Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SEGI_39191 Sequoiadendron giganteum HOM05D004427 ORTHO05D005381 1.6e-126 456.1 223 100.0
Ciclev10029217m.g Citrus clementina HOM05D004427 ORTHO05D005381 4.9e-59 231.9 223 53.8
Aqoxy4G03193 Aquilegia oxysepala HOM05D004427 ORTHO05D005381 6.0e-57 224.9 221 52.9
Gohir.D05G078000 Gossypium hirsutum HOM05D004427 ORTHO05D005381 1.7e-56 223.4 218 53.2
COL.COLO4_25263 Corchorus olitorius HOM05D004427 ORTHO05D005381 3.0e-56 222.6 218 52.8
Gohir.A05G075200 Gossypium hirsutum HOM05D004427 ORTHO05D005381 3.0e-56 222.6 218 53.2
Nn2g10653 Nelumbo nucifera HOM05D004427 ORTHO05D005381 3.0e-56 222.6 222 51.8
Gorai.009G079500 Gossypium raimondii HOM05D004427 ORTHO05D005381 3.9e-56 222.2 218 52.8
ATR0069G023 Amborella trichopoda HOM05D004427 ORTHO05D005381 3.3e-55 219.2 214 51.9
ECA233G4215 Erigeron canadensis HOM05D004427 ORTHO05D005381 3.3e-55 219.2 219 51.6
QL01p036593 Quercus lobata HOM05D004427 ORTHO05D005381 1.2e-54 217.2 222 50.9
TPR.G2989 Trifolium pratense HOM05D004427 ORTHO05D005381 3.6e-54 215.7 218 52.8
vmacro14479 Vaccinium macrocarpon HOM05D004427 ORTHO05D005381 3.6e-54 215.7 219 49.8
CSS0010329 Camellia sinensis var. sinensis HOM05D004427 ORTHO05D005381 6.2e-54 214.9 222 50.5
Duzib168G1361 Durio zibethinus HOM05D004427 ORTHO05D005381 6.2e-54 214.9 222 50.0
CiPaw.14G077000 Carya illinoinensis HOM05D004427 ORTHO05D005381 8.1e-54 214.5 233 49.4
Dinv10838 Davidia involucrata HOM05D004427 ORTHO05D005381 8.1e-54 214.5 219 49.8
Eucgr.J00959 Eucalyptus grandis HOM05D004427 ORTHO05D005381 8.1e-54 214.5 218 51.8
CANSAT54G0683 Cannabis sativa HOM05D004427 ORTHO05D005381 2.3e-53 213.0 224 50.4
Thecc.09G261900 Theobroma cacao HOM05D004427 ORTHO05D005381 2.3e-53 213.0 222 50.0
Manes.04G026600 Manihot esculenta HOM05D004427 ORTHO05D005381 3.1e-53 212.6 221 50.7
Hma1.2p1_2156F.1_g315430 Hydrangea macrophylla HOM05D004427 ORTHO05D005381 6.8e-53 211.5 215 47.9
Rhsim01G0221200 Rhododendron simsii HOM05D004427 ORTHO05D005381 6.8e-53 211.5 215 50.2
MSTRG.21151 Avicennia marina HOM05D004427 ORTHO05D005381 8.9e-53 211.1 216 50.5
Psat7g222000 Pisum sativum HOM05D004427 ORTHO05D005381 8.9e-53 211.1 218 53.2
Duzib150G0661 Durio zibethinus HOM05D004427 ORTHO05D005381 1.2e-52 210.7 222 50.5
Lalb_Chr19g0137481 Lupinus albus HOM05D004427 ORTHO05D005381 1.2e-52 210.7 218 50.9
Sopen05g001320 Solanum pennellii HOM05D004427 ORTHO05D005381 1.5e-52 210.3 219 52.1
PGSC0003DMG400013475 Solanum tuberosum HOM05D004427 ORTHO05D005381 1.5e-52 210.3 219 51.6
AUR62037165 Chenopodium quinoa HOM05D004427 ORTHO05D005381 2.6e-52 209.5 218 50.5
FAN25G0902 Fragaria x ananassa HOM05D004427 ORTHO05D005381 2.6e-52 209.5 224 50.9
HanXRQChr02g0051371 Helianthus annuus HOM05D004427 ORTHO05D005381 3.4e-52 209.1 218 50.0
GSVIVG01025117001 Vitis vinifera HOM05D004427 ORTHO05D005381 3.4e-52 209.1 215 49.8
