Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SEGI_40021 Sequoiadendron giganteum HOM05D003008 ORTHO05D003346 1.0e-125 453.4 222 100.0
SEGI_06105 Sequoiadendron giganteum HOM05D000023 ORTHO05D000014 2.0e-52 209.9 127 87.4
TPR.G15179 Trifolium pratense HOM05D003008 ORTHO05D003346 4.0e-45 185.7 103 80.6
TWI15G0228 Tripterygium wilfordii HOM05D003008 ORTHO05D003346 1.2e-44 184.1 103 78.6
ATR0763G210 Amborella trichopoda HOM05D003008 ORTHO05D003346 2.6e-44 183.0 103 76.7
Zm00001eb274090 Zea mays HOM05D003008 ORTHO05D003346 2.6e-44 183.0 140 62.9
vmacro03472 Vaccinium macrocarpon HOM05D003008 ORTHO05D003346 3.4e-44 182.6 103 78.6
SEGI_26502 Sequoiadendron giganteum HOM05D003008 ORTHO05D003346 7.5e-44 181.4 103 78.6
Lj6g0020929 Lotus japonicus HOM05D003008 ORTHO05D003346 2.2e-43 179.9 108 74.1
SalBow8G1512 Salvia bowleyana HOM05D003008 ORTHO05D003346 2.2e-43 179.9 103 78.6
THA.LOC104798583 Tarenaya hassleriana HOM05D003008 ORTHO05D003346 2.2e-43 179.9 103 76.7
VMungo0540G1323 Vigna mungo HOM05D003008 ORTHO05D003346 2.2e-43 179.9 113 71.7
Sc10g0009650 Simmondsia chinensis HOM05D003008 ORTHO05D003346 2.9e-43 179.5 102 77.5
Haze_13592 Corylus avellana HOM05D003008 ORTHO05D003346 3.7e-43 179.1 103 76.7
Rhsim13G0124600 Rhododendron simsii HOM05D003008 ORTHO05D003346 3.7e-43 179.1 103 76.7
Glyma.15G134500 Glycine max HOM05D003008 ORTHO05D003346 4.9e-43 178.7 103 76.7
CSS0037242 Camellia sinensis var. sinensis HOM05D003008 ORTHO05D003346 6.4e-43 178.3 103 76.7
COL.COLO4_22894 Corchorus olitorius HOM05D003008 ORTHO05D003346 6.4e-43 178.3 103 75.7
Migut.M01920 Erythranthe guttata HOM05D003008 ORTHO05D003346 6.4e-43 178.3 114 71.1
arahy.Tifrunner.gnm1.ann1.447SJP Arachis hypogaea HOM05D003008 ORTHO05D003346 8.3e-43 177.9 100 76.0
arahy.Tifrunner.gnm1.ann1.WH7KDQ Arachis hypogaea HOM05D003008 ORTHO05D003346 8.3e-43 177.9 103 74.8
CDE01G0377 Ceratophyllum demersum HOM05D003008 ORTHO05D003346 8.3e-43 177.9 103 73.8
Ciclev10014667m.g Citrus clementina HOM05D003008 ORTHO05D003346 8.3e-43 177.9 103 77.7
Lalb_Chr18g0058241 Lupinus albus HOM05D003008 ORTHO05D003346 8.3e-43 177.9 117 70.9
Medtr2g031620 Medicago truncatula HOM05D003008 ORTHO05D003346 8.3e-43 177.9 106 75.5
Os06g0671700 Oryza sativa ssp. japonica HOM05D003008 ORTHO05D003346 8.3e-43 177.9 99 77.8
GSVIVG01021728001 Vitis vinifera HOM05D003008 ORTHO05D003346 8.3e-43 177.9 100 76.0
arahy.Tifrunner.gnm1.ann1.7QV6JY Arachis hypogaea HOM05D003008 ORTHO05D003346 1.1e-42 177.6 99 76.8
