Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SEGI_40805 Sequoiadendron giganteum HOM05D005862 ORTHO05D007731 0.0e+00 1371.3 1299 100.0
CDE01G0240 Ceratophyllum demersum HOM05D005862 ORTHO05D007731 6.5e-103 380.2 1259 45.4
HPP92_002379 Vanilla planifolia HOM05D005862 ORTHO05D007731 2.5e-91 341.7 1263 47.3
TAR375G0975 Trochodendron aralioides HOM05D005862 ORTHO05D007731 1.0e-87 329.7 793 60.8
CSS0041877 Camellia sinensis var. sinensis HOM05D005862 ORTHO05D007731 3.0e-84 318.2 1247 54.7
MBI04_g30800_MAGBIO Magnolia biondii HOM05D005862 ORTHO05D007731 7.4e-83 313.5 1281 59.4
Actinidia34295 Actinidia chinensis HOM05D005862 ORTHO05D007731 3.7e-82 311.2 1262 62.3
ATR0568G095 Amborella trichopoda HOM05D005862 ORTHO05D007731 8.2e-82 310.1 1135 65.2
Dinv29179 Davidia involucrata HOM05D005862 ORTHO05D007731 1.2e-80 306.2 821 47.9
Haze_22244 Corylus avellana HOM05D005862 ORTHO05D002549 1.5e-80 305.8 1245 60.3
QL09p026590 Quercus lobata HOM05D005862 ORTHO05D007731 1.7e-79 302.4 1245 58.8
TWI60G0141 Tripterygium wilfordii HOM05D005862 ORTHO05D007731 6.5e-79 300.4 1239 62.3
Cfa013617 Carpinus fangiana HOM05D005862 ORTHO05D007731 1.1e-78 299.7 795 59.2
Potri.017G036400 Populus trichocarpa HOM05D005862 ORTHO05D007731 6.1e-77 293.9 1274 60.4
Potri.007G123900 Populus trichocarpa HOM05D005862 ORTHO05D007731 1.0e-76 293.1 1288 60.4
Manes.08G165200 Manihot esculenta HOM05D005862 ORTHO05D007731 3.0e-76 291.6 1270 60.1
Atru.chr12.2038 Acer truncatum HOM05D005862 ORTHO05D007731 5.2e-76 290.8 1271 53.4
Peaxi162Scf01650g00056 Petunia axillaris HOM05D005862 ORTHO05D007731 5.2e-76 290.8 795 59.0
RcHm_v2.0_Chr4g0421271 Rosa chinensis HOM05D005862 ORTHO05D007731 6.7e-76 290.4 841 57.1
Sabra07G0100300 Salix brachista HOM05D005862 ORTHO05D007731 1.5e-75 289.3 1288 60.4
Sc25g0001110 Simmondsia chinensis HOM05D005862 ORTHO05D007731 2.6e-75 288.5 1262 58.1
Cc11_g03910 Coffea canephora HOM05D005862 ORTHO05D007731 4.4e-75 287.7 1136 56.6
COL.COLO4_08905 Corchorus olitorius HOM05D005862 ORTHO05D007731 5.7e-75 287.3 840 56.5
CiPaw.08G043700 Carya illinoinensis HOM05D005862 ORTHO05D007731 7.4e-75 287.0 1246 62.0
MSTRG.26941 Avicennia marina HOM05D005862 ORTHO05D007731 9.7e-75 286.6 1260 61.4
Thecc.05G207900 Theobroma cacao HOM05D005862 ORTHO05D007731 1.7e-74 285.8 829 56.9
Gohir.D03G049400 Gossypium hirsutum HOM05D005862 ORTHO05D007731 3.7e-74 284.6 1277 60.3
MD07G1304500 Malus domestica HOM05D005862 ORTHO05D007731 3.7e-74 284.6 1286 59.7
Aqoxy1G00072 Aquilegia oxysepala HOM05D005862 ORTHO05D007731 4.8e-74 284.3 1257 52.1
Duzib177G0812 Durio zibethinus HOM05D005862 ORTHO05D007731 4.8e-74 284.3 812 57.8
PGR042G0369 Punica granatum HOM05D005862 ORTHO05D007731 6.3e-74 283.9 1244 53.2
Ciclev10013854m.g Citrus clementina HOM05D005862 ORTHO05D007731 8.2e-74 283.5 1128 50.1
vmacro06486 Vaccinium macrocarpon HOM05D005862 ORTHO05D007731 1.4e-73 282.7 1282 61.3
