Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SEGI_40290 Sequoiadendron giganteum HOM05D051269 ORTHO05D050991 4.6e-233 810.8 401 100.0
SEGI_17581 Sequoiadendron giganteum HOM05D051269 ORTHO05D050991 3.9e-51 206.5 183 61.2
DCAR_019879 Daucus carota HOM05D000278 ORTHO05D004031 4.0e-11 73.6 49 65.3
PSO339G2052 Papaver somniferum HOM05D000278 ORTHO05D004031 5.2e-11 73.2 49 67.3
PSO384G2052 Papaver somniferum HOM05D000278 ORTHO05D004031 5.2e-11 73.2 49 67.3
EL10Ac5g12659 Beta vulgaris HOM05D000278 ORTHO05D004031 6.8e-11 72.8 49 65.3
Os03g0804800 Oryza sativa ssp. japonica HOM05D000278 ORTHO05D004031 6.8e-11 72.8 49 65.3
EL10Ac3g06816 Beta vulgaris HOM05D000278 ORTHO05D004031 8.9e-11 72.4 49 65.3
TWI34G1951 Tripterygium wilfordii HOM05D000278 ORTHO05D004031 8.9e-11 72.4 82 48.8
Cpa.g.sc51.110 Carica papaya HOM05D000278 ORTHO05D004031 1.2e-10 72.0 49 65.3
ClCG10G013350 Citrullus lanatus HOM05D000278 ORTHO05D004031 1.2e-10 72.0 82 48.8
Lsat_1_v5_gn_4_42920 Lactuca sativa HOM05D000278 ORTHO05D004031 1.2e-10 72.0 49 65.3
Nn7g35821 Nelumbo nucifera HOM05D000278 ORTHO05D004031 1.2e-10 72.0 49 65.3
Potri.013G058500 Populus trichocarpa HOM05D000278 ORTHO05D004031 1.2e-10 72.0 49 65.3
Sabra13G0052100 Salix brachista HOM05D000278 ORTHO05D004031 1.2e-10 72.0 49 65.3
AL6G29410 Arabidopsis lyrata HOM05D000278 ORTHO05D004031 1.5e-10 71.6 49 67.3
CDE05G1661 Ceratophyllum demersum HOM05D000278 ORTHO05D004031 1.5e-10 71.6 49 67.3
Hma1.2p1_1145F.1_g261380 Hydrangea macrophylla HOM05D000278 ORTHO05D004031 1.5e-10 71.6 49 65.3
Aqoxy2G00582 Aquilegia oxysepala HOM05D000278 ORTHO05D004031 2.0e-10 71.2 47 66.0
BcaC05g29888 Brassica carinata HOM05D000278 ORTHO05D004031 2.0e-10 71.2 49 65.3
A05p43400 Brassica napus HOM05D000278 ORTHO05D004031 2.0e-10 71.2 49 65.3
C05p63100 Brassica napus HOM05D000278 ORTHO05D004031 2.0e-10 71.2 49 65.3
BolC5t34962H Brassica oleracea HOM05D000278 ORTHO05D004031 2.0e-10 71.2 49 65.3
BraA05t23080Z Brassica rapa HOM05D000278 ORTHO05D004031 2.0e-10 71.2 49 65.3
CARHR078090 Cardamine hirsuta HOM05D000278 ORTHO05D004031 2.0e-10 71.2 49 65.3
Thhalv10020448m.g Eutrema salsugineum HOM05D000278 ORTHO05D004031 2.0e-10 71.2 49 65.3
PGR142G1170 Punica granatum HOM05D000278 ORTHO05D004031 2.0e-10 71.2 49 67.3
Sc13g0002700 Simmondsia chinensis HOM05D000278 ORTHO05D004031 2.0e-10 71.2 49 65.3
Hund19239 Selenicereus undatus HOM05D000278 ORTHO05D004031 2.6e-10 70.9 49 63.3
GSVIVG01033394001 Vitis vinifera HOM05D000278 ORTHO05D004031 2.6e-10 70.9 49 65.3
C03p40680 Brassica napus HOM05D000278 ORTHO05D004031 3.4e-10 70.5 49 65.3
Cfa016437 Carpinus fangiana HOM05D000278 ORTHO05D004031 3.4e-10 70.5 49 65.3
CiPaw.09G001600 Carya illinoinensis HOM05D000278 ORTHO05D004031 3.4e-10 70.5 49 65.3