EL10Ac8g19523 Beta vulgaris HOM05D003008 ORTHO05D003346 1.1e-42 177.6 101 77.2
Cfa023567 Carpinus fangiana HOM05D003008 ORTHO05D003346 1.1e-42 177.6 103 75.7
MELO3C002865.2 Cucumis melo HOM05D003008 ORTHO05D003346 1.1e-42 177.6 112 72.3
FAN21G3776 Fragaria x ananassa HOM05D003008 ORTHO05D003346 1.4e-42 177.2 103 77.7
Lalb_Chr15g0088941 Lupinus albus HOM05D003008 ORTHO05D003346 1.4e-42 177.2 103 75.7
Psat1g164800 Pisum sativum HOM05D003008 ORTHO05D003346 1.4e-42 177.2 104 75.0
Potri.001G461300 Populus trichocarpa HOM05D003008 ORTHO05D003346 1.4e-42 177.2 102 75.5
PGR044G1782 Punica granatum HOM05D003008 ORTHO05D003346 1.4e-42 177.2 103 76.7
Aa31LG6G11900 Aethionema arabicum HOM05D003008 ORTHO05D003346 1.9e-42 176.8 103 74.8
DCAR_000835 Daucus carota HOM05D003008 ORTHO05D003346 1.9e-42 176.8 113 74.3
MBI02_g32311_MAGBIO Magnolia biondii HOM05D003008 ORTHO05D003346 1.9e-42 176.8 103 76.7
Aqoxy1G01512 Aquilegia oxysepala HOM05D003008 ORTHO05D003346 2.4e-42 176.4 133 60.9
Dinv08829 Davidia involucrata HOM05D003008 ORTHO05D003346 2.4e-42 176.4 103 74.8
Nn7g37799 Nelumbo nucifera HOM05D003008 ORTHO05D003346 2.4e-42 176.4 103 73.8
Actinidia33712 Actinidia chinensis HOM05D003008 ORTHO05D003346 3.2e-42 176.0 103 74.8
Eucgr.D01628 Eucalyptus grandis HOM05D003008 ORTHO05D003346 3.2e-42 176.0 103 73.8
FvH4_3g11220 Fragaria vesca HOM05D003008 ORTHO05D003346 3.2e-42 176.0 103 76.7
Lsat_1_v5_gn_1_91720 Lactuca sativa HOM05D003008 ORTHO05D003346 3.2e-42 176.0 103 73.8
Manes.14G125700 Manihot esculenta HOM05D003008 ORTHO05D003346 3.2e-42 176.0 102 76.5
RcHm_v2.0_Chr5g0018171 Rosa chinensis HOM05D003008 ORTHO05D003346 3.2e-42 176.0 103 76.7
Ca_25498_v3 Cicer arietinum L. HOM05D003008 ORTHO05D003346 4.1e-42 175.6 103 74.8
Phvul.006G124400 Phaseolus vulgaris HOM05D003008 ORTHO05D003346 4.1e-42 175.6 103 75.7
Sabra16G0313000 Salix brachista HOM05D003008 ORTHO05D003346 5.4e-42 175.3 102 75.5
Thhalv10006950m.g Eutrema salsugineum HOM05D003008 ORTHO05D003346 7.0e-42 174.9 103 73.8
Glyma.09G028600 Glycine max HOM05D003008 ORTHO05D003346 7.0e-42 174.9 103 74.8
BcaB07g32707 Brassica carinata HOM05D003008 ORTHO05D003346 9.2e-42 174.5 103 73.8
BcaC05g27092 Brassica carinata HOM05D003008 ORTHO05D003346 9.2e-42 174.5 103 73.8
A09p35720 Brassica napus HOM05D003008 ORTHO05D003346 9.2e-42 174.5 103 73.8
C05p29740 Brassica napus HOM05D003008 ORTHO05D003346 9.2e-42 174.5 103 73.8
BolC5t31702H Brassica oleracea HOM05D003008 ORTHO05D003346 9.2e-42 174.5 103 73.8