RcHm_v2.0_Chr5g0061241 Rosa chinensis HOM05D004427 ORTHO05D005381 4.4e-52 208.8 224 51.3
Cfa011378 Carpinus fangiana HOM05D004427 ORTHO05D005381 7.5e-52 208.0 226 48.2
FvH4_3g33710 Fragaria vesca HOM05D004427 ORTHO05D005381 9.8e-52 207.6 218 51.4
PSO210G5092 Papaver somniferum HOM05D004427 ORTHO05D005381 9.8e-52 207.6 224 51.8
Migut.N02630 Erythranthe guttata HOM05D004427 ORTHO05D005381 1.3e-51 207.2 219 48.9
PGR119G1466 Punica granatum HOM05D004427 ORTHO05D005381 1.3e-51 207.2 215 51.2
TWI75G0497 Tripterygium wilfordii HOM05D004427 ORTHO05D005381 1.3e-51 207.2 218 47.7
TAR623G1453 Trochodendron aralioides HOM05D004427 ORTHO05D005381 1.7e-51 206.8 222 49.5
Haze_23944 Corylus avellana HOM05D004427 ORTHO05D005381 2.2e-51 206.5 224 46.9
FAN21G1733 Fragaria x ananassa HOM05D004427 ORTHO05D005381 2.2e-51 206.5 218 51.8
Medtr4g061080 Medicago truncatula HOM05D004427 ORTHO05D005381 2.2e-51 206.5 219 50.2
AUR62025117 Chenopodium quinoa HOM05D004427 ORTHO05D005381 2.9e-51 206.1 216 48.6
MD11G1123000 Malus domestica HOM05D004427 ORTHO05D005381 2.9e-51 206.1 216 50.5
Ca_19237_v3 Cicer arietinum L. HOM05D004427 ORTHO05D005381 3.7e-51 205.7 218 50.9
FAN16G3079 Fragaria x ananassa HOM05D004427 ORTHO05D005381 3.7e-51 205.7 217 50.7
Phvul.011G071700 Phaseolus vulgaris HOM05D004427 ORTHO05D005381 3.7e-51 205.7 218 50.5
Glyma.12G072600 Glycine max HOM05D004427 ORTHO05D005381 4.9e-51 205.3 218 49.5
Lsat_1_v5_gn_6_24041 Lactuca sativa HOM05D004427 ORTHO05D005381 6.4e-51 204.9 221 48.0
ClCG02G020830 Citrullus lanatus HOM05D004427 ORTHO05D005381 8.3e-51 204.5 219 49.3
Mapoly0009s0037 Marchantia polymorpha HOM05D004427 ORTHO05D005381 8.3e-51 204.5 224 45.5
Oeu062268.1 Olea europaea HOM05D004427 ORTHO05D005381 8.3e-51 204.5 216 49.5
EL10Ac9g22377 Beta vulgaris HOM05D004427 ORTHO05D005381 1.1e-50 204.1 221 48.0
FAN11G1819 Fragaria x ananassa HOM05D004427 ORTHO05D005381 1.1e-50 204.1 218 51.4
Lj1C183T3 Lonicera japonica HOM05D004427 ORTHO05D005381 1.4e-50 203.8 215 50.2
Prupe.6G092400 Prunus persica HOM05D004427 ORTHO05D005381 3.2e-50 202.6 216 50.5
Lj3g0007721 Lotus japonicus HOM05D004427 ORTHO05D005381 4.1e-50 202.2 220 48.6
Ah.02g113850 Amaranthus hybridus HOM05D004427 ORTHO05D005381 5.4e-50 201.8 216 48.6
Sed0015128 Sechium edule HOM05D004427 ORTHO05D005381 7.1e-50 201.4 216 48.6
VMungo1127G1062 Vigna mungo HOM05D004427 ORTHO05D005381 9.2e-50 201.1 218 48.6
AagrBONN_evm.TU.Sc2ySwM_344.2535 Anthoceros agrestis HOM05D004427 ORTHO05D005381 1.2e-49 200.7 219 46.6
Lj1C183T1 Lonicera japonica HOM05D004427 ORTHO05D005381 1.2e-49 200.7 215 49.8
BraA03t10444Z Brassica rapa HOM05D004427 ORTHO05D005381 2.1e-49 199.9 221 48.4
MELO3C025732.2 Cucumis melo HOM05D004427 ORTHO05D005381 2.1e-49 199.9 220 46.8
THA.LOC104799482 Tarenaya hassleriana HOM05D004427 ORTHO05D005381 2.7e-49 199.5 220 48.2
