Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SEGI_40001 Sequoiadendron giganteum HOM05D000032 ORTHO05D007443 4.7e-152 541.2 279 100.0
MBI16_g35719_MAGBIO Magnolia biondii HOM05D000032 ORTHO05D007443 6.7e-66 255.0 196 68.9
Nn5g30290 Nelumbo nucifera HOM05D000032 ORTHO05D007443 2.2e-64 250.0 191 67.5
SGA_v2.0_scaffold121G33068 Striga asiatica HOM05D000032 ORTHO05D007443 6.3e-64 248.4 199 65.8
CDE01G0309 Ceratophyllum demersum HOM05D000032 ORTHO05D007443 5.3e-63 245.4 198 65.7
Nitab4.5_0010329g0010 Nicotiana tabacum HOM05D000032 ORTHO05D007443 1.2e-62 244.2 199 67.8
Actinidia36419 Actinidia chinensis HOM05D000032 ORTHO05D007443 4.5e-62 242.3 199 64.8
Nitab4.5_0001225g0240 Nicotiana tabacum HOM05D000032 ORTHO05D007443 5.9e-62 241.9 199 66.8
Sopen02g019260 Solanum pennellii HOM05D000032 ORTHO05D007443 5.9e-62 241.9 197 66.5
CSS0045534 Camellia sinensis var. sinensis HOM05D000032 ORTHO05D007443 1.7e-61 240.4 199 65.3
Solyc02g070100.3 Solanum lycopersicum HOM05D000032 ORTHO05D007443 1.7e-61 240.4 199 65.8
PGSC0003DMG400021177 Solanum tuberosum HOM05D000032 ORTHO05D007443 2.9e-61 239.6 199 66.3
CAN.G79.11 Capsicum annuum HOM05D000032 ORTHO05D007443 3.8e-61 239.2 199 65.8
MSTRG.23651 Avicennia marina HOM05D000032 ORTHO05D007443 6.5e-61 238.4 191 66.0
Dinv23050 Davidia involucrata HOM05D000032 ORTHO05D007443 8.5e-61 238.0 199 64.8
Sc16g0002800 Simmondsia chinensis HOM05D000032 ORTHO05D007443 1.5e-60 237.3 197 63.5
Cc07_g07410 Coffea canephora HOM05D000032 ORTHO05D007443 3.2e-60 236.1 196 63.3
Migut.H00321 Erythranthe guttata HOM05D000032 ORTHO05D007443 3.2e-60 236.1 195 64.6
MD02G1190200 Malus domestica HOM05D000032 ORTHO05D007443 4.2e-60 235.7 199 64.3
PGR102G1941 Punica granatum HOM05D000032 ORTHO05D007443 4.2e-60 235.7 199 62.8
Peaxi162Scf00423g00221 Petunia axillaris HOM05D000032 ORTHO05D007443 9.4e-60 234.6 200 65.5
Rhsim10G0094500 Rhododendron simsii HOM05D000032 ORTHO05D007443 1.2e-59 234.2 199 63.8
TAR381G1241 Trochodendron aralioides HOM05D000032 ORTHO05D007443 1.2e-59 234.2 201 64.2
vmacro04601 Vaccinium macrocarpon HOM05D000032 ORTHO05D007443 1.2e-59 234.2 199 65.8
BraA08t33617Z Brassica rapa HOM05D000032 ORTHO05D007443 1.6e-59 233.8 200 65.5
Oeu014318.2 Olea europaea HOM05D000032 ORTHO05D007443 1.6e-59 233.8 187 67.9
HanXRQChr11g0323571 Helianthus annuus HOM05D000032 ORTHO05D007443 2.1e-59 233.4 198 62.6
Cpa.g.sc125.34 Carica papaya HOM05D000032 ORTHO05D007443 2.7e-59 233.0 196 63.3
Eucgr.H02337 Eucalyptus grandis HOM05D000032 ORTHO05D007443 2.7e-59 233.0 199 63.8
A08p16490 Brassica napus HOM05D000032 ORTHO05D007443 3.6e-59 232.6 200 65.0
Lsat_1_v5_gn_4_158421 Lactuca sativa HOM05D000032 ORTHO05D007443 3.6e-59 232.6 201 63.7
Atru.chr3.1066 Acer truncatum HOM05D000032 ORTHO05D007443 4.7e-59 232.3 205 64.4