TPR.G36870 Trifolium pratense HOM05D000278 ORTHO05D004031 3.4e-10 70.5 49 65.3
AL3G13870 Arabidopsis lyrata HOM05D000278 ORTHO05D004031 4.4e-10 70.1 49 65.3
Carub.0003s0321 Capsella rubella HOM05D000278 ORTHO05D004031 4.4e-10 70.1 49 65.3
MELO3C026888.2 Cucumis melo HOM05D000278 ORTHO05D004031 4.4e-10 70.1 49 65.3
CsaV3_3G043280 Cucumis sativus L. HOM05D000278 ORTHO05D004031 4.4e-10 70.1 49 65.3
Dinv37012 Davidia involucrata HOM05D000278 ORTHO05D004031 4.4e-10 70.1 49 63.3
Sp3g02930 Schrenkiella parvula HOM05D000278 ORTHO05D004031 4.4e-10 70.1 49 65.3
TWI32G0619 Tripterygium wilfordii HOM05D000278 ORTHO05D004031 4.4e-10 70.1 82 47.6
Zm00001eb114320 Zea mays HOM05D000278 ORTHO05D004031 4.4e-10 70.1 49 63.3
Actinidia22085 Actinidia chinensis HOM05D000278 ORTHO05D004031 5.8e-10 69.7 48 64.6
Actinidia30554 Actinidia chinensis HOM05D000278 ORTHO05D004031 5.8e-10 69.7 48 64.6
ECA232G4643 Erigeron canadensis HOM05D000278 ORTHO05D004031 5.8e-10 69.7 61 54.1
HanXRQChr08g0227471 Helianthus annuus HOM05D000278 ORTHO05D004031 5.8e-10 69.7 49 63.3
MD17G1264600 Malus domestica HOM05D000278 ORTHO05D004031 5.8e-10 69.7 49 65.3
Potri.019G034200 Populus trichocarpa HOM05D000278 ORTHO05D004031 5.8e-10 69.7 49 59.2
Prupe.3G113600 Prunus persica HOM05D000278 ORTHO05D004031 5.8e-10 69.7 49 67.3
Prupe.3G114000 Prunus persica HOM05D000278 ORTHO05D004031 5.8e-10 69.7 49 67.3
Sabra19G0042100 Salix brachista HOM05D000278 ORTHO05D004031 5.8e-10 69.7 82 45.1
Zm00001eb200400 Zea mays HOM05D000278 ORTHO05D004031 5.8e-10 69.7 49 63.3
BcaNung04528 Brassica carinata HOM05D000278 ORTHO05D004031 7.5e-10 69.3 49 65.3
CDE01G0608 Ceratophyllum demersum HOM05D000278 ORTHO05D004031 7.5e-10 69.3 49 65.3
Ca_25711_v3 Cicer arietinum L. HOM05D000278 ORTHO05D004031 7.5e-10 69.3 60 58.3
Oeu012404.4 Olea europaea HOM05D000278 ORTHO05D004031 7.5e-10 69.3 60 56.7
Rhsim03G0008300 Rhododendron simsii HOM05D000278 ORTHO05D004031 7.5e-10 69.3 55 61.8
CANSAT25G3570 Cannabis sativa HOM05D000278 ORTHO05D004031 9.8e-10 68.9 49 63.3
FvH4_6g27660 Fragaria vesca HOM05D000278 ORTHO05D004031 9.8e-10 68.9 49 67.3
FAN09G2390 Fragaria x ananassa HOM05D000278 ORTHO05D004031 9.8e-10 68.9 49 67.3
FAN14G1825 Fragaria x ananassa HOM05D000278 ORTHO05D004031 9.8e-10 68.9 49 67.3
Psat0s3407g0040 Pisum sativum HOM05D000278 ORTHO05D004031 9.8e-10 68.9 49 63.3
Rhsim01G0190500 Rhododendron simsii HOM05D000278 ORTHO05D004031 9.8e-10 68.9 46 69.6
Rhsim03G0001500 Rhododendron simsii HOM05D000278 ORTHO05D004031 9.8e-10 68.9 46 69.6
Aa31LG5G14540 Aethionema arabicum HOM05D000278 ORTHO05D004031 1.3e-09 68.6 49 63.3
AT3G03960 Arabidopsis thaliana HOM05D000278 ORTHO05D004031 1.3e-09 68.6 49 63.3
BcaC05g30297 Brassica carinata HOM05D000278 ORTHO05D004031 1.3e-09 68.6 49 63.3