MD09G1211300 Malus domestica HOM05D004427 ORTHO05D005381 3.5e-49 199.1 216 49.1
Potri.013G002700 Populus trichocarpa HOM05D004427 ORTHO05D005381 3.5e-49 199.1 242 45.9
arahy.Tifrunner.gnm1.ann1.T6X9B2 Arachis hypogaea HOM05D004427 ORTHO05D005381 4.6e-49 198.7 218 46.8
arahy.Tifrunner.gnm1.ann1.JL7YN4 Arachis hypogaea HOM05D004427 ORTHO05D005381 6.0e-49 198.4 218 46.3
Sabra13G0002300 Salix brachista HOM05D004427 ORTHO05D005381 6.0e-49 198.4 242 45.0
BcaB01g04643 Brassica carinata HOM05D004427 ORTHO05D005381 7.8e-49 198.0 221 48.0
A03p11310 Brassica napus HOM05D004427 ORTHO05D005381 1.3e-48 197.2 221 48.0
CSS0042497 Camellia sinensis var. sinensis HOM05D004427 ORTHO05D005381 1.3e-48 197.2 220 46.4
CsaV3_6G021480 Cucumis sativus L. HOM05D004427 ORTHO05D005381 1.3e-48 197.2 219 46.1
Cc01_g11690 Coffea canephora HOM05D004427 ORTHO05D005381 1.7e-48 196.8 217 50.2
Aa31LG1G12350 Aethionema arabicum HOM05D004427 ORTHO05D005381 2.3e-48 196.4 218 49.1
CAN.G765.37 Capsicum annuum HOM05D004427 ORTHO05D005381 2.3e-48 196.4 218 48.6
CSS0013146 Camellia sinensis var. sinensis HOM05D004427 ORTHO05D005381 3.0e-48 196.1 223 47.1
Sp6g21820 Schrenkiella parvula HOM05D004427 ORTHO05D005381 3.9e-48 195.7 220 47.7
BolC3t13765H Brassica oleracea HOM05D004427 ORTHO05D005381 6.6e-48 194.9 221 47.5
Thhalv10014584m.g Eutrema salsugineum HOM05D004427 ORTHO05D005381 6.6e-48 194.9 220 45.9
Carub.0008s2094 Capsella rubella HOM05D004427 ORTHO05D005381 2.5e-47 193.0 225 46.7
C03p13030 Brassica napus HOM05D004427 ORTHO05D005381 4.3e-47 192.2 221 46.2
CAN.G354.26 Capsicum annuum HOM05D004427 ORTHO05D005381 4.3e-47 192.2 218 48.2
CARHR273870 Cardamine hirsuta HOM05D004427 ORTHO05D005381 7.3e-47 191.4 216 47.2
AL8G36800 Arabidopsis lyrata HOM05D004427 ORTHO05D005381 1.6e-46 190.3 222 45.5
AL817U10010 Arabidopsis lyrata HOM05D004427 ORTHO05D005381 2.8e-46 189.5 220 45.9
BcaB08g36313 Brassica carinata HOM05D004427 ORTHO05D005381 3.6e-46 189.1 222 45.5
QL03p001209 Quercus lobata HOM05D004427 ORTHO05D005381 6.2e-46 188.3 249 41.4
CSS0008575 Camellia sinensis var. sinensis HOM05D004427 ORTHO05D005381 2.3e-45 186.4 178 52.2
Nitab4.5_0000607g0030 Nicotiana tabacum HOM05D004427 ORTHO05D005381 2.3e-45 186.4 205 48.8
AT5G60190 Arabidopsis thaliana HOM05D004427 ORTHO05D005381 3.1e-45 186.0 223 43.9
Nitab4.5_0000100g0070 Nicotiana tabacum HOM05D004427 ORTHO05D005381 6.8e-45 184.9 189 49.7
Peaxi162Scf00155g00071 Petunia axillaris HOM05D004427 ORTHO05D005381 1.2e-44 184.1 177 52.5
EL10Ac8g19614 Beta vulgaris HOM05D004427 ORTHO05D005381 9.9e-44 181.0 258 43.4
BraA10t43818Z Brassica rapa HOM05D004427 ORTHO05D005381 2.9e-43 179.5 222 44.6
unitig_0.g1522 Utricularia gibba HOM05D004427 ORTHO05D005381 6.4e-43 178.3 226 42.5
PSO210G2821 Papaver somniferum HOM05D004427 ORTHO05D005381 8.4e-43 177.9 221 44.8
