Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold104G30193 Striga asiatica HOM05D004501 ORTHO05D004944 0.0e+00 1416.0 707 100.0
MSTRG.12127 Avicennia marina HOM05D004501 ORTHO05D004944 9.1e-293 1010.0 711 71.2
Migut.A01144 Erythranthe guttata HOM05D004501 ORTHO05D004944 6.1e-281 970.7 710 69.9
SalBow6G6502 Salvia bowleyana HOM05D004501 ORTHO05D004944 2.0e-276 955.7 709 68.8
Oeu027013.1 Olea europaea HOM05D004501 ORTHO05D004944 7.0e-237 824.3 716 61.6
Lj2C224T11 Lonicera japonica HOM05D004501 ORTHO05D004944 1.3e-235 820.1 676 63.0
PGSC0003DMG400026239 Solanum tuberosum HOM05D004501 ORTHO05D004944 1.7e-235 819.7 697 60.3
Solyc08g078320.3 Solanum lycopersicum HOM05D004501 ORTHO05D004944 2.3e-235 819.3 704 59.9
Cc08_g12070 Coffea canephora HOM05D004501 ORTHO05D004944 5.0e-235 818.1 701 61.2
Sopen08g026820 Solanum pennellii HOM05D004501 ORTHO05D004944 2.5e-234 815.8 704 59.5
CiPaw.11G082400 Carya illinoinensis HOM05D004501 ORTHO05D004944 3.6e-233 812.0 687 61.0
CAN.G1178.8 Capsicum annuum HOM05D004501 ORTHO05D004944 6.2e-233 811.2 700 60.3
Haze_07939 Corylus avellana HOM05D004501 ORTHO05D004944 6.2e-233 811.2 687 60.4
Cfa012694 Carpinus fangiana HOM05D004501 ORTHO05D004944 1.8e-232 809.7 687 60.6
QL12p011237 Quercus lobata HOM05D004501 ORTHO05D004944 4.6e-228 795.0 686 60.2
vmacro14139 Vaccinium macrocarpon HOM05D004501 ORTHO05D004944 4.6e-228 795.0 688 61.0
Atru.chr9.1263 Acer truncatum HOM05D004501 ORTHO05D004944 8.1e-225 784.3 688 59.6
Eucgr.E00402 Eucalyptus grandis HOM05D004501 ORTHO05D004944 8.1e-225 784.3 704 56.8
MD04G1060900 Malus domestica HOM05D004501 ORTHO05D004944 4.9e-222 775.0 687 58.4
Ciclev10018712m.g Citrus clementina HOM05D004501 ORTHO05D004944 1.1e-221 773.9 682 60.3
Potri.001G155200 Populus trichocarpa HOM05D004501 ORTHO05D004944 1.6e-220 770.0 706 58.1
Dinv21665 Davidia involucrata HOM05D004501 ORTHO05D004944 3.5e-220 768.8 687 59.4
PSO675G3024 Papaver somniferum HOM05D004501 ORTHO05D004944 3.5e-220 768.8 676 59.3
Hund14524 Selenicereus undatus HOM05D004501 ORTHO05D004944 3.5e-220 768.8 673 59.4
Psat2g176440 Pisum sativum HOM05D004501 ORTHO05D004944 7.8e-220 767.7 713 56.2
FAN08G1352 Fragaria x ananassa HOM05D004501 ORTHO05D004944 1.7e-219 766.5 686 58.2
Thecc.03G247200 Theobroma cacao HOM05D004501 ORTHO05D004944 1.7e-219 766.5 688 59.3
Sc01g0008260 Simmondsia chinensis HOM05D004501 ORTHO05D004944 1.1e-218 763.8 705 57.6
PSO732G0005 Papaver somniferum HOM05D004501 ORTHO05D004944 1.5e-218 763.5 682 58.2
ECA240G3755 Erigeron canadensis HOM05D004501 ORTHO05D004944 1.9e-218 763.1 661 60.2