BraA09t39097Z Brassica rapa HOM05D003008 ORTHO05D003346 9.2e-42 174.5 103 73.8
CiPaw.03G113700 Carya illinoinensis HOM05D003008 ORTHO05D003346 9.2e-42 174.5 122 65.6
Cc09_g07360 Coffea canephora HOM05D003008 ORTHO05D003346 9.2e-42 174.5 103 73.8
Duzib235G1093 Durio zibethinus HOM05D003008 ORTHO05D003346 9.2e-42 174.5 103 72.8
Oeu060320.2 Olea europaea HOM05D003008 ORTHO05D003346 9.2e-42 174.5 100 76.0
Solyc02g022830.3 Solanum lycopersicum HOM05D003008 ORTHO05D003346 9.2e-42 174.5 103 73.8
Sopen02g006420 Solanum pennellii HOM05D003008 ORTHO05D003346 9.2e-42 174.5 103 73.8
MD10G1243800 Malus domestica HOM05D003008 ORTHO05D003346 1.2e-41 174.1 103 73.8
Nitab4.5_0000076g0040 Nicotiana tabacum HOM05D003008 ORTHO05D003346 1.2e-41 174.1 103 72.8
GSVIVG01008778001 Vitis vinifera HOM05D003008 ORTHO05D003346 1.2e-41 174.1 103 72.8
QL03p057306 Quercus lobata HOM05D003008 ORTHO05D003346 1.6e-41 173.7 122 67.2
SEGI_18143 Sequoiadendron giganteum HOM05D000003 ORTHO05D000004 1.6e-41 173.7 108 82.4
CAN.G39.25 Capsicum annuum HOM05D003008 ORTHO05D003346 2.0e-41 173.3 114 67.5
ECA248G0148 Erigeron canadensis HOM05D003008 ORTHO05D003346 2.0e-41 173.3 103 71.8
Prupe.4G099700 Prunus persica HOM05D003008 ORTHO05D003346 2.0e-41 173.3 103 75.7
AUR62025821 Chenopodium quinoa HOM05D003008 ORTHO05D003346 3.5e-41 172.6 102 73.5
AUR62029886 Chenopodium quinoa HOM05D003008 ORTHO05D003346 3.5e-41 172.6 102 73.5
Gohir.A05G112501 Gossypium hirsutum HOM05D003008 ORTHO05D003346 3.5e-41 172.6 103 73.8
Thecc.06G011200 Theobroma cacao HOM05D003008 ORTHO05D003346 3.5e-41 172.6 103 72.8
Atru.chr10.699 Acer truncatum HOM05D003008 ORTHO05D003346 6.0e-41 171.8 102 74.5
Lj2A336T37 Lonicera japonica HOM05D003008 ORTHO05D003346 7.8e-41 171.4 103 73.8
Sp1g26580 Schrenkiella parvula HOM05D003008 ORTHO05D003346 7.8e-41 171.4 103 72.8
Gohir.D05G113000 Gossypium hirsutum HOM05D003008 ORTHO05D003346 1.0e-40 171.0 103 72.8
Gorai.009G117100 Gossypium raimondii HOM05D003008 ORTHO05D003346 1.0e-40 171.0 103 72.8
Sed0021502 Sechium edule HOM05D003008 ORTHO05D003346 1.0e-40 171.0 103 73.8
AT1G30680 Arabidopsis thaliana HOM05D003008 ORTHO05D003346 1.3e-40 170.6 122 62.3
CARHR030150 Cardamine hirsuta HOM05D003008 ORTHO05D003346 1.3e-40 170.6 103 70.9
Lj1C1159T8 Lonicera japonica HOM05D003008 ORTHO05D003346 1.3e-40 170.6 103 73.8
SMO364G0389 Selaginella moellendorffii HOM05D003008 ORTHO05D003346 1.3e-40 170.6 100 72.0