SHI06027 Sapria himalayana HOM05D004427 ORTHO05D005381 1.4e-42 177.2 214 44.9
A10p17340 Brassica napus HOM05D004427 ORTHO05D005381 2.4e-42 176.4 219 44.3
Pp3c21_14830 Physcomitrium patens HOM05D004427 ORTHO05D005381 1.2e-41 174.1 230 43.5
Ah.02g123640 Amaranthus hybridus HOM05D004427 ORTHO05D005381 3.5e-41 172.6 227 44.5
SGA_v2.0_scaffold80G25743 Striga asiatica HOM05D004427 ORTHO05D005381 7.8e-41 171.4 227 41.4
Os12g0102350 Oryza sativa ssp. japonica HOM05D004427 ORTHO05D005381 1.0e-40 171.0 221 43.0
Os11g0102700 Oryza sativa ssp. japonica HOM05D004427 ORTHO05D005381 2.3e-40 169.9 222 42.3
EL10Ac9g22643 Beta vulgaris HOM05D004427 ORTHO05D005381 3.9e-40 169.1 258 38.8
AUR62003115 Chenopodium quinoa HOM05D004427 ORTHO05D005381 5.1e-40 168.7 226 45.6
Hund22380 Selenicereus undatus HOM05D004427 ORTHO05D005381 1.5e-39 167.2 239 40.6
QL01p000714 Quercus lobata HOM05D004427 ORTHO05D005381 7.3e-39 164.9 237 40.5
TAR629G2862 Trochodendron aralioides HOM05D004427 ORTHO05D005381 1.6e-38 163.7 246 40.2
Ah.03g139880 Amaranthus hybridus HOM05D004427 ORTHO05D005381 2.1e-38 163.3 262 38.9
Zm00001eb413910 Zea mays HOM05D004427 ORTHO05D005381 2.8e-38 162.9 227 39.2
CSS0048170 Camellia sinensis var. sinensis HOM05D004427 ORTHO05D005381 6.2e-38 161.8 218 42.7
TAR376G0174 Trochodendron aralioides HOM05D004427 ORTHO05D005381 8.1e-38 161.4 250 38.4
TAR371G1244 Trochodendron aralioides HOM05D004427 ORTHO05D005381 4.0e-37 159.1 251 39.0
Ah.02g123630 Amaranthus hybridus HOM05D004427 ORTHO05D005381 5.2e-37 158.7 262 38.5
DCAR_002673 Daucus carota HOM05D004427 ORTHO05D005381 6.9e-37 158.3 256 37.5
vmacro14781 Vaccinium macrocarpon HOM05D004427 ORTHO05D005381 8.9e-37 157.9 223 38.6
Sc06g0007950 Simmondsia chinensis HOM05D004427 ORTHO05D005381 1.2e-36 157.5 140 54.3
DCAR_012615 Daucus carota HOM05D004427 ORTHO05D005381 5.8e-36 155.2 254 38.6
EL10Ac5g12984 Beta vulgaris HOM05D004427 ORTHO05D005381 2.4e-34 149.8 236 41.1
SMO367G1171 Selaginella moellendorffii HOM05D002435 ORTHO05D002550 6.0e-33 145.2 176 42.6
RcHm_v2.0_Chr4g0447061 Rosa chinensis HOM05D004427 ORTHO05D005381 1.3e-32 144.1 149 50.3
MCO07G761 Micromonas commoda HOM05D004427 ORTHO05D005381 3.0e-32 142.9 225 36.9
TAR371G1167 Trochodendron aralioides HOM05D004427 ORTHO05D005381 1.1e-31 141.0 228 38.6
BcaC04g19664 Brassica carinata HOM05D004427 ORTHO05D005381 9.6e-31 137.9 219 39.3
Cre01.g055050 Chlamydomonas reinhardtii HOM05D004427 ORTHO05D005381 2.1e-30 136.7 204 39.7
CDE04G2448 Ceratophyllum demersum HOM05D004427 ORTHO05D005381 2.8e-30 136.3 146 44.5
AUR62032911 Chenopodium quinoa HOM05D004427 ORTHO05D005381 6.2e-30 135.2 264 34.5
FvH4_4g37251 Fragaria vesca HOM05D004427 ORTHO05D005381 8.1e-30 134.8 142 46.5
MD00G1127100 Malus domestica HOM05D004427 ORTHO05D005381 1.8e-29 133.7 164 43.3