TWI15G0617 Tripterygium wilfordii HOM05D004501 ORTHO05D004944 2.5e-218 762.7 705 57.0
CANSAT21G1630 Cannabis sativa HOM05D004501 ORTHO05D004944 4.3e-218 761.9 699 58.2
Lsat_1_v5_gn_6_93441 Lactuca sativa HOM05D004501 ORTHO05D004944 4.3e-218 761.9 687 59.7
Ca_24594_v3 Cicer arietinum L. HOM05D004501 ORTHO05D004944 5.6e-218 761.5 662 59.1
FvH4_5g19540 Fragaria vesca HOM05D004501 ORTHO05D004944 5.6e-218 761.5 687 58.1
PGR042G0255 Punica granatum HOM05D004501 ORTHO05D004944 3.6e-217 758.8 699 56.8
Nn1g00910 Nelumbo nucifera HOM05D004501 ORTHO05D004944 1.4e-216 756.9 698 57.0
Sed0022861 Sechium edule HOM05D004501 ORTHO05D004944 2.4e-216 756.1 674 58.9
FAN13G2915 Fragaria x ananassa HOM05D004501 ORTHO05D004944 3.1e-216 755.7 693 57.4
Glyma.01G207400 Glycine max HOM05D004501 ORTHO05D004944 4.0e-216 755.4 688 57.0
EL10Ac5g12334 Beta vulgaris HOM05D004501 ORTHO05D004944 6.9e-216 754.6 713 56.5
RcHm_v2.0_Chr7g0204151 Rosa chinensis HOM05D004501 ORTHO05D004944 3.4e-215 752.3 686 57.7
Medtr5g012940 Medicago truncatula HOM05D004501 ORTHO05D004944 9.9e-215 750.7 687 56.8
VMungo1215G1578 Vigna mungo HOM05D004501 ORTHO05D004944 1.7e-214 750.0 681 56.7
Rhsim07G0115200 Rhododendron simsii HOM05D004501 ORTHO05D004944 2.2e-214 749.6 704 57.7
Lj2g0006235 Lotus japonicus HOM05D004501 ORTHO05D004944 4.9e-214 748.4 694 55.3
Manes.01G084200 Manihot esculenta HOM05D004501 ORTHO05D004944 8.4e-214 747.7 697 57.8
Gohir.D12G217800 Gossypium hirsutum HOM05D004501 ORTHO05D004944 1.1e-213 747.3 673 58.4
THA.LOC104810067 Tarenaya hassleriana HOM05D004501 ORTHO05D004944 1.1e-213 747.3 678 57.1
COL.COLO4_37109 Corchorus olitorius HOM05D004501 ORTHO05D004944 1.4e-213 746.9 683 57.5
Duzib205G0832 Durio zibethinus HOM05D004501 ORTHO05D004944 1.4e-213 746.9 694 57.1
Gohir.A12G215200 Gossypium hirsutum HOM05D004501 ORTHO05D004944 4.2e-213 745.3 673 57.9
Gorai.008G233400 Gossypium raimondii HOM05D004501 ORTHO05D004944 7.1e-213 744.6 673 58.1
AT2G39810 Arabidopsis thaliana HOM05D004501 ORTHO05D004944 2.1e-212 743.0 704 55.8
Sed0003847 Sechium edule HOM05D004501 ORTHO05D004944 2.7e-212 742.7 710 56.1
AL4G37360 Arabidopsis lyrata HOM05D004501 ORTHO05D004944 1.7e-211 740.0 705 55.7
Carub.0004s2192 Capsella rubella HOM05D004501 ORTHO05D004944 2.3e-211 739.6 693 56.4
CsaV3_5G004460 Cucumis sativus L. HOM05D004501 ORTHO05D004944 2.3e-211 739.6 713 55.1
Ah.12g054390 Amaranthus hybridus HOM05D004501 ORTHO05D004944 3.0e-211 739.2 688 55.8
HanXRQChr13g0417701 Helianthus annuus HOM05D004501 ORTHO05D004944 3.0e-211 739.2 651 60.2
Lalb_Chr09g0324311 Lupinus albus HOM05D004501 ORTHO05D004944 3.9e-211 738.8 687 56.6
