Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold101G29779 Striga asiatica HOM05D004913 ORTHO05D006150 5.1e-164 581.3 346 100.0
MSTRG.21888 Avicennia marina HOM05D004913 ORTHO05D006150 5.0e-127 458.4 323 82.7
Oeu032612.1 Olea europaea HOM05D004913 ORTHO05D006150 4.5e-112 408.7 323 74.9
CSS0025455 Camellia sinensis var. sinensis HOM05D004913 ORTHO05D006150 2.2e-111 406.4 325 74.8
Thecc.04G244000 Theobroma cacao HOM05D004913 ORTHO05D006150 2.3e-108 396.4 322 75.2
vmacro15402 Vaccinium macrocarpon HOM05D004913 ORTHO05D006150 3.0e-108 396.0 325 72.6
CSS0009777 Camellia sinensis var. sinensis HOM05D004913 ORTHO05D003182 2.0e-107 393.3 326 73.6
GSVIVG01018096001 Vitis vinifera HOM05D004913 ORTHO05D006150 7.5e-107 391.3 322 73.3
Duzib052G0554 Durio zibethinus HOM05D004913 ORTHO05D006150 9.7e-107 391.0 322 74.2
Migut.N00232 Erythranthe guttata HOM05D004913 ORTHO05D006150 9.1e-105 384.4 329 72.9
Gohir.D10G152000 Gossypium hirsutum HOM05D004913 ORTHO05D006150 1.7e-103 380.2 297 76.4
QL06p015098 Quercus lobata HOM05D004913 ORTHO05D006150 2.2e-103 379.8 301 76.1
Duzib151G0562 Durio zibethinus HOM05D004913 ORTHO05D006150 1.5e-102 377.1 300 74.7
Manes.15G035800 Manihot esculenta HOM05D004913 ORTHO05D006150 5.5e-102 375.2 300 74.3
Eucgr.H03172 Eucalyptus grandis HOM05D004913 ORTHO05D006150 7.2e-102 374.8 322 71.7
PGR004G2231 Punica granatum HOM05D004913 ORTHO05D006150 2.1e-101 373.2 296 75.0
Gorai.011G170500 Gossypium raimondii HOM05D004913 ORTHO05D006150 3.6e-101 372.5 306 74.2
Gohir.A10G114500 Gossypium hirsutum HOM05D004913 ORTHO05D006150 8.0e-101 371.3 306 74.2
CiPaw.02G117800 Carya illinoinensis HOM05D004913 ORTHO05D006150 1.0e-100 370.9 322 71.4
Potri.008G160800 Populus trichocarpa HOM05D004913 ORTHO05D006150 1.0e-100 370.9 323 71.2
CANSAT78G1520 Cannabis sativa HOM05D004913 ORTHO05D006150 1.4e-100 370.5 342 67.3
Sabra08G0122700 Salix brachista HOM05D004913 ORTHO05D006150 4.0e-100 369.0 317 71.9
MD13G1204100 Malus domestica HOM05D004913 ORTHO05D006150 6.8e-100 368.2 303 72.6
Cpa.g.sc58.23 Carica papaya HOM05D004913 ORTHO05D006150 1.5e-99 367.1 312 73.1
TAR636G2191 Trochodendron aralioides HOM05D004913 ORTHO05D006150 1.5e-99 367.1 324 70.4
RcHm_v2.0_Chr5g0043971 Rosa chinensis HOM05D004913 ORTHO05D006150 5.4e-97 358.6 289 73.0
Sed0027984 Sechium edule HOM05D004913 ORTHO05D006150 9.1e-97 357.8 314 70.4
CsaV3_3G012680 Cucumis sativus L. HOM05D004913 ORTHO05D006150 1.2e-96 357.5 322 68.3
Dinv44614 Davidia involucrata HOM05D004913 ORTHO05D006150 5.9e-96 355.1 312 70.2
Gorai.006G070100 Gossypium raimondii HOM05D004913 ORTHO05D006150 1.0e-95 354.4 286 74.1
Potri.010G078500 Populus trichocarpa HOM05D004913 ORTHO05D006150 1.7e-95 353.6 301 72.1
MD16G1206200 Malus domestica HOM05D004913 ORTHO05D006150 2.3e-95 353.2 279 73.5
Haze_11271 Corylus avellana HOM05D004913 ORTHO05D006150 2.9e-95 352.8 298 73.5
Prupe.1G027200 Prunus persica HOM05D004913 ORTHO05D006150 2.9e-95 352.8 304 71.1
Gohir.A09G057300 Gossypium hirsutum HOM05D004913 ORTHO05D006150 8.6e-95 351.3 299 71.9
