Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SEGI_40123 Sequoiadendron giganteum HOM05D002380 ORTHO05D008286 1.4e-43 179.1 85 100.0
SEGI_28059 Sequoiadendron giganteum HOM05D002380 ORTHO05D008286 1.5e-24 115.9 56 100.0
Zm00001eb179140 Zea mays HOM05D002380 ORTHO05D008286 2.4e-14 82.0 58 70.7
Ah.15g091260 Amaranthus hybridus HOM05D002380 ORTHO05D008286 5.3e-14 80.9 53 69.8
PGR042G3960 Punica granatum HOM05D002380 ORTHO05D008286 5.3e-14 80.9 58 70.7
Actinidia13740 Actinidia chinensis HOM05D002380 ORTHO05D008286 6.9e-14 80.5 42 88.1
ClCG02G002150 Citrullus lanatus HOM05D002380 ORTHO05D008286 6.9e-14 80.5 42 88.1
CsaV3_7G003340 Cucumis sativus L. HOM05D002380 ORTHO05D008286 6.9e-14 80.5 42 88.1
Lj1A778T40 Lonicera japonica HOM05D002380 ORTHO05D008286 6.9e-14 80.5 49 75.5
Os08g0422000 Oryza sativa ssp. japonica HOM05D002380 ORTHO05D008286 6.9e-14 80.5 42 88.1
Sed0027871 Sechium edule HOM05D002380 ORTHO05D008286 6.9e-14 80.5 42 88.1
CAN.G855.60 Capsicum annuum HOM05D002380 ORTHO05D008286 9.0e-14 80.1 43 83.7
CSS0029680 Camellia sinensis var. sinensis HOM05D002380 ORTHO05D008286 1.5e-13 79.3 50 76.0
Mapoly0041s0126 Marchantia polymorpha HOM05D002380 ORTHO05D008286 1.5e-13 79.3 43 81.4
Nn1g03403 Nelumbo nucifera HOM05D002380 ORTHO05D008286 1.5e-13 79.3 42 85.7
SalBow1G6561 Salvia bowleyana HOM05D002380 ORTHO05D008286 1.5e-13 79.3 49 75.5
Nitab4.5_0005164g0050 Nicotiana tabacum HOM05D002380 ORTHO05D006960 2.0e-13 79.0 42 83.3
Solyc01g102950.3 Solanum lycopersicum HOM05D002380 ORTHO05D008286 2.0e-13 79.0 42 83.3
Sopen01g045360 Solanum pennellii HOM05D002380 ORTHO05D008286 2.0e-13 79.0 42 83.3
PGSC0003DMG400020719 Solanum tuberosum HOM05D002380 ORTHO05D008286 2.0e-13 79.0 42 83.3
Carub.0004s1397 Capsella rubella HOM05D002380 ORTHO05D008286 2.6e-13 78.6 42 85.7
Cpa.g.sc132.4 Carica papaya HOM05D002380 ORTHO05D008286 2.6e-13 78.6 51 72.5
Migut.H01235 Erythranthe guttata HOM05D002380 ORTHO05D008286 2.6e-13 78.6 42 85.7
TAR626G1235 Trochodendron aralioides HOM05D002380 ORTHO05D008286 3.4e-13 78.2 42 83.3
Ciclev10014719m.g Citrus clementina HOM05D002380 ORTHO05D008286 4.5e-13 77.8 42 81.0
Potri.014G156800 Populus trichocarpa HOM05D002380 ORTHO05D008286 4.5e-13 77.8 42 81.0
RcHm_v2.0_Chr2g0158461 Rosa chinensis HOM05D002380 ORTHO05D008286 4.5e-13 77.8 58 67.2
CiPaw.04G112000 Carya illinoinensis HOM05D002380 ORTHO05D008286 5.9e-13 77.4 42 85.7
Pp3c11_22720 Physcomitrium patens HOM05D002380 ORTHO05D008286 5.9e-13 77.4 42 81.0
CANSAT64G0203 Cannabis sativa HOM05D002380 ORTHO05D008286 7.7e-13 77.0 42 83.3
FvH4_6g42610 Fragaria vesca HOM05D002380 ORTHO05D008286 7.7e-13 77.0 58 67.2
Sabra14G0118600 Salix brachista HOM05D002380 ORTHO05D008286 7.7e-13 77.0 42 78.6
Hund20419 Selenicereus undatus HOM05D002380 ORTHO05D008286 7.7e-13 77.0 42 83.3
HPP92_026432 Vanilla planifolia HOM05D002380 ORTHO05D008286 7.7e-13 77.0 42 83.3