ATR1145G029 Amborella trichopoda HOM05D004501 ORTHO05D004944 5.1e-211 738.4 691 55.4
Glyma.11G035800 Glycine max HOM05D004501 ORTHO05D004944 5.1e-211 738.4 688 56.0
HanXRQChr03g0088961 Helianthus annuus HOM05D004501 ORTHO05D004944 6.6e-211 738.0 650 60.0
Phvul.002G056400 Phaseolus vulgaris HOM05D004501 ORTHO05D004944 6.6e-211 738.0 681 56.4
Aa31LG5G19800 Aethionema arabicum HOM05D004501 ORTHO05D004944 3.3e-210 735.7 667 57.0
Lalb_Chr16g0379471 Lupinus albus HOM05D004501 ORTHO05D004944 4.3e-210 735.3 701 54.8
Nitab4.5_0010602g0010 Nicotiana tabacum HOM05D004501 ORTHO05D004944 9.6e-210 734.2 693 57.0
AUR62007118 Chenopodium quinoa HOM05D004501 ORTHO05D004944 1.3e-209 733.8 656 57.9
Aqoxy7G03746 Aquilegia oxysepala HOM05D004501 ORTHO05D004944 4.8e-209 731.9 671 57.4
Sp4g22100 Schrenkiella parvula HOM05D004501 ORTHO05D004944 4.8e-209 731.9 706 55.0
MELO3C005513.2 Cucumis melo HOM05D004501 ORTHO05D004944 6.2e-209 731.5 703 55.0
arahy.Tifrunner.gnm1.ann1.0753T9 Arachis hypogaea HOM05D004501 ORTHO05D004944 1.4e-208 730.3 687 55.7
arahy.Tifrunner.gnm1.ann1.F6SWGC Arachis hypogaea HOM05D004501 ORTHO05D004944 1.4e-208 730.3 687 55.7
BcaB02g09084 Brassica carinata HOM05D004501 ORTHO05D004944 1.8e-208 729.9 706 55.4
CARHR134700 Cardamine hirsuta HOM05D004501 ORTHO05D004944 1.8e-208 729.9 685 56.5
Thhalv10016197m.g Eutrema salsugineum HOM05D004501 ORTHO05D004944 2.4e-208 729.6 690 55.8
Prupe.5G064600 Prunus persica HOM05D004501 ORTHO05D004944 4.0e-208 728.8 648 58.8
Sabra01G0124800 Salix brachista HOM05D004501 ORTHO05D004944 6.9e-208 728.0 721 55.2
Sabra03G0049600 Salix brachista HOM05D004501 ORTHO05D004944 4.5e-207 725.3 706 55.8
Gorai.003G175400 Gossypium raimondii HOM05D004501 ORTHO05D004944 2.4e-205 719.5 684 55.8
A04p30230 Brassica napus HOM05D004501 ORTHO05D004944 3.2e-205 719.2 686 55.2
ClCG01G004260 Citrullus lanatus HOM05D004501 ORTHO05D004944 3.2e-205 719.2 733 52.8
Peaxi162Scf00346g00112 Petunia axillaris HOM05D004501 ORTHO05D004944 3.2e-205 719.2 697 56.5
Gohir.A03G006500 Gossypium hirsutum HOM05D004501 ORTHO05D004944 4.2e-205 718.8 684 56.1
C04p67630 Brassica napus HOM05D004501 ORTHO05D004944 7.1e-205 718.0 687 54.9
Potri.003G079700 Populus trichocarpa HOM05D004501 ORTHO05D004944 1.2e-204 717.2 692 56.4
Gohir.D03G165700 Gossypium hirsutum HOM05D004501 ORTHO05D004944 1.0e-203 714.1 684 55.6
FAN18G4013 Fragaria x ananassa HOM05D004501 ORTHO05D004944 3.0e-203 712.6 719 53.8
Duzib068G0690 Durio zibethinus HOM05D004501 ORTHO05D004944 4.3e-202 708.8 706 55.4
BolC4t28262H Brassica oleracea HOM05D004501 ORTHO05D004944 2.1e-201 706.4 706 53.4