THA.LOC104815979 Tarenaya hassleriana HOM05D004913 ORTHO05D006150 1.9e-94 350.1 295 72.2
Rhsim02G0032600 Rhododendron simsii HOM05D004913 ORTHO05D006150 1.6e-93 347.1 326 66.3
Lj3A719T118 Lonicera japonica HOM05D004913 ORTHO05D006150 2.1e-93 346.7 319 65.8
FvH4_3g24470 Fragaria vesca HOM05D004913 ORTHO05D006150 6.1e-93 345.1 317 68.5
TWI09G0491 Tripterygium wilfordii HOM05D004913 ORTHO05D006150 1.0e-92 344.4 302 70.2
Sed0018032 Sechium edule HOM05D004913 ORTHO05D003182 2.3e-92 343.2 272 74.6
MBI11_g38514_MAGBIO Magnolia biondii HOM05D004913 ORTHO05D006150 5.2e-92 342.0 322 65.2
DCAR_030710 Daucus carota HOM05D004913 ORTHO05D006150 1.2e-91 340.9 311 67.2
MELO3C006479.2 Cucumis melo HOM05D004913 ORTHO05D006150 5.7e-91 338.6 358 61.5
Nn1g02556 Nelumbo nucifera HOM05D004913 ORTHO05D006150 4.9e-90 335.5 321 66.0
THA.LOC104826068 Tarenaya hassleriana HOM05D004913 ORTHO05D006150 1.4e-89 334.0 281 72.2
Ciclev10005381m.g Citrus clementina HOM05D004913 ORTHO05D006150 1.8e-89 333.6 322 66.5
Migut.G00417 Erythranthe guttata HOM05D004913 ORTHO05D006150 2.4e-89 333.2 324 65.1
HanXRQChr12g0381181 Helianthus annuus HOM05D004913 ORTHO05D006150 5.9e-88 328.6 322 64.9
SalBow3G1711 Salvia bowleyana HOM05D004913 ORTHO05D006150 5.9e-88 328.6 358 60.1
Manes.03G170000 Manihot esculenta HOM05D004913 ORTHO05D006150 7.8e-88 328.2 322 64.3
VMungo0720G1087 Vigna mungo HOM05D004913 ORTHO05D006150 1.0e-87 327.8 322 65.5
arahy.Tifrunner.gnm1.ann1.8JLR9N Arachis hypogaea HOM05D004913 ORTHO05D006150 2.3e-87 326.6 326 65.3
FAN11G1852 Fragaria x ananassa HOM05D004913 ORTHO05D006150 2.3e-87 326.6 317 66.2
Phvul.003G138434 Phaseolus vulgaris HOM05D004913 ORTHO05D006150 2.9e-87 326.2 322 66.1
Lsat_1_v5_gn_5_67500 Lactuca sativa HOM05D004913 ORTHO05D006150 2.1e-85 320.1 335 63.6
AL1G13830 Arabidopsis lyrata HOM05D004913 ORTHO05D006150 3.0e-84 316.2 303 66.0
EL10Ac4g07493 Beta vulgaris HOM05D004913 ORTHO05D006150 4.0e-84 315.8 308 64.3
Gohir.D09G056500 Gossypium hirsutum HOM05D004913 ORTHO05D006150 6.8e-84 315.1 234 77.8
Sp2g08510 Schrenkiella parvula HOM05D004913 ORTHO05D006150 6.8e-84 315.1 312 63.8
arahy.Tifrunner.gnm1.ann1.9S1KBE Arachis hypogaea HOM05D004913 ORTHO05D006150 8.9e-84 314.7 326 63.5
Glyma.20G210600 Glycine max HOM05D004913 ORTHO05D006150 1.5e-83 313.9 300 66.7
Glyma.10G179800 Glycine max HOM05D004913 ORTHO05D006150 2.0e-83 313.5 290 67.2
Lalb_Chr06g0168981 Lupinus albus HOM05D004913 ORTHO05D006150 2.6e-83 313.2 301 66.1
Lj5g0012164 Lotus japonicus HOM05D004913 ORTHO05D006150 7.5e-83 311.6 322 64.6
AT1G04230 Arabidopsis thaliana HOM05D004913 ORTHO05D006150 2.2e-82 310.1 303 65.0
PSO210G5612 Papaver somniferum HOM05D004913 ORTHO05D006150 3.7e-82 309.3 315 61.6
Lalb_Chr21g0311951 Lupinus albus HOM05D004913 ORTHO05D006150 1.4e-81 307.4 314 63.7
AL37U10050 Arabidopsis lyrata HOM05D004913 ORTHO05D006150 9.2e-81 304.7 305 61.6
CARHR003560 Cardamine hirsuta HOM05D004913 ORTHO05D006150 3.5e-80 302.8 303 64.4