ATR0739G078 Amborella trichopoda HOM05D000032 ORTHO05D007443 4.7e-59 232.3 201 63.2
Sp7g32660 Schrenkiella parvula HOM05D000032 ORTHO05D007443 4.7e-59 232.3 199 65.3
Thhalv10024759m.g Eutrema salsugineum HOM05D000032 ORTHO05D007443 6.1e-59 231.9 193 65.3
HPP92_011749 Vanilla planifolia HOM05D000032 ORTHO05D007443 8.0e-59 231.5 195 63.6
GSVIVG01007277001 Vitis vinifera HOM05D000032 ORTHO05D007443 8.0e-59 231.5 199 65.3
BcaC01g00863 Brassica carinata HOM05D000032 ORTHO05D007443 1.0e-58 231.1 194 65.5
BolC3t20823H Brassica oleracea HOM05D000032 ORTHO05D007443 1.0e-58 231.1 194 65.5
Cfa006775 Carpinus fangiana HOM05D000032 ORTHO05D007443 1.0e-58 231.1 190 64.7
PSO541G1009 Papaver somniferum HOM05D000032 ORTHO05D007443 1.0e-58 231.1 201 64.2
PSO675G5622 Papaver somniferum HOM05D000032 ORTHO05D007443 1.4e-58 230.7 201 63.7
AUR62007544 Chenopodium quinoa HOM05D000032 ORTHO05D007443 2.3e-58 229.9 191 63.9
Potri.007G021800 Populus trichocarpa HOM05D000032 ORTHO05D007443 3.0e-58 229.6 201 66.2
Aa31LG2G15600 Aethionema arabicum HOM05D000032 ORTHO05D007443 4.0e-58 229.2 194 65.5
Aa31LG2G15620 Aethionema arabicum HOM05D000032 ORTHO05D007443 4.0e-58 229.2 194 65.5
Ciclev10025201m.g Citrus clementina HOM05D000032 ORTHO05D007443 4.0e-58 229.2 199 64.8
Haze_03984 Corylus avellana HOM05D000032 ORTHO05D007443 4.0e-58 229.2 190 65.3
Prupe.6G216200 Prunus persica HOM05D000032 ORTHO05D007443 5.2e-58 228.8 199 61.8
Manes.13G108500 Manihot esculenta HOM05D000032 ORTHO05D007443 6.7e-58 228.4 199 62.8
Sed0018251 Sechium edule HOM05D000032 ORTHO05D007443 8.8e-58 228.0 196 61.2
CiPaw.08G149900 Carya illinoinensis HOM05D000032 ORTHO05D007443 1.2e-57 227.6 199 62.3
CsaV3_6G044370 Cucumis sativus L. HOM05D000032 ORTHO05D007443 1.5e-57 227.3 196 62.8
QL06p038783 Quercus lobata HOM05D000032 ORTHO05D007443 1.5e-57 227.3 199 63.3
Sed0005463 Sechium edule HOM05D000032 ORTHO05D007443 1.5e-57 227.3 193 62.7
C03p85330 Brassica napus HOM05D000032 ORTHO05D007443 2.0e-57 226.9 200 64.0
ClCG01G017830 Citrullus lanatus HOM05D000032 ORTHO05D007443 2.0e-57 226.9 196 62.8
Sabra07G0018900 Salix brachista HOM05D000032 ORTHO05D007443 2.6e-57 226.5 201 65.2
BraA01t00347Z Brassica rapa HOM05D000032 ORTHO05D007443 5.7e-57 225.3 199 63.3
CANSAT64G0745 Cannabis sativa HOM05D000032 ORTHO05D007443 5.7e-57 225.3 199 62.3
Ah.02g125290 Amaranthus hybridus HOM05D000032 ORTHO05D007443 7.5e-57 224.9 191 63.4
MELO3C007659.2 Cucumis melo HOM05D000032 ORTHO05D007443 7.5e-57 224.9 196 61.7
Duzib147G1507 Durio zibethinus HOM05D000032 ORTHO05D007443 7.5e-57 224.9 191 64.4
A01p03610 Brassica napus HOM05D000032 ORTHO05D007443 9.7e-57 224.6 199 63.3
Lj4C166T2 Lonicera japonica HOM05D000032 ORTHO05D007443 1.7e-56 223.8 210 61.0