BcaC09g47768 Brassica carinata HOM05D000278 ORTHO05D004031 1.3e-09 68.6 49 63.3
A01p41240 Brassica napus HOM05D000278 ORTHO05D004031 1.3e-09 68.6 49 63.3
A03p33480 Brassica napus HOM05D000278 ORTHO05D004031 1.3e-09 68.6 49 63.3
BNapus_Darmor_BZH_scaffold_78p00470 Brassica napus HOM05D000278 ORTHO05D004031 1.3e-09 68.6 49 63.3
BolC1t05791H Brassica oleracea HOM05D000278 ORTHO05D004031 1.3e-09 68.6 49 63.3
BolC1t05795H Brassica oleracea HOM05D000278 ORTHO05D004031 1.3e-09 68.6 49 63.3
BraA01t04547Z Brassica rapa HOM05D000278 ORTHO05D004031 1.3e-09 68.6 49 63.3
BraA03t12523Z Brassica rapa HOM05D000278 ORTHO05D004031 1.3e-09 68.6 49 63.3
Medtr1g030650 Medicago truncatula HOM05D000278 ORTHO05D004031 1.3e-09 68.6 49 63.3
QL07p019694 Quercus lobata HOM05D000278 ORTHO05D004031 1.3e-09 68.6 49 63.3
QL07p030735 Quercus lobata HOM05D000278 ORTHO05D004031 1.3e-09 68.6 49 63.3
TPR.G34618 Trifolium pratense HOM05D000278 ORTHO05D004031 1.3e-09 68.6 49 63.3
TAR369G0685 Trochodendron aralioides HOM05D000278 ORTHO05D004031 1.3e-09 68.6 49 61.2
TAR623G0935 Trochodendron aralioides HOM05D000278 ORTHO05D004031 1.3e-09 68.6 49 61.2
BolC3t16333H Brassica oleracea HOM05D000278 ORTHO05D004031 1.7e-09 68.2 49 63.3
Ciclev10019583m.g Citrus clementina HOM05D000278 ORTHO05D004031 1.7e-09 68.2 49 63.3
Duzib177G1081 Durio zibethinus HOM05D000278 ORTHO05D004031 1.7e-09 68.2 49 61.2
FAN02G2614 Fragaria x ananassa HOM05D000278 ORTHO05D004031 1.7e-09 68.2 49 67.3
Glyma.16G153200 Glycine max HOM05D000278 ORTHO05D004031 1.7e-09 68.2 49 63.3
Lj8A582T9 Lonicera japonica HOM05D000278 ORTHO05D004031 1.7e-09 68.2 49 61.2
MBI01_g27917_MAGBIO Magnolia biondii HOM05D002142 ORTHO05D004031 1.7e-09 68.2 49 61.2
THA.LOC104820734 Tarenaya hassleriana HOM05D000278 ORTHO05D004031 1.7e-09 68.2 49 63.3
CSS0000727 Camellia sinensis var. sinensis HOM05D000278 ORTHO05D004031 2.2e-09 67.8 49 63.3
CSS0002970 Camellia sinensis var. sinensis HOM05D000278 ORTHO05D004031 2.2e-09 67.8 49 63.3
CSS0033021 Camellia sinensis var. sinensis HOM05D000278 ORTHO05D004031 2.2e-09 67.8 49 63.3
CSS0036387 Camellia sinensis var. sinensis HOM05D000278 ORTHO05D004031 2.2e-09 67.8 49 63.3
AUR62032060 Chenopodium quinoa HOM05D000278 ORTHO05D004031 2.2e-09 67.8 49 61.2
AUR62032687 Chenopodium quinoa HOM05D000278 ORTHO05D004031 2.2e-09 67.8 49 61.2
Haze_19414 Corylus avellana HOM05D000278 ORTHO05D004031 2.2e-09 67.8 49 63.3
Dinv14581 Davidia involucrata HOM05D000278 ORTHO05D004031 2.2e-09 67.8 49 61.2
Migut.C00324 Erythranthe guttata HOM05D000278 ORTHO05D004031 2.2e-09 67.8 49 61.2
FAN05G2827 Fragaria x ananassa HOM05D000278 ORTHO05D004031 2.2e-09 67.8 49 65.3
Lj1A1137T80 Lonicera japonica HOM05D000278 ORTHO05D004031 2.2e-09 67.8 49 61.2
MD09G1235600 Malus domestica HOM05D000278 ORTHO05D004031 2.2e-09 67.8 49 65.3