Mapoly0003s0305 Marchantia polymorpha HOM05D003008 ORTHO05D003346 1.7e-40 170.2 103 74.8
HanXRQChr01g0020641 Helianthus annuus HOM05D003008 ORTHO05D003346 2.3e-40 169.9 103 72.8
HanXRQChr11g0340941 Helianthus annuus HOM05D003008 ORTHO05D003346 2.3e-40 169.9 103 71.8
Carub.0001s2896 Capsella rubella HOM05D003008 ORTHO05D003346 3.9e-40 169.1 103 71.8
PSO541G5492 Papaver somniferum HOM05D003008 ORTHO05D003346 3.9e-40 169.1 103 70.9
PSO675G7488 Papaver somniferum HOM05D003008 ORTHO05D003346 3.9e-40 169.1 103 70.9
AL1G44740 Arabidopsis lyrata HOM05D003008 ORTHO05D003346 5.0e-40 168.7 103 69.9
CDE02G0274 Ceratophyllum demersum HOM05D003008 ORTHO05D003346 5.0e-40 168.7 103 68.9
Pp3c12_26070 Physcomitrium patens HOM05D003008 ORTHO05D003346 6.6e-40 168.3 103 75.7
Ah.09g232330 Amaranthus hybridus HOM05D000070 ORTHO05D003346 8.6e-40 167.9 128 61.7
SEGI_09809 Sequoiadendron giganteum HOM05D002861 ORTHO05D003104 1.1e-39 167.5 112 79.5
Aqoxy7G01281 Aquilegia oxysepala HOM05D003008 ORTHO05D003346 1.5e-39 167.2 133 58.6
DCAR_007820 Daucus carota HOM05D003008 ORTHO05D003346 1.5e-39 167.2 118 66.9
FAN25G1988 Fragaria x ananassa HOM05D003008 ORTHO05D003346 1.5e-39 167.2 103 72.8
SEGI_40078 Sequoiadendron giganteum HOM05D003637 ORTHO05D004175 1.9e-39 166.8 112 79.5
CsaV3_1G037560 Cucumis sativus L. HOM05D003008 ORTHO05D003346 2.5e-39 166.4 103 71.8
HPP92_013208 Vanilla planifolia HOM05D003008 ORTHO05D003346 2.5e-39 166.4 101 71.3
SEGI_40718 Sequoiadendron giganteum HOM05D001120 ORTHO05D002943 1.2e-38 164.1 109 80.7
AagrBONN_evm.TU.Sc2ySwM_117.1205 Anthoceros agrestis HOM05D003008 ORTHO05D003346 1.6e-38 163.7 103 69.9
SEGI_33516 Sequoiadendron giganteum HOM05D003843 ORTHO05D004646 1.6e-38 163.7 112 77.7
SGA_v2.0_scaffold223G42877 Striga asiatica HOM05D003008 ORTHO05D003346 2.1e-38 163.3 95 75.8
HPP92_005928 Vanilla planifolia HOM05D003008 ORTHO05D003346 6.2e-38 161.8 104 68.3
SEGI_25499 Sequoiadendron giganteum HOM05D000058 ORTHO05D000255 8.1e-38 161.4 112 77.7
SEGI_08767 Sequoiadendron giganteum HOM05D004656 ORTHO05D005404 2.3e-37 159.8 110 76.4
SEGI_18795 Sequoiadendron giganteum HOM05D000055 ORTHO05D000057 3.1e-37 159.5 112 76.8
SEGI_14643 Sequoiadendron giganteum HOM05D003509 ORTHO05D004205 2.6e-36 156.4 118 72.0
SEGI_13519 Sequoiadendron giganteum HOM05D001637 ORTHO05D002178 1.2e-33 147.5 95 81.1
MCO14G370 Micromonas commoda HOM05D003008 ORTHO05D003346 2.1e-33 146.7 100 66.0
SEGI_32695 Sequoiadendron giganteum HOM05D003356 ORTHO05D004362 2.1e-33 146.7 102 78.4