MELO3C025691.2 Cucumis melo HOM05D005862 ORTHO05D007731 1.8e-73 282.3 1280 52.9
Prupe.6G174500 Prunus persica HOM05D005862 ORTHO05D007731 1.8e-73 282.3 797 58.0
Ah.07g202940 Amaranthus hybridus HOM05D005862 ORTHO05D007731 3.1e-73 281.6 1263 55.6
Gorai.003G050800 Gossypium raimondii HOM05D005862 ORTHO05D007731 1.2e-72 279.6 827 57.1
FAN07G2680 Fragaria x ananassa HOM05D005862 ORTHO05D007731 2.6e-72 278.5 1244 59.2
Hund09764 Selenicereus undatus HOM05D005862 ORTHO05D007731 2.6e-72 278.5 1249 59.2
ECA232G4753 Erigeron canadensis HOM05D005862 ORTHO05D007731 4.5e-72 277.7 1148 61.5
Rhsim03G0219600 Rhododendron simsii HOM05D005862 ORTHO05D007731 7.7e-72 276.9 1250 63.0
DCAR_006500 Daucus carota HOM05D005862 ORTHO05D007731 1.0e-71 276.6 809 57.4
Gohir.A02G138900 Gossypium hirsutum HOM05D005862 ORTHO05D007731 1.0e-71 276.6 814 57.6
CANSAT11G1786 Cannabis sativa HOM05D005862 ORTHO05D007731 1.7e-71 275.8 1297 55.7
FAN17G0149 Fragaria x ananassa HOM05D005862 ORTHO05D007731 1.7e-71 275.8 1275 57.8
FAN12G1215 Fragaria x ananassa HOM05D005862 ORTHO05D007731 2.2e-71 275.4 1278 57.9
arahy.Tifrunner.gnm1.ann1.B0Y075 Arachis hypogaea HOM05D005862 ORTHO05D007731 3.8e-71 274.6 1268 50.9
AUR62002419 Chenopodium quinoa HOM05D005862 ORTHO05D007731 3.8e-71 274.6 1262 55.6
FvH4_4g17300 Fragaria vesca HOM05D005862 ORTHO05D007731 3.8e-71 274.6 1244 58.8
AUR62023769 Chenopodium quinoa HOM05D005862 ORTHO05D007731 6.5e-71 273.9 1260 55.2
Cpa.g.sc39.47 Carica papaya HOM05D005862 ORTHO05D007731 8.5e-71 273.5 836 56.3
arahy.Tifrunner.gnm1.ann1.UAU06L Arachis hypogaea HOM05D005862 ORTHO05D007731 1.5e-70 272.7 1268 50.9
arahy.Tifrunner.gnm1.ann1.LMCB5G Arachis hypogaea HOM05D005862 ORTHO05D007731 2.5e-70 271.9 1268 50.9
Lj2C679T3 Lonicera japonica HOM05D005862 ORTHO05D007731 4.2e-70 271.2 823 56.5
Solyc03g096830.4 Solanum lycopersicum HOM05D005862 ORTHO05D007731 5.5e-70 270.8 1266 60.6
FAN12G4319 Fragaria x ananassa HOM05D005862 ORTHO05D007731 9.4e-70 270.0 1278 57.7
Sopen03g027570 Solanum pennellii HOM05D005862 ORTHO05D007731 9.4e-70 270.0 1266 60.6
Oeu055444.1 Olea europaea HOM05D005862 ORTHO05D007731 3.6e-69 268.1 811 57.0
EL10Ac3g06117 Beta vulgaris HOM05D005862 ORTHO05D007731 6.1e-69 267.3 1261 55.0
Lsat_1_v5_gn_9_47361 Lactuca sativa HOM05D005862 ORTHO05D007731 8.0e-69 266.9 1280 59.4
Sed0009679 Sechium edule HOM05D005862 ORTHO05D007731 8.0e-69 266.9 824 55.2
SalBow4G3068 Salvia bowleyana HOM05D005862 ORTHO05D007731 1.0e-68 266.5 798 56.0
Nitab4.5_0000021g0260 Nicotiana tabacum HOM05D005862 ORTHO05D007731 1.8e-68 265.8 1263 61.0
Nitab4.5_0002302g0060 Nicotiana tabacum HOM05D005862 ORTHO05D007731 1.8e-68 265.8 796 57.2
VMungo1215G3088 Vigna mungo HOM05D005862 ORTHO05D007731 1.8e-68 265.8 829 55.4
LjContig00222g0010720 Lotus japonicus HOM05D005862 ORTHO05D007731 2.3e-68 265.4 801 56.2
Migut.F00109 Erythranthe guttata HOM05D005862 ORTHO05D007731 3.0e-68 265.0 1271 61.6