MD17G1264300 Malus domestica HOM05D000278 ORTHO05D004031 2.2e-09 67.8 49 65.3
SMO353G0351 Selaginella moellendorffii HOM05D000278 ORTHO05D004031 2.2e-09 67.8 48 60.4
Gohir.A11G258900 Gossypium hirsutum HOM05D000278 ORTHO05D004031 2.9e-09 67.4 49 61.2
Gohir.D11G269000 Gossypium hirsutum HOM05D000278 ORTHO05D004031 2.9e-09 67.4 49 61.2
RcHm_v2.0_Chr2g0130701 Rosa chinensis HOM05D000278 ORTHO05D004031 2.9e-09 67.4 49 65.3
SEGI_02619 Sequoiadendron giganteum HOM05D001389 ORTHO05D002892 2.9e-09 67.4 42 78.6
Thecc.05G294000 Theobroma cacao HOM05D000278 ORTHO05D004031 2.9e-09 67.4 49 61.2
vmacro12568 Vaccinium macrocarpon HOM05D000278 ORTHO05D004031 2.9e-09 67.4 46 67.4
Gorai.007G288800 Gossypium raimondii HOM05D000278 ORTHO05D004031 3.7e-09 67.0 49 59.2
Medtr6g032870 Medicago truncatula HOM05D000278 ORTHO05D004031 3.7e-09 67.0 49 61.2
SEGI_06663 Sequoiadendron giganteum HOM05D001389 ORTHO05D002892 3.7e-09 67.0 43 69.8
CiPaw.06G089700 Carya illinoinensis HOM05D000278 ORTHO05D004031 4.9e-09 66.6 105 39.0
Migut.J01891 Erythranthe guttata HOM05D000278 ORTHO05D004031 4.9e-09 66.6 49 59.2
THA.LOC104802866 Tarenaya hassleriana HOM05D000278 ORTHO05D004031 4.9e-09 66.6 49 63.3
COL.COLO4_13606 Corchorus olitorius HOM05D000278 ORTHO05D004031 6.4e-09 66.2 49 59.2
Phvul.004G079800 Phaseolus vulgaris HOM05D000278 ORTHO05D004031 6.4e-09 66.2 81 44.4
Pp3c15_13410 Physcomitrium patens HOM05D000278 ORTHO05D004031 6.4e-09 66.2 49 59.2
Pp3c15_13420 Physcomitrium patens HOM05D000278 ORTHO05D004031 6.4e-09 66.2 49 59.2
SalBow8G1634 Salvia bowleyana HOM05D000278 ORTHO05D004031 6.4e-09 66.2 49 61.2
Duzib106G1656 Durio zibethinus HOM05D000278 ORTHO05D004031 8.3e-09 65.9 49 59.2
VMungo0464G1078 Vigna mungo HOM05D000278 ORTHO05D004031 8.3e-09 65.9 81 44.4
ATR0697G160 Amborella trichopoda HOM05D000278 ORTHO05D004031 1.1e-08 65.5 49 59.2
MBI07_g03720_MAGBIO Magnolia biondii HOM05D002142 ORTHO05D002544 1.1e-08 65.5 49 61.2
Ah.13g075330 Amaranthus hybridus HOM05D000278 ORTHO05D004031 1.4e-08 65.1 49 61.2
CAN.G410.8 Capsicum annuum HOM05D000278 ORTHO05D004031 1.4e-08 65.1 49 61.2
Peaxi162Scf01108g00120 Petunia axillaris HOM05D000278 ORTHO05D004031 1.4e-08 65.1 49 61.2
QL07p030356 Quercus lobata HOM05D000278 ORTHO05D004031 1.4e-08 65.1 47 63.8
Solyc01g088080.3 Solanum lycopersicum HOM05D000278 ORTHO05D004031 1.4e-08 65.1 49 61.2
PGSC0003DMG400006829 Solanum tuberosum HOM05D000278 ORTHO05D004031 1.4e-08 65.1 49 61.2
Atru.chr2.1362 Acer truncatum HOM05D000278 ORTHO05D004031 1.9e-08 64.7 46 65.2
Glyma.02G071900 Glycine max HOM05D000278 ORTHO05D004031 1.9e-08 64.7 105 38.1
Psat0s2522g0160 Pisum sativum HOM05D000278 ORTHO05D004031 1.9e-08 64.7 49 59.2
Manes.09G141800 Manihot esculenta HOM05D000278 ORTHO05D004031 2.4e-08 64.3 49 59.2