BraA04t18485Z Brassica rapa HOM05D004501 ORTHO05D004944 6.2e-201 704.9 707 53.5
CiPaw.12G049700 Carya illinoinensis HOM05D004501 ORTHO05D004944 2.3e-195 686.4 591 61.3
BcaB01g03573 Brassica carinata HOM05D004501 ORTHO05D004944 1.3e-193 680.6 700 52.4
Actinidia02160 Actinidia chinensis HOM05D004501 ORTHO05D004944 2.1e-193 679.9 690 53.2
Nitab4.5_0001590g0040 Nicotiana tabacum HOM05D004501 ORTHO05D004944 6.2e-193 678.3 724 52.3
AUR62019990 Chenopodium quinoa HOM05D004501 ORTHO05D004944 8.2e-193 677.9 715 51.7
GSVIVG01005813001 Vitis vinifera HOM05D004501 ORTHO05D004944 8.2e-193 677.9 569 61.7
BcaC01g05462 Brassica carinata HOM05D004501 ORTHO05D004944 6.5e-190 668.3 729 50.3
TPR.G18132 Trifolium pratense HOM05D004501 ORTHO05D004944 2.5e-189 666.4 703 52.5
CDE11G0214 Ceratophyllum demersum HOM05D004501 ORTHO05D004944 1.3e-185 654.1 658 52.1
SEGI_38311 Sequoiadendron giganteum HOM05D004501 ORTHO05D004944 2.2e-182 643.3 707 49.6
Hma1.2p1_1196F.1_g265990 Hydrangea macrophylla HOM05D004501 ORTHO05D004944 3.6e-180 636.0 538 61.3
Zm00001eb056470 Zea mays HOM05D004501 ORTHO05D004944 4.6e-180 635.6 701 48.9
Rhsim13G0032200 Rhododendron simsii HOM05D004501 ORTHO05D004944 8.2e-177 624.8 603 57.0
Os03g0737200 Oryza sativa ssp. japonica HOM05D004501 ORTHO05D004944 5.9e-175 618.6 710 46.2
C03p26410 Brassica napus HOM05D004501 ORTHO05D004944 5.5e-173 612.1 706 48.9
CDE02G3094 Ceratophyllum demersum HOM05D004501 ORTHO05D004944 7.2e-165 585.1 658 48.9
Mapoly0088s0017 Marchantia polymorpha HOM05D004501 ORTHO05D004944 2.3e-155 553.5 695 45.6
CSS0040587 Camellia sinensis var. sinensis HOM05D004501 ORTHO05D004944 4.0e-155 552.7 511 58.7
Zm00001eb215300 Zea mays HOM05D004501 ORTHO05D004944 3.5e-151 539.7 601 48.6
HPP92_002600 Vanilla planifolia HOM05D004501 ORTHO05D004944 7.2e-149 531.9 612 47.5
Dinv39174 Davidia involucrata HOM05D004501 ORTHO05D004944 4.8e-145 519.2 435 60.9
Pp3c24_4970 Physcomitrium patens HOM05D004501 ORTHO05D004944 1.1e-144 518.1 706 43.5
unitig_0.g1052 Utricularia gibba HOM05D004501 ORTHO05D004944 1.2e-143 514.6 709 43.4
BolC3t15027H Brassica oleracea HOM05D004501 ORTHO05D004944 2.3e-142 510.4 497 53.9
Pp3c10_5410 Physcomitrium patens HOM05D004501 ORTHO05D004944 3.3e-141 506.5 694 44.1
SMO356G0217 Selaginella moellendorffii HOM05D004501 ORTHO05D004944 6.8e-139 498.8 618 44.3
TAR374G0010 Trochodendron aralioides HOM05D004501 ORTHO05D004944 3.3e-133 479.9 410 60.7
DCAR_020178 Daucus carota HOM05D004501 ORTHO05D004944 1.1e-128 464.9 457 54.3
CSS0032615 Camellia sinensis var. sinensis HOM05D004501 ORTHO05D004944 4.6e-127 459.5 398 60.6