AUR62004035 Chenopodium quinoa HOM05D000032 ORTHO05D007443 2.2e-56 223.4 191 63.4
RcHm_v2.0_Chr7g0222281 Rosa chinensis HOM05D000032 ORTHO05D007443 4.8e-56 222.2 197 64.5
Thecc.01G077000 Theobroma cacao HOM05D000032 ORTHO05D007443 8.2e-56 221.5 199 62.3
Hund16419 Selenicereus undatus HOM05D000032 ORTHO05D007443 2.4e-55 219.9 197 64.5
Carub.0007s0539 Capsella rubella HOM05D000032 ORTHO05D007443 3.1e-55 219.5 200 61.5
FAN18G2124 Fragaria x ananassa HOM05D000032 ORTHO05D007443 4.1e-55 219.2 197 64.0
Gohir.D11G211100 Gossypium hirsutum HOM05D000032 ORTHO05D007443 4.1e-55 219.2 191 64.4
FvH4_5g29390 Fragaria vesca HOM05D000032 ORTHO05D007443 5.3e-55 218.8 197 63.5
FAN04G2244 Fragaria x ananassa HOM05D000032 ORTHO05D007443 1.2e-54 217.6 197 62.9
FAN08G0861 Fragaria x ananassa HOM05D000032 ORTHO05D007443 1.2e-54 217.6 198 62.6
AL7G16320 Arabidopsis lyrata HOM05D000032 ORTHO05D007443 1.6e-54 217.2 202 60.4
FAN13G1203 Fragaria x ananassa HOM05D000032 ORTHO05D007443 1.6e-54 217.2 197 62.9
Gohir.A11G211800 Gossypium hirsutum HOM05D000032 ORTHO05D007443 1.6e-54 217.2 191 63.9
AT4G34910 Arabidopsis thaliana HOM05D000032 ORTHO05D007443 2.7e-54 216.5 199 60.3
BcaNung00645 Brassica carinata HOM05D000032 ORTHO05D007443 2.7e-54 216.5 196 61.2
BolC1t00383H Brassica oleracea HOM05D000032 ORTHO05D007443 2.7e-54 216.5 196 61.2
Gorai.007G226800 Gossypium raimondii HOM05D000032 ORTHO05D007443 2.7e-54 216.5 191 63.9
C01p03900 Brassica napus HOM05D000032 ORTHO05D007443 4.5e-54 215.7 193 62.2
COL.COLO4_11621 Corchorus olitorius HOM05D000032 ORTHO05D007443 1.0e-53 214.5 191 61.3
Zm00001eb215620 Zea mays HOM05D000032 ORTHO05D007443 2.2e-53 213.4 194 59.3
BcaB03g11802 Brassica carinata HOM05D000032 ORTHO05D007443 3.8e-53 212.6 208 60.1
THA.LOC104807641 Tarenaya hassleriana HOM05D000032 ORTHO05D007443 6.5e-53 211.8 191 60.7
TWI74G1593 Tripterygium wilfordii HOM05D000032 ORTHO05D007443 1.1e-52 211.1 186 61.8
Os03g0728800 Oryza sativa ssp. japonica HOM05D000032 ORTHO05D007443 1.9e-52 210.3 192 58.3
Lalb_Chr09g0323751 Lupinus albus HOM05D000032 ORTHO05D007443 7.2e-52 208.4 196 58.7
Psat6g149960 Pisum sativum HOM05D000032 ORTHO05D007443 2.1e-51 206.8 201 57.7
EL10Ac6g15590 Beta vulgaris HOM05D000032 ORTHO05D007443 3.6e-51 206.1 185 58.9
Mapoly0062s0065 Marchantia polymorpha HOM05D000032 ORTHO05D007443 3.6e-51 206.1 191 58.1
CARHR243180 Cardamine hirsuta HOM05D000032 ORTHO05D007443 4.7e-51 205.7 202 56.9
DCAR_004695 Daucus carota HOM05D000032 ORTHO05D007443 6.1e-51 205.3 204 57.8
Pp3c27_1430 Physcomitrium patens HOM05D000032 ORTHO05D007443 6.1e-51 205.3 197 59.4
arahy.Tifrunner.gnm1.ann1.MR2VJ3 Arachis hypogaea HOM05D000032 ORTHO05D007443 8.0e-51 204.9 196 57.7
TPR.G6058 Trifolium pratense HOM05D000032 ORTHO05D007443 1.8e-50 203.8 201 57.7