GSVIVG01030484001 Vitis vinifera HOM05D002380 ORTHO05D008286 7.7e-13 77.0 42 83.3
Aqoxy1G02993 Aquilegia oxysepala HOM05D002380 ORTHO05D008286 1.0e-12 76.6 42 83.3
arahy.Tifrunner.gnm1.ann1.C2B2I7 Arachis hypogaea HOM05D002380 ORTHO05D008286 1.0e-12 76.6 47 74.5
arahy.Tifrunner.gnm1.ann1.Y9X1U6 Arachis hypogaea HOM05D002380 ORTHO05D008286 1.0e-12 76.6 47 74.5
Gohir.A07G186600 Gossypium hirsutum HOM05D002380 ORTHO05D008286 1.0e-12 76.6 42 83.3
Gohir.D07G193100 Gossypium hirsutum HOM05D002380 ORTHO05D008286 1.0e-12 76.6 42 83.3
Gorai.001G216200 Gossypium raimondii HOM05D002380 ORTHO05D008286 1.0e-12 76.6 42 83.3
Prupe.3G212600 Prunus persica HOM05D002380 ORTHO05D008286 1.0e-12 76.6 50 72.0
Thecc.01G180100 Theobroma cacao HOM05D002380 ORTHO05D008286 1.0e-12 76.6 42 83.3
Ca_06119_v3 Cicer arietinum L. HOM05D002380 ORTHO05D008286 1.3e-12 76.3 42 83.3
Duzib138G0368 Durio zibethinus HOM05D002380 ORTHO05D008286 1.3e-12 76.3 42 81.0
ECA234G2702 Erigeron canadensis HOM05D002380 ORTHO05D008286 1.3e-12 76.3 42 81.0
Glyma.14G046600 Glycine max HOM05D002380 ORTHO05D008286 1.3e-12 76.3 42 83.3
Medtr8g465870 Medicago truncatula HOM05D002380 ORTHO05D008286 1.3e-12 76.3 42 83.3
Psat0s2606g0080 Pisum sativum HOM05D002380 ORTHO05D008286 1.3e-12 76.3 42 83.3
SalBow1G4831 Salvia bowleyana HOM05D002380 ORTHO05D008286 1.3e-12 76.3 49 73.5
CDE04G2212 Ceratophyllum demersum HOM05D002380 ORTHO05D008286 1.7e-12 75.9 42 81.0
DCAR_019750 Daucus carota HOM05D002380 ORTHO05D008286 1.7e-12 75.9 42 78.6
Lsat_1_v5_gn_5_123621 Lactuca sativa HOM05D002380 ORTHO05D008286 1.7e-12 75.9 42 81.0
Phvul.008G211500 Phaseolus vulgaris HOM05D002380 ORTHO05D008286 1.7e-12 75.9 42 83.3
VMungo0647G2578 Vigna mungo HOM05D002380 ORTHO05D008286 1.7e-12 75.9 42 83.3
Aa31LG5G4710 Aethionema arabicum HOM05D002380 ORTHO05D008286 2.2e-12 75.5 42 83.3
AL4G28040 Arabidopsis lyrata HOM05D002380 ORTHO05D008286 2.2e-12 75.5 42 83.3
BcaC01g05900 Brassica carinata HOM05D002380 ORTHO05D008286 2.2e-12 75.5 42 83.3
A03p18220 Brassica napus HOM05D002380 ORTHO05D008286 2.2e-12 75.5 42 83.3
C03p21270 Brassica napus HOM05D002380 ORTHO05D008286 2.2e-12 75.5 42 83.3
BolC3t14508H Brassica oleracea HOM05D002380 ORTHO05D008286 2.2e-12 75.5 42 83.3
BraA03t11082Z Brassica rapa HOM05D002380 ORTHO05D008286 2.2e-12 75.5 42 83.3
CARHR126480 Cardamine hirsuta HOM05D002380 ORTHO05D008286 2.2e-12 75.5 42 83.3
CBR_g8452 Chara braunii HOM05D002380 ORTHO05D008286 2.2e-12 75.5 41 85.4
HanXRQChr10g0306601 Helianthus annuus HOM05D002380 ORTHO05D008286 2.2e-12 75.5 42 78.6
LjContig00564g0004339 Lotus japonicus HOM05D002380 ORTHO05D008286 2.2e-12 75.5 42 81.0
PSO541G2284 Papaver somniferum HOM05D002380 ORTHO05D008286 2.2e-12 75.5 49 69.4
PSO675G4452 Papaver somniferum HOM05D002380 ORTHO05D008286 2.2e-12 75.5 49 69.4
Sp4g14960 Schrenkiella parvula HOM05D002380 ORTHO05D008286 2.2e-12 75.5 42 83.3