Eucgr.A02953 Eucalyptus grandis HOM05D005862 ORTHO05D007731 3.0e-68 265.0 831 49.7
Glyma.11G013700 Glycine max HOM05D005862 ORTHO05D007731 1.3e-66 259.6 834 56.2
SGA_v2.0_scaffold44G16880 Striga asiatica HOM05D005862 ORTHO05D007731 2.4e-65 255.4 1271 57.2
HanXRQChr04g0111711 Helianthus annuus HOM05D005862 ORTHO05D007731 3.1e-65 255.0 1271 56.5
Nn3g19139 Nelumbo nucifera HOM05D005862 ORTHO05D007731 7.0e-65 253.8 1255 58.0
CsaV3_6G018920 Cucumis sativus L. HOM05D005862 ORTHO05D007731 9.1e-65 253.4 820 55.1
TPR.G37938 Trifolium pratense HOM05D005862 ORTHO05D007731 3.5e-64 251.5 1241 55.2
Phvul.002G036500 Phaseolus vulgaris HOM05D005862 ORTHO05D007731 7.7e-64 250.4 829 55.1
BolC5t33517H Brassica oleracea HOM05D005862 ORTHO05D007731 2.2e-63 248.8 831 48.9
Lalb_Chr25g0279841 Lupinus albus HOM05D005862 ORTHO05D007731 2.2e-63 248.8 1270 54.6
C05p48080 Brassica napus HOM05D005862 ORTHO05D007731 2.9e-63 248.4 832 50.0
A05p31680 Brassica napus HOM05D005862 ORTHO05D007731 3.8e-63 248.1 831 49.7
THA.LOC104820358 Tarenaya hassleriana HOM05D005862 ORTHO05D007731 3.8e-63 248.1 817 50.3
CAN.G303.67 Capsicum annuum HOM05D005862 ORTHO05D007731 5.0e-63 247.7 801 57.6
Psat2g187320 Pisum sativum HOM05D005862 ORTHO05D007731 6.5e-63 247.3 1241 51.4
AT3G18110 Arabidopsis thaliana HOM05D005862 ORTHO05D007731 1.9e-62 245.7 810 50.0
Thhalv10019896m.g Eutrema salsugineum HOM05D005862 ORTHO05D007731 2.5e-62 245.4 834 49.3
Ca_24470_v3 Cicer arietinum L. HOM05D005862 ORTHO05D007731 3.2e-62 245.0 790 56.2
AL3G31270 Arabidopsis lyrata HOM05D005862 ORTHO05D007731 7.2e-62 243.8 802 50.6
Carub.0003s1784 Capsella rubella HOM05D005862 ORTHO05D007731 7.2e-62 243.8 839 49.8
Sp3g16230 Schrenkiella parvula HOM05D005862 ORTHO05D007731 1.2e-61 243.0 824 50.6
Aa31LG8G4960 Aethionema arabicum HOM05D005862 ORTHO05D007731 2.1e-61 242.3 834 45.8
BraA05t22001Z Brassica rapa HOM05D005862 ORTHO05D007731 8.0e-61 240.4 831 49.5
CARHR093420 Cardamine hirsuta HOM05D005862 ORTHO05D007731 3.4e-59 235.0 848 47.9
Medtr5g008300 Medicago truncatula HOM05D005862 ORTHO05D007731 9.8e-59 233.4 802 55.1
Mapoly0068s0065 Marchantia polymorpha HOM05D005862 ORTHO05D007731 5.9e-56 224.2 311 43.4
PSO063G7658 Papaver somniferum HOM05D005862 ORTHO05D007731 5.9e-56 224.2 1074 65.5
AagrBONN_evm.TU.Sc2ySwM_344.2098 Anthoceros agrestis HOM05D005862 ORTHO05D007731 1.1e-54 219.9 806 52.9
SMO356G0443 Selaginella moellendorffii HOM05D005862 ORTHO05D007731 7.5e-51 207.2 668 60.8
GSVIVG01024457001 Vitis vinifera HOM05D005862 ORTHO05D007731 1.2e-48 199.9 379 40.1
Zm00001eb373900 Zea mays HOM05D005862 ORTHO05D007731 6.6e-47 194.1 1132 52.3
BcaC05g28669 Brassica carinata HOM05D005862 ORTHO05D007731 1.5e-46 193.0 164 56.7
Pp3c17_6450 Physcomitrium patens HOM05D005862 ORTHO05D007731 3.3e-46 191.8 229 50.2
Pp3c25_7340 Physcomitrium patens HOM05D005862 ORTHO05D007731 8.9e-44 183.7 337 38.0