PSO832G0934 Papaver somniferum HOM05D004913 ORTHO05D006150 3.5e-80 302.8 300 62.3
ATR0665G449 Amborella trichopoda HOM05D004913 ORTHO05D006150 7.8e-80 301.6 327 59.9
C07p26280 Brassica napus HOM05D004913 ORTHO05D006150 1.0e-79 301.2 297 64.6
Psat6g114920 Pisum sativum HOM05D004913 ORTHO05D006150 3.9e-79 299.3 313 64.2
TWI73G0814 Tripterygium wilfordii HOM05D004913 ORTHO05D006150 5.0e-79 298.9 303 64.4
Sopen09g032190 Solanum pennellii HOM05D004913 ORTHO05D006150 8.6e-79 298.1 321 60.7
AT5G43720 Arabidopsis thaliana HOM05D004913 ORTHO05D006150 1.5e-78 297.4 262 66.4
Solyc09g083270.4 Solanum lycopersicum HOM05D004913 ORTHO05D006150 1.5e-78 297.4 321 60.7
BolC7t43157H Brassica oleracea HOM05D004913 ORTHO05D006150 1.9e-78 297.0 297 64.0
AUR62041210 Chenopodium quinoa HOM05D004913 ORTHO05D006150 3.3e-78 296.2 317 62.5
CAN.G626.13 Capsicum annuum HOM05D004913 ORTHO05D006150 4.3e-78 295.8 321 60.1
Medtr1g076290 Medicago truncatula HOM05D004913 ORTHO05D006150 7.3e-78 295.0 307 65.5
Carub.0008s0491 Capsella rubella HOM05D004913 ORTHO05D006150 3.6e-77 292.7 303 62.4
PGSC0003DMG400006092 Solanum tuberosum HOM05D004913 ORTHO05D006150 3.6e-77 292.7 321 60.1
Ca_09877_v3 Cicer arietinum L. HOM05D004913 ORTHO05D006150 1.8e-76 290.4 266 68.8
Carub.0001s0342 Capsella rubella HOM05D004913 ORTHO05D006150 5.2e-76 288.9 322 58.1
ECA233G3913 Erigeron canadensis HOM05D004913 ORTHO05D006150 2.6e-75 286.6 325 60.6
BolC2t10451H Brassica oleracea HOM05D004913 ORTHO05D006150 2.2e-74 283.5 289 61.9
CDE07G0872 Ceratophyllum demersum HOM05D004913 ORTHO05D006150 1.4e-73 280.8 303 62.0
Actinidia05471 Actinidia chinensis HOM05D004913 ORTHO05D006150 4.1e-73 279.3 317 60.3
AUR62040390 Chenopodium quinoa HOM05D004913 ORTHO05D006150 1.2e-72 277.7 211 77.3
Nitab4.5_0000525g0090 Nicotiana tabacum HOM05D004913 ORTHO05D006150 1.2e-72 277.7 327 57.5
Nitab4.5_0004203g0050 Nicotiana tabacum HOM05D004913 ORTHO05D006150 1.3e-71 274.2 326 56.7
FAN25G2316 Fragaria x ananassa HOM05D004913 ORTHO05D006150 3.9e-71 272.7 283 62.5
FAN25G1200 Fragaria x ananassa HOM05D004913 ORTHO05D006150 5.1e-71 272.3 283 62.2
Peaxi162Scf01416g00120 Petunia axillaris HOM05D004913 ORTHO05D006150 6.6e-71 271.9 323 54.8
Aqoxy2G03527 Aquilegia oxysepala HOM05D004913 ORTHO05D006150 1.9e-70 270.4 262 64.1
COL.COLO4_15768 Corchorus olitorius HOM05D000979 ORTHO05D003182 3.3e-70 269.6 303 58.4
CARHR179900 Cardamine hirsuta HOM05D004913 ORTHO05D006150 5.6e-70 268.9 217 71.0
Cc03_g04640 Coffea canephora HOM05D004913 ORTHO05D006150 9.5e-70 268.1 193 79.8
Thhalv10003245m.g Eutrema salsugineum HOM05D004913 ORTHO05D006150 1.4e-68 264.2 219 71.2
FAN21G0973 Fragaria x ananassa HOM05D004913 ORTHO05D006150 5.8e-67 258.8 283 60.8
unitig_0.g131 Utricularia gibba HOM05D004913 ORTHO05D006150 1.3e-66 257.7 202 71.3
A06p47740 Brassica napus HOM05D004913 ORTHO05D006150 8.3e-66 255.0 296 57.1
BcaC06g31682 Brassica carinata HOM05D004913 ORTHO05D006150 1.1e-65 254.6 297 57.6
BraA06t27642Z Brassica rapa HOM05D004913 ORTHO05D006150 1.9e-65 253.8 296 56.8