CBR_g4323 Chara braunii HOM05D004427 ORTHO05D005381 2.6e-28 129.8 182 37.4
Prupe.1G350400 Prunus persica HOM05D004427 ORTHO05D005381 7.6e-28 128.3 155 44.5
Solyc05g005310.3 Solanum lycopersicum HOM05D004427 ORTHO05D005381 1.3e-27 127.5 147 46.9
FAN02G3329 Fragaria x ananassa HOM05D004427 ORTHO05D005381 4.9e-27 125.6 143 45.5
FAN05G2706 Fragaria x ananassa HOM05D004427 ORTHO05D005381 1.4e-26 124.0 143 44.8
Lj3A845T93 Lonicera japonica HOM05D004427 ORTHO05D005381 2.4e-26 123.2 214 36.4
CSS0032605 Camellia sinensis var. sinensis HOM05D004427 ORTHO05D005381 5.4e-26 122.1 214 37.9
FvH4_6g48790 Fragaria vesca HOM05D004427 ORTHO05D005381 1.6e-25 120.6 146 43.2
FAN17G0248 Fragaria x ananassa HOM05D004427 ORTHO05D025555 3.5e-25 119.4 147 41.5
FAN12G0369 Fragaria x ananassa HOM05D028185 ORTHO05D025555 1.0e-24 117.9 147 40.8
C09p52680 Brassica napus HOM05D004427 ORTHO05D005381 1.8e-24 117.1 173 39.3
BolC9t58136H Brassica oleracea HOM05D004427 ORTHO05D005381 1.8e-24 117.1 173 39.3
RcHm_v2.0_Chr4g0387651 Rosa chinensis HOM05D028185 ORTHO05D025555 1.8e-24 117.1 154 39.6
DCAR_026152 Daucus carota HOM05D004427 ORTHO05D005381 2.3e-24 116.7 185 38.4
Actinidia09505 Actinidia chinensis HOM05D004427 ORTHO05D005381 1.9e-23 113.6 141 46.1
Os12g0127600 Oryza sativa ssp. japonica HOM05D004427 ORTHO05D005381 6.2e-22 108.6 215 31.2
CSS0019084 Camellia sinensis var. sinensis HOM05D004427 ORTHO05D005381 5.8e-20 102.1 82 62.2
CSS0026652 Camellia sinensis var. sinensis HOM05D004427 ORTHO05D005381 6.4e-19 98.6 82 61.0
FAN17G0618 Fragaria x ananassa HOM05D000639 ORTHO05D006731 3.2e-18 96.3 114 41.2
Os12g0103580 Oryza sativa ssp. japonica HOM05D004427 ORTHO05D005381 5.5e-18 95.5 229 31.4
Manes.11G140201 Manihot esculenta HOM05D004427 ORTHO05D005381 9.6e-15 84.7 126 39.7
CAN.G682.5 Capsicum annuum HOM05D004427 ORTHO05D005381 1.3e-14 84.3 114 43.9
Lj1C183G2 Lonicera japonica HOM05D004427 ORTHO05D005381 1.4e-13 80.9 98 44.9
AUR62015500 Chenopodium quinoa HOM05D004427 ORTHO05D005381 1.8e-13 80.5 150 33.3
FAN07G0825 Fragaria x ananassa HOM05D000639 ORTHO05D006731 9.0e-13 78.2 189 28.6
AUR62002202 Chenopodium quinoa HOM05D004427 ORTHO05D005381 2.0e-12 77.0 82 46.3
PRCOL_00006943 Prasinoderma coloniale HOM05D004007 ORTHO05D005127 2.0e-12 77.0 244 28.3
AUR62008635 Chenopodium quinoa HOM05D004427 ORTHO05D005381 7.6e-12 75.1 94 43.6
FAN09G1397 Fragaria x ananassa HOM05D004427 ORTHO05D005381 9.3e-10 68.2 83 45.8
AUR62037167 Chenopodium quinoa HOM05D004427 ORTHO05D005381 6.0e-09 65.5 66 51.5
Cfa026731 Carpinus fangiana HOM05D004427 ORTHO05D005381 5.7e-07 58.9 158 29.1
Rhsim01G0258900 Rhododendron simsii HOM05D004427 ORTHO05D005381 2.1e-06 57.0 82 37.8
CBR_g8024 Chara braunii HOM05D001559 ORTHO05D002307 8.2e-06 55.1 104 29.8


User provided reference genes

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