Lj2C685T2 Lonicera japonica HOM05D005862 ORTHO05D007731 5.4e-41 174.5 230 50.0
Pp3c5_21760 Physcomitrium patens HOM05D005862 ORTHO05D007731 1.0e-39 170.2 347 34.3
Lj2A685T11 Lonicera japonica HOM05D005862 ORTHO05D007731 1.1e-38 166.8 299 37.8
Pp3c6_11500 Physcomitrium patens HOM05D005862 ORTHO05D007731 9.5e-38 163.7 339 33.6
HPP92_027606 Vanilla planifolia HOM05D005862 ORTHO05D007731 3.4e-35 155.2 202 42.1
Os06g0199100 Oryza sativa ssp. japonica HOM05D005862 ORTHO05D007731 1.0e-31 143.7 125 52.8
Lj2A679T10 Lonicera japonica HOM05D005862 ORTHO05D007731 1.7e-31 142.9 192 37.0
BolC5t33548H Brassica oleracea HOM05D005862 ORTHO05D007731 1.5e-30 139.8 689 52.8
TAR375G0634 Trochodendron aralioides HOM05D005862 ORTHO05D007731 1.1e-28 133.7 114 57.0
CBR_g41643 Chara braunii HOM05D005862 ORTHO05D007731 5.6e-22 111.3 178 34.3
AUR62021709 Chenopodium quinoa HOM05D005862 ORTHO05D007731 1.4e-20 106.7 101 50.5
C05p47250 Brassica napus HOM05D005862 ORTHO05D007731 4.3e-14 85.1 86 47.7
BolC5t33451H Brassica oleracea HOM05D005862 ORTHO05D007731 4.3e-14 85.1 86 47.7
SalBow4G1238 Salvia bowleyana HOM05D005862 ORTHO05D007731 2.1e-13 82.8 60 60.0
Mapoly0029s0090 Marchantia polymorpha HOM05D005862 ORTHO05D021269 9.9e-11 73.9 174 32.8
Pp3c4_14490 Physcomitrium patens HOM05D005862 ORTHO05D000003 1.3e-10 73.6 227 22.5
SEGI_07964 Sequoiadendron giganteum HOM05D006217 ORTHO05D008480 1.7e-10 73.2 172 29.7
Mapoly0079s0007 Marchantia polymorpha HOM05D006414 ORTHO05D007780 4.2e-09 68.6 159 30.2
SEGI_26661 Sequoiadendron giganteum HOM05D001779 ORTHO05D001753 2.7e-08 65.9 107 31.8
CANSAT11G0661 Cannabis sativa HOM05D003056 ORTHO05D003422 4.6e-08 65.1 186 23.7
AagrBONN_evm.TU.Sc2ySwM_228.3517 Anthoceros agrestis HOM05D003056 ORTHO05D003422 1.0e-07 63.9 150 25.3
COL.COLO4_08057 Corchorus olitorius HOM05D005775 ORTHO05D000023 1.0e-07 63.9 98 34.7
Sc17g0002360 Simmondsia chinensis HOM05D001779 ORTHO05D001753 3.0e-07 62.4 108 30.6
A06p38950 Brassica napus HOM05D001779 ORTHO05D001753 3.9e-07 62.0 110 33.6
Sc17g0002310 Simmondsia chinensis HOM05D001779 ORTHO05D001753 5.1e-07 61.6 108 30.6
AL8G21830 Arabidopsis lyrata HOM05D001779 ORTHO05D001753 6.6e-07 61.2 110 33.6
BraA06t26809Z Brassica rapa HOM05D001779 ORTHO05D001753 6.6e-07 61.2 110 33.6
ClCG09G008970 Citrullus lanatus HOM05D001779 ORTHO05D001753 6.6e-07 61.2 168 28.6
Prupe.3G037500 Prunus persica HOM05D003056 ORTHO05D003422 6.6e-07 61.2 183 25.7
BcaC06g30762 Brassica carinata HOM05D001779 ORTHO05D001753 1.1e-06 60.5 110 32.7
BcaC06g30763 Brassica carinata HOM05D001779 ORTHO05D001753 1.1e-06 60.5 110 32.7
Carub.0008s0848 Capsella rubella HOM05D001779 ORTHO05D001753 1.1e-06 60.5 110 32.7
Eucgr.K02161 Eucalyptus grandis HOM05D001779 ORTHO05D001753 1.1e-06 60.5 110 31.8
Rhsim01G0278600 Rhododendron simsii HOM05D005775 ORTHO05D000023 1.1e-06 60.5 98 35.7