CBR_g16946 Chara braunii HOM05D003008 ORTHO05D003346 2.7e-33 146.4 112 62.5
SEGI_05968 Sequoiadendron giganteum HOM05D003481 ORTHO05D011771 1.0e-32 144.4 104 76.9
SEGI_07692 Sequoiadendron giganteum HOM05D009212 ORTHO05D011771 5.1e-32 142.1 85 87.1
SEGI_27819 Sequoiadendron giganteum HOM05D002658 ORTHO05D003000 1.5e-31 140.6 98 76.5
MD05G1265800 Malus domestica HOM05D003008 ORTHO05D003346 1.2e-30 137.5 79 73.4
Oeu058493.2 Olea europaea HOM05D003008 ORTHO05D003346 1.6e-30 137.1 78 75.6
SHI24823 Sapria himalayana HOM05D003008 ORTHO05D003346 2.1e-30 136.7 77 75.3
SEGI_06890 Sequoiadendron giganteum HOM05D009212 ORTHO05D005404 1.4e-29 134.0 92 76.1
PRCOL_00000580 Prasinoderma coloniale HOM05D003008 ORTHO05D003346 2.0e-28 130.2 117 58.1
SEGI_00308 Sequoiadendron giganteum HOM05D001081 ORTHO05D006714 2.0e-28 130.2 91 74.7
CBR_g38556 Chara braunii HOM05D003008 ORTHO05D003346 2.4e-26 123.2 88 63.6
SEGI_39751 Sequoiadendron giganteum HOM05D004179 ORTHO05D005248 9.2e-26 121.3 99 65.7
FAN16G0127 Fragaria x ananassa HOM05D003008 ORTHO05D003346 1.0e-24 117.9 67 77.6
ClCG03G008470 Citrullus lanatus HOM05D003008 ORTHO05D003346 1.5e-23 114.0 91 64.8
SEGI_22363 Sequoiadendron giganteum HOM05D000931 ORTHO05D002226 8.9e-21 104.8 73 74.0
Cre12.g514950 Chlamydomonas reinhardtii HOM05D003008 ORTHO05D003346 3.4e-20 102.8 121 43.8
SEGI_25267 Sequoiadendron giganteum HOM05D003976 ORTHO05D004711 5.8e-20 102.1 59 88.1
Cre12.g503150 Chlamydomonas reinhardtii HOM05D003008 ORTHO05D003346 2.1e-17 93.6 149 34.9
SEGI_02000 Sequoiadendron giganteum HOM05D000106 ORTHO05D000160 1.3e-14 84.3 50 86.0
unitig_92.g28176 Utricularia gibba HOM05D003008 ORTHO05D003346 3.4e-12 76.3 55 60.0
CANSAT35G1991 Cannabis sativa HOM05D003008 ORTHO05D003346 4.5e-12 75.9 103 43.7
SEGI_23802 Sequoiadendron giganteum HOM05D000003 ORTHO05D000006 4.9e-11 72.4 52 73.1
SEGI_29207 Sequoiadendron giganteum HOM05D002187 ORTHO05D002243 4.2e-10 69.3 70 52.9
SEGI_29730 Sequoiadendron giganteum HOM05D006001 ORTHO05D006714 1.3e-08 64.3 87 46.0
Atru.chr2.1568 Acer truncatum HOM05D003008 ORTHO05D003346 1.9e-07 60.5 33 75.8
SEGI_31845 Sequoiadendron giganteum HOM05D000188 ORTHO05D000362 2.5e-07 60.1 70 47.1
SEGI_15817 Sequoiadendron giganteum HOM05D005999 ORTHO05D003360 3.6e-06 56.2 47 63.8
SEGI_07140 Sequoiadendron giganteum HOM05D000764 ORTHO05D002006 8.1e-06 55.1 51 56.9


User provided reference genes

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