FAN16G1149 Fragaria x ananassa HOM05D004913 ORTHO05D006150 6.0e-64 248.8 226 67.7
Aa31LG5G3520 Aethionema arabicum HOM05D004913 ORTHO05D006150 1.7e-63 247.3 204 70.6
CDE04G3353 Ceratophyllum demersum HOM05D004913 ORTHO05D006150 3.9e-63 246.1 303 56.8
A02p27910 Brassica napus HOM05D004913 ORTHO05D006150 5.1e-63 245.7 306 54.2
BraA02t07829Z Brassica rapa HOM05D004913 ORTHO05D006150 5.1e-63 245.7 306 54.2
AagrBONN_evm.TU.Sc2ySwM_362.2200 Anthoceros agrestis HOM05D004913 ORTHO05D006150 1.2e-61 241.1 231 63.2
BcaC03g16589 Brassica carinata HOM05D004913 ORTHO05D006150 3.6e-61 239.6 210 66.2
C02p44080 Brassica napus HOM05D004913 ORTHO05D006150 3.6e-61 239.6 210 66.2
SEGI_31281 Sequoiadendron giganteum HOM05D004913 ORTHO05D006150 1.4e-60 237.7 256 59.0
HPP92_014140 Vanilla planifolia HOM05D004913 ORTHO05D006150 4.2e-57 226.1 262 58.8
Pp3c2_37690 Physcomitrium patens HOM05D004913 ORTHO05D006150 8.7e-55 218.4 341 48.1
CDE06G2453 Ceratophyllum demersum HOM05D004913 ORTHO05D006150 5.6e-54 215.7 251 56.2
Mapoly0010s0154 Marchantia polymorpha HOM05D004913 ORTHO05D006150 3.1e-52 209.9 239 59.0
Hund17874 Selenicereus undatus HOM05D004913 ORTHO05D006150 6.9e-52 208.8 226 60.2
Sc13g0004930 Simmondsia chinensis HOM05D004913 ORTHO05D006150 4.4e-51 206.1 258 54.3
SMO358G0388 Selaginella moellendorffii HOM05D004913 ORTHO05D006150 7.8e-48 195.3 314 46.5
AL8G16560 Arabidopsis lyrata HOM05D004913 ORTHO05D006150 8.7e-47 191.8 166 65.1
CDE07G2030 Ceratophyllum demersum HOM05D004913 ORTHO05D006150 1.9e-46 190.7 329 45.9
PSO210G2862 Papaver somniferum HOM05D004913 ORTHO05D006150 4.3e-46 189.5 235 54.5
SHI00581 Sapria himalayana HOM05D004913 ORTHO05D006150 9.6e-46 188.3 307 47.6
Zm00001eb212900 Zea mays HOM05D004913 ORTHO05D006150 2.8e-45 186.8 321 45.5
PSO238G0009 Papaver somniferum HOM05D004913 ORTHO05D006150 4.8e-45 186.0 256 51.6
Os03g0797700 Oryza sativa ssp. japonica HOM05D004913 ORTHO05D006150 1.5e-43 181.0 262 49.6
TAR365G1176 Trochodendron aralioides HOM05D004913 ORTHO05D006150 4.2e-41 172.9 169 64.5
Ah.13g071540 Amaranthus hybridus HOM05D004913 ORTHO05D006150 9.3e-41 171.8 172 62.2
ClCG05G004680 Citrullus lanatus HOM05D000979 ORTHO05D003182 9.3e-41 171.8 303 46.5
BcaC06g34634 Brassica carinata HOM05D004913 ORTHO05D006150 1.1e-38 164.9 151 68.2
CBR_g525 Chara braunii HOM05D004913 ORTHO05D006150 1.5e-27 127.9 136 53.7
BcaC06g34635 Brassica carinata HOM05D004913 ORTHO05D006150 6.0e-24 115.9 127 61.4
SMO347G0406 Selaginella moellendorffii HOM05D004913 ORTHO05D006150 3.7e-21 106.7 145 44.1
Ah.13g071550 Amaranthus hybridus HOM05D004913 ORTHO05D006150 7.2e-17 92.4 99 58.6
Zm00001eb034960 Zea mays HOM05D004913 ORTHO05D006150 2.1e-16 90.9 87 63.2
FAN16G0422 Fragaria x ananassa HOM05D004913 ORTHO05D006150 2.5e-09 67.4 58 72.4
Zm00001eb060940 Zea mays HOM05D004913 ORTHO05D006150 2.3e-07 60.8 57 68.4
MCO11G351 Micromonas commoda HOM05D004913 ORTHO05D006150 6.7e-07 59.3 174 33.9


User provided reference genes

Program Settings