Actinidia14399 Actinidia chinensis HOM05D004501 ORTHO05D004944 3.0e-110 403.7 482 47.3
CBR_g20363 Chara braunii HOM05D004501 ORTHO05D004944 2.4e-104 384.0 684 35.8
AagrBONN_evm.TU.Sc2ySwM_368.3343 Anthoceros agrestis HOM05D004501 ORTHO05D004944 2.8e-92 344.0 444 42.1
Cpa.g.sc776.4 Carica papaya HOM05D004501 ORTHO05D004944 8.4e-89 332.4 287 59.6
MD06G1054200 Malus domestica HOM05D004501 ORTHO05D004944 1.9e-80 304.7 262 58.0
C04p07690 Brassica napus HOM05D004501 ORTHO05D004944 8.7e-78 295.8 421 44.2
MD06G1054400 Malus domestica HOM05D004501 ORTHO05D004944 9.7e-69 265.8 242 59.5
TAR374G0951 Trochodendron aralioides HOM05D004501 ORTHO05D004944 3.8e-65 253.8 265 52.8
HanXRQChr15g0495741 Helianthus annuus HOM05D004501 ORTHO05D004944 1.7e-60 238.4 244 53.7
CSS0028018 Camellia sinensis var. sinensis HOM05D004501 ORTHO05D004944 1.4e-56 225.3 184 62.0
BolC4t22385H Brassica oleracea HOM05D004501 ORTHO05D004944 2.1e-55 221.5 223 52.5
DCAR_020177 Daucus carota HOM05D004501 ORTHO05D004944 2.3e-54 218.0 194 59.3
SHI29866 Sapria himalayana HOM05D004501 ORTHO05D004944 1.8e-51 208.4 233 51.9
CSS0011270 Camellia sinensis var. sinensis HOM05D004501 ORTHO05D004944 1.1e-48 199.1 173 61.3
CAN.G201.38 Capsicum annuum HOM05D004501 ORTHO05D004944 1.5e-40 172.2 205 50.7
Cpa.g.sc776.5 Carica papaya HOM05D004501 ORTHO05D004944 4.7e-39 167.2 146 56.8
CSS0007149 Camellia sinensis var. sinensis HOM05D004501 ORTHO05D004944 1.1e-35 156.0 132 61.4
BolC4t22386H Brassica oleracea HOM05D004501 ORTHO05D004944 1.8e-35 155.2 217 44.2
FAN04G2417 Fragaria x ananassa HOM05D004501 ORTHO05D004944 5.9e-34 150.2 130 63.1
PRCOL_00000429 Prasinoderma coloniale HOM05D004501 ORTHO05D004944 1.5e-32 145.6 501 26.3
Zm00001eb142020 Zea mays HOM05D004501 ORTHO05D004944 2.1e-31 141.7 173 41.6
Zm00001eb047720 Zea mays HOM05D004501 ORTHO05D004944 1.4e-30 139.0 113 58.4
CAN.G26.29 Capsicum annuum HOM05D004501 ORTHO05D004944 3.3e-24 117.9 199 39.2
MCO16G596 Micromonas commoda HOM05D004501 ORTHO05D004944 5.6e-16 90.5 541 23.1
GSVIVG01006616001 Vitis vinifera HOM05D004501 ORTHO05D004944 5.2e-14 84.0 73 58.9
Sed0019349 Sechium edule HOM05D004501 ORTHO05D004944 8.9e-14 83.2 77 54.5
BcaC02g12114 Brassica carinata HOM05D004501 ORTHO05D023925 7.8e-10 70.1 109 37.6
CSS0048159 Camellia sinensis var. sinensis HOM05D004501 ORTHO05D004944 8.6e-09 66.6 38 78.9
Zm00001eb420770 Zea mays HOM05D003450 ORTHO05D004150 4.0e-06 57.8 150 28.0
Zm00001eb333660 Zea mays HOM05D000230 ORTHO05D010966 8.9e-06 56.6 39 56.4


User provided reference genes

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