Lj1g0028009 Lotus japonicus HOM05D000278 ORTHO05D004031 3.2e-08 63.9 49 59.2
Sed0026355 Sechium edule HOM05D000278 ORTHO05D004031 3.2e-08 63.9 49 61.2
AagrBONN_evm.TU.Sc2ySwM_117.3360 Anthoceros agrestis HOM05D000278 ORTHO05D004031 5.4e-08 63.2 60 53.3
Eucgr.A02095 Eucalyptus grandis HOM05D000278 ORTHO05D004031 5.4e-08 63.2 49 61.2
Nitab4.5_0002187g0060 Nicotiana tabacum HOM05D000278 ORTHO05D004031 5.4e-08 63.2 47 61.7
SGA_v2.0_scaffold274G46518 Striga asiatica HOM05D000278 ORTHO05D004031 5.4e-08 63.2 82 41.5
MSTRG.10861 Avicennia marina HOM05D000278 ORTHO05D004031 7.0e-08 62.8 49 57.1
MSTRG.26066 Avicennia marina HOM05D000278 ORTHO05D004031 7.0e-08 62.8 49 55.1
Ca_04492_v3 Cicer arietinum L. HOM05D000278 ORTHO05D004031 7.0e-08 62.8 105 37.1
Nitab4.5_0006695g0030 Nicotiana tabacum HOM05D000278 ORTHO05D004031 7.0e-08 62.8 47 61.7
PSO013G0403 Papaver somniferum HOM05D000278 ORTHO05D004031 7.0e-08 62.8 49 59.2
Sopen01g034950 Solanum pennellii HOM05D000278 ORTHO05D004031 7.0e-08 62.8 49 59.2
Manes.08G143700 Manihot esculenta HOM05D000278 ORTHO05D004031 9.2e-08 62.4 49 59.2
PSO063G2497 Papaver somniferum HOM05D000278 ORTHO05D004031 9.2e-08 62.4 99 44.4
Sed0013215 Sechium edule HOM05D000278 ORTHO05D004031 9.2e-08 62.4 49 57.1
SEGI_06882 Sequoiadendron giganteum HOM05D000802 ORTHO05D001074 9.2e-08 62.4 33 90.9
Cc06_g22900 Coffea canephora HOM05D000278 ORTHO05D004031 1.2e-07 62.0 49 57.1
unitig_899.g15071 Utricularia gibba HOM05D000861 ORTHO05D004031 1.2e-07 62.0 82 41.5
Gohir.A11G296700 Gossypium hirsutum HOM05D000278 ORTHO05D004031 1.6e-07 61.6 49 59.2
Gohir.D11G310200 Gossypium hirsutum HOM05D000278 ORTHO05D004031 1.6e-07 61.6 49 59.2
Gorai.007G343600 Gossypium raimondii HOM05D000278 ORTHO05D004031 1.6e-07 61.6 49 59.2
Gohir.D11G312410 Gossypium hirsutum HOM05D000278 ORTHO05D004031 2.7e-07 60.8 49 59.2
Peaxi162Scf00071g00913 Petunia axillaris HOM05D000278 ORTHO05D004031 2.7e-07 60.8 105 35.2
BcaC05g30238 Brassica carinata HOM05D000278 ORTHO05D004031 4.6e-07 60.1 35 74.3
C02p21770 Brassica napus HOM05D000278 ORTHO05D004031 6.0e-07 59.7 49 59.2
BolC2t08311H Brassica oleracea HOM05D000278 ORTHO05D004031 6.0e-07 59.7 49 59.2
Lalb_Chr21g0316131 Lupinus albus HOM05D000278 ORTHO05D004031 6.0e-07 59.7 49 57.1
Lalb_Chr21g0316151 Lupinus albus HOM05D000278 ORTHO05D004031 6.0e-07 59.7 49 57.1
Hund24836 Selenicereus undatus HOM05D000278 ORTHO05D004031 1.3e-06 58.5 39 64.1
Mapoly0052s0054 Marchantia polymorpha HOM05D000278 ORTHO05D004031 2.3e-06 57.8 81 40.7
BolC6t38139H Brassica oleracea HOM05D000278 ORTHO05D004031 3.0e-06 57.4 49 57.1
C06p29780 Brassica napus HOM05D000278 ORTHO05D004031 8.6e-06 55.8 49 57.1


User provided reference genes

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