600.3 Solanum lycopersicum HOM05D006173 ORTHO05D007685 1.6e-60 238.0 203 56.2
Nitab4.5_0000211g0120 Nicotiana tabacum HOM05D006173 ORTHO05D007685 2.3e-59 234.2 296 45.3
RcHm_v2.0_Chr1g0329281 Rosa chinensis HOM05D006173 ORTHO05D007685 2.3e-59 234.2 219 52.5
QL07p014498 Quercus lobata HOM05D006173 ORTHO05D007685 1.5e-58 231.5 200 59.5
FAN03G1994 Fragaria x ananassa HOM05D006173 ORTHO05D007685 5.7e-58 229.6 227 51.5
unitig_46.g18486 Utricularia gibba HOM05D006173 ORTHO05D007685 6.9e-56 222.6 234 53.8
Lalb_Chr22g0357991 Lupinus albus HOM05D006173 ORTHO05D007685 7.6e-55 219.2 232 50.0
MD14G1101000 Malus domestica HOM05D006173 ORTHO05D007685 3.2e-53 213.8 239 47.7
HPP92_002170 Vanilla planifolia HOM05D006173 ORTHO05D007685 5.1e-51 206.5 126 74.6
HPP92_002168 Vanilla planifolia HOM05D006173 ORTHO05D007685 3.7e-49 200.3 200 51.5
QL07p014493 Quercus lobata HOM05D006173 ORTHO05D007685 4.1e-48 196.8 166 54.2
SGA_v2.0_scaffold106G30559 Striga asiatica HOM05D000268 ORTHO05D000261 5.3e-48 196.4 268 47.0
CANSAT64G0701 Cannabis sativa HOM05D006173 ORTHO05D007685 1.2e-47 195.3 117 78.6
DCAR_020632 Daucus carota HOM05D002466 ORTHO05D002668 1.0e-46 192.2 180 54.4
ATR0307G100 Amborella trichopoda HOM05D006173 ORTHO05D007685 2.2e-46 191.0 230 41.7
GSVIVG01025851001 Vitis vinifera HOM05D006173 ORTHO05D007685 2.5e-45 187.6 178 52.2
SMO069G0001 Selaginella moellendorffii HOM05D006173 ORTHO05D007685 5.5e-45 186.4 243 42.0
TAR623G0990 Trochodendron aralioides HOM05D006173 ORTHO05D007685 5.9e-39 166.4 97 81.4
CBR_g54315 Chara braunii HOM05D006173 ORTHO05D007685 2.0e-34 151.4 338 31.1
Nitab4.5_0000211g0140 Nicotiana tabacum HOM05D006173 ORTHO05D007685 2.6e-31 141.0 77 81.8
Nitab4.5_0003840g0030 Nicotiana tabacum HOM05D006173 ORTHO05D007685 3.5e-31 140.6 152 47.4
Nitab4.5_0000275g0010 Nicotiana tabacum HOM05D006173 ORTHO05D007685 5.5e-29 133.3 70 84.3
PRCOL_00002577 Prasinoderma coloniale HOM05D006173 ORTHO05D007685 5.5e-21 106.7 311 26.4
Lj2A730T36 Lonicera japonica HOM05D006173 ORTHO05D007685 7.2e-21 106.3 206 36.4
Lsat_1_v5_gn_4_93961 Lactuca sativa HOM05D006173 ORTHO05D007685 1.0e-14 85.9 50 72.0
Lj2A730T35 Lonicera japonica HOM05D006173 ORTHO05D007685 2.2e-14 84.7 49 79.6
Os12g0131300 Oryza sativa ssp. japonica HOM05D006173 ORTHO05D007685 2.2e-14 84.7 85 52.9


User provided reference genes

Program Settings