Rhsim12G0158500 Rhododendron simsii HOM05D003056 ORTHO05D003422 1.1e-06 60.5 176 24.4
vmacro14952 Vaccinium macrocarpon HOM05D005775 ORTHO05D000023 1.1e-06 60.5 98 36.7
AT5G48730 Arabidopsis thaliana HOM05D001779 ORTHO05D001753 1.5e-06 60.1 110 32.7
Migut.N00231 Erythranthe guttata HOM05D002479 ORTHO05D002675 1.5e-06 60.1 109 31.2
RcHm_v2.0_Chr4g0401161 Rosa chinensis HOM05D003056 ORTHO05D003422 1.5e-06 60.1 195 24.6
TPR.G3276 Trifolium pratense HOM05D004127 ORTHO05D005119 1.5e-06 60.1 119 31.1
Oeu019258.1 Olea europaea HOM05D000300 ORTHO05D000383 1.9e-06 59.7 208 25.0
THA.LOC104802670 Tarenaya hassleriana HOM05D001779 ORTHO05D001753 1.9e-06 59.7 110 30.9
Atru.chr5.2026 Acer truncatum HOM05D001779 ORTHO05D001753 2.5e-06 59.3 192 28.1
HanXRQChr06g0184931 Helianthus annuus HOM05D002479 ORTHO05D002675 2.5e-06 59.3 101 32.7
Hma1.2p1_0209F.1_g089290 Hydrangea macrophylla HOM05D005775 ORTHO05D000023 2.5e-06 59.3 98 36.7
Thhalv10004021m.g Eutrema salsugineum HOM05D001779 ORTHO05D001753 3.3e-06 58.9 110 31.8
FAN04G2077 Fragaria x ananassa HOM05D001779 ORTHO05D001753 3.3e-06 58.9 177 23.7
Pp3c22_3230 Physcomitrium patens HOM05D003056 ORTHO05D003422 3.3e-06 58.9 172 24.4
Sp2g19140 Schrenkiella parvula HOM05D001779 ORTHO05D001753 3.3e-06 58.9 110 30.9
AL5G11950 Arabidopsis lyrata HOM05D000001 ORTHO05D010008 4.3e-06 58.5 90 33.3
PSO674G0008 Papaver somniferum HOM05D001779 ORTHO05D001753 4.3e-06 58.5 120 29.2
RcHm_v2.0_Chr7g0231531 Rosa chinensis HOM05D001779 ORTHO05D001753 4.3e-06 58.5 108 30.6
BolC5t33524H Brassica oleracea HOM05D005862 ORTHO05D007731 5.6e-06 58.2 41 56.1
Lju1074C3T5 Lonicera japonica HOM05D002479 ORTHO05D002675 5.6e-06 58.2 108 31.5
Lalb_Chr15g0084001 Lupinus albus HOM05D003056 ORTHO05D003422 5.6e-06 58.2 185 22.7
PGSC0003DMG400008611 Solanum tuberosum HOM05D001779 ORTHO05D001753 5.6e-06 58.2 124 29.0
AT2G02750 Arabidopsis thaliana HOM05D000001 ORTHO05D010008 7.3e-06 57.8 90 33.3
Medtr7g056613 Medicago truncatula HOM05D001779 ORTHO05D001753 7.3e-06 57.8 109 32.1
Nn8g40410 Nelumbo nucifera HOM05D003056 ORTHO05D003422 7.3e-06 57.8 158 23.4
Rhsim07G0058000 Rhododendron simsii HOM05D001779 ORTHO05D001753 7.3e-06 57.8 204 27.0
Rhsim12G0158600 Rhododendron simsii HOM05D003056 ORTHO05D003422 7.3e-06 57.8 176 23.9
AT4G39620 Arabidopsis thaliana HOM05D006414 ORTHO05D007780 9.6e-06 57.4 135 25.9
AUR62006894 Chenopodium quinoa HOM05D002479 ORTHO05D002675 9.6e-06 57.4 124 30.6
FvH4_5g33190 Fragaria vesca HOM05D001779 ORTHO05D001753 9.6e-06 57.4 177 23.2
FAN18G1972 Fragaria x ananassa HOM05D001779 ORTHO05D001753 9.6e-06 57.4 177 23.2
FAN20G1843 Fragaria x ananassa HOM05D005775 ORTHO05D000023 9.6e-06 57.4 172 28.5
PSO541G6324 Papaver somniferum HOM05D003056 ORTHO05D003422 9.6e-06 57.4 181 19.9
PSO832G0330 Papaver somniferum HOM05D001779 ORTHO05D001753 9.6e-06 57.4 110 30.0


User provided reference genes

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