THA.LOC104826140 Tarenaya hassleriana HOM05D002380 ORTHO05D008286 2.2e-12 75.5 42 83.3
TWI18G0959 Tripterygium wilfordii HOM05D002380 ORTHO05D008286 2.2e-12 75.5 48 70.8
Cfa014331 Carpinus fangiana HOM05D002380 ORTHO05D008286 2.9e-12 75.1 42 81.0
Eucgr.A01100 Eucalyptus grandis HOM05D002380 ORTHO05D008286 2.9e-12 75.1 42 81.0
Atru.chr6.3236 Acer truncatum HOM05D002380 ORTHO05D008286 3.8e-12 74.7 42 81.0
BcaB01g03970 Brassica carinata HOM05D002380 ORTHO05D008286 3.8e-12 74.7 42 81.0
Hma1.2p1_0445F.1_g154520 Hydrangea macrophylla HOM05D002380 ORTHO05D008286 3.8e-12 74.7 42 78.6
Hma1.2p1_0895F.1_g233700 Hydrangea macrophylla HOM05D002380 ORTHO05D008286 3.8e-12 74.7 42 78.6
LjContig00564g0001978 Lotus japonicus HOM05D002380 ORTHO05D008286 5.0e-12 74.3 42 81.0
MD09G1112100 Malus domestica HOM05D002380 ORTHO05D008286 5.0e-12 74.3 42 81.0
ATR0059G008 Amborella trichopoda HOM05D002380 ORTHO05D008286 6.5e-12 73.9 42 81.0
Manes.12G071600 Manihot esculenta HOM05D002380 ORTHO05D008286 6.5e-12 73.9 42 78.6
Peaxi162Scf00011g02118 Petunia axillaris HOM05D002380 ORTHO05D008286 6.5e-12 73.9 40 80.0
AUR62037919 Chenopodium quinoa HOM05D002380 ORTHO05D008286 8.5e-12 73.6 42 78.6
AUR62040170 Chenopodium quinoa HOM05D002380 ORTHO05D008286 8.5e-12 73.6 42 78.6
AUR62044039 Chenopodium quinoa HOM05D002380 ORTHO05D008286 8.5e-12 73.6 42 78.6
Thhalv10016422m.g Eutrema salsugineum HOM05D002380 ORTHO05D008286 1.1e-11 73.2 42 81.0
Lalb_Chr04g0249901 Lupinus albus HOM05D002380 ORTHO05D008286 1.1e-11 73.2 42 78.6
QL08p031162 Quercus lobata HOM05D002380 ORTHO05D008286 1.1e-11 73.2 42 81.0
EL10Ac7g16733 Beta vulgaris HOM05D002380 ORTHO05D008286 1.9e-11 72.4 42 76.2
Cc05_g03220 Coffea canephora HOM05D002380 ORTHO05D008286 3.2e-11 71.6 42 76.2
AagrBONN_evm.TU.Sc2ySwM_368.2332 Anthoceros agrestis HOM05D002380 ORTHO05D008286 7.2e-11 70.5 42 78.6
FAN14G4830 Fragaria x ananassa HOM05D002380 ORTHO05D008286 2.1e-10 68.9 73 54.8
Cre06.g264250 Chlamydomonas reinhardtii HOM05D002380 ORTHO05D008286 1.8e-09 65.9 43 60.5
Dinv08737 Davidia involucrata HOM05D002380 ORTHO05D008286 8.8e-09 63.5 35 82.9
FAN05G1087 Fragaria x ananassa HOM05D002380 ORTHO05D008286 8.8e-09 63.5 87 46.0
Cre04.g221550 Chlamydomonas reinhardtii HOM05D002380 ORTHO05D008286 3.3e-08 61.6 41 65.9
FAN02G0433 Fragaria x ananassa HOM05D002380 ORTHO05D008286 9.7e-08 60.1 48 64.6
Rhsim06G0166100 Rhododendron simsii HOM05D002380 ORTHO05D008286 1.7e-07 59.3 39 71.8
vmacro12176 Vaccinium macrocarpon HOM05D002380 ORTHO05D008286 1.7e-07 59.3 39 71.8
MELO3C018839.2 Cucumis melo HOM05D002380 ORTHO05D008286 3.7e-07 58.2 31 83.9
Sc21g0001190 Simmondsia chinensis HOM05D002380 ORTHO05D008286 3.7e-07 58.2 49 61.2
SGA_v2.0_scaffold159G37563 Striga asiatica HOM05D002380 ORTHO05D001198 6.3e-07 57.4 31 80.6


User provided reference genes

Program Settings