VMungo0720G2333 Vigna mungo HOM05D000032 ORTHO05D007443 1.8e-50 203.8 197 57.9
Phvul.007G179201 Phaseolus vulgaris HOM05D000032 ORTHO05D007443 2.3e-50 203.4 186 59.7
SHI12020 Sapria himalayana HOM05D000278 ORTHO05D007443 2.3e-50 203.4 190 60.0
arahy.Tifrunner.gnm1.ann1.11GZ1T Arachis hypogaea HOM05D000032 ORTHO05D007443 3.0e-50 203.0 196 57.1
CBR_g22358 Chara braunii HOM05D000032 ORTHO05D007443 4.0e-50 202.6 206 55.8
Ca_10121_v3 Cicer arietinum L. HOM05D000032 ORTHO05D007443 6.8e-50 201.8 201 55.2
Glyma.10G152900 Glycine max HOM05D000032 ORTHO05D007443 6.8e-50 201.8 198 57.6
Phvul.007G193500 Phaseolus vulgaris HOM05D000032 ORTHO05D007443 1.5e-49 200.7 186 59.1
Medtr1g083130 Medicago truncatula HOM05D000032 ORTHO05D007443 1.7e-48 197.2 202 55.9
Glyma.20G235400 Glycine max HOM05D000032 ORTHO05D007443 7.0e-47 191.8 157 65.0
Lj5g0020960 Lotus japonicus HOM05D000032 ORTHO05D007443 7.0e-47 191.8 196 54.6
Cpa.g.sc125.31 Carica papaya HOM05D000032 ORTHO05D007443 6.5e-45 185.3 159 62.3
unitig_899.g14589 Utricularia gibba HOM05D000032 ORTHO05D007443 4.4e-41 172.6 128 72.7
HanXRQChr10g0318711 Helianthus annuus HOM05D000032 ORTHO05D007443 1.1e-39 167.9 186 53.2
SMO116G0033 Selaginella moellendorffii HOM05D000032 ORTHO05D007443 6.6e-37 158.7 202 47.0
arahy.Tifrunner.gnm1.ann1.318AHN Arachis hypogaea HOM05D000032 ORTHO05D007443 1.3e-32 144.4 186 48.4
Aqoxy3G01532 Aquilegia oxysepala HOM05D000032 ORTHO05D007443 9.5e-28 128.3 105 66.7
PRCOL_00005286 Prasinoderma coloniale HOM05D000032 ORTHO05D007443 2.1e-27 127.1 185 44.3
MCO01G015 Micromonas commoda HOM05D000032 ORTHO05D007443 6.0e-22 109.0 143 44.1
Cre12.g526850 Chlamydomonas reinhardtii HOM05D000032 ORTHO05D007443 6.6e-21 105.5 237 32.5
SalBow3G3962 Salvia bowleyana HOM05D000032 ORTHO05D026110 4.0e-18 96.3 83 60.2
Cc01_g21860 Coffea canephora HOM05D000032 ORTHO05D007443 2.0e-17 94.0 73 67.1
PSO675G8515 Papaver somniferum HOM05D000032 ORTHO05D007443 7.5e-17 92.0 91 53.8
Cc07_g21210 Coffea canephora HOM05D000032 ORTHO05D007443 1.1e-15 88.2 76 59.2
CAN.G27.58 Capsicum annuum HOM05D000032 ORTHO05D014358 1.4e-15 87.8 98 52.0
CAN.G680.16 Capsicum annuum HOM05D000058 ORTHO05D014358 1.4e-15 87.8 58 74.1
Rhsim02G0087100 Rhododendron simsii HOM05D000032 ORTHO05D007443 4.7e-11 72.8 88 52.3
Thhalv10013368m.g Eutrema salsugineum HOM05D000032 ORTHO05D007443 5.2e-10 69.3 88 47.7
RcHm_v2.0_Chr4g0386971 Rosa chinensis HOM05D000032 ORTHO05D026110 4.9e-08 62.8 79 48.1
RcHm_v2.0_Chr4g0413031 Rosa chinensis HOM05D000032 ORTHO05D026110 1.9e-07 60.8 79 46.8
RcHm_v2.0_Chr4g0405541 Rosa chinensis HOM05D000032 ORTHO05D026110 7.8e-06 55.5 71 50.7


User provided reference genes

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