Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SEGI_38853 Sequoiadendron giganteum HOM05D002920 ORTHO05D003118 4.4e-46 187.6 92 100.0
MBI16_g06013_MAGBIO Magnolia biondii HOM05D002920 ORTHO05D003118 1.4e-28 129.4 72 81.9
Nn1g05621 Nelumbo nucifera HOM05D002920 ORTHO05D003118 3.1e-28 128.3 72 80.6
Aqoxy5G01357 Aquilegia oxysepala HOM05D002920 ORTHO05D003118 7.0e-28 127.1 73 79.5
Prupe.1G535700 Prunus persica HOM05D002920 ORTHO05D003118 2.7e-27 125.2 72 79.2
TAR381G0245 Trochodendron aralioides HOM05D002920 ORTHO05D003118 3.5e-27 124.8 72 79.2
TAR625G0757 Trochodendron aralioides HOM05D002920 ORTHO05D003118 7.7e-27 123.6 72 77.8
ATR0767G155 Amborella trichopoda HOM05D002920 ORTHO05D003118 1.7e-26 122.5 68 79.4
CiPaw.07G163600 Carya illinoinensis HOM05D002920 ORTHO05D003118 1.7e-26 122.5 73 75.3
TWI12G0386 Tripterygium wilfordii HOM05D002920 ORTHO05D003118 1.7e-26 122.5 72 75.0
Thecc.08G073100 Theobroma cacao HOM05D002920 ORTHO05D003118 2.2e-26 122.1 72 77.8
Cc10_g08510 Coffea canephora HOM05D002920 ORTHO05D003118 2.9e-26 121.7 72 77.8
Nitab4.5_0000131g0060 Nicotiana tabacum HOM05D002920 ORTHO05D003118 2.9e-26 121.7 72 77.8
Lj4C86G6 Lonicera japonica HOM05D002920 ORTHO05D003118 6.5e-26 120.6 72 73.6
FvH4_5g34390 Fragaria vesca HOM05D002920 ORTHO05D003118 8.5e-26 120.2 72 75.0
FAN04G1888 Fragaria x ananassa HOM05D002920 ORTHO05D003118 8.5e-26 120.2 72 75.0
FAN18G2688 Fragaria x ananassa HOM05D002920 ORTHO05D003118 8.5e-26 120.2 72 75.0
Lsat_1_v5_gn_1_1961 Lactuca sativa HOM05D002920 ORTHO05D003118 8.5e-26 120.2 80 66.2
RcHm_v2.0_Chr7g0235041 Rosa chinensis HOM05D002920 ORTHO05D003118 8.5e-26 120.2 72 75.0
ECA247G2620 Erigeron canadensis HOM05D002920 ORTHO05D003118 1.5e-25 119.4 72 75.0
Lj1g0004035 Lotus japonicus HOM05D002920 ORTHO05D003118 1.5e-25 119.4 72 75.0
Lalb_Chr08g0242591 Lupinus albus HOM05D002920 ORTHO05D003118 1.5e-25 119.4 72 76.4
Sc26g0003000 Simmondsia chinensis HOM05D002920 ORTHO05D003118 1.5e-25 119.4 72 76.4
Dinv44873 Davidia involucrata HOM05D002920 ORTHO05D003118 2.5e-25 118.6 72 75.0
HanXRQChr02g0046051 Helianthus annuus HOM05D002920 ORTHO05D003118 2.5e-25 118.6 68 77.9
arahy.Tifrunner.gnm1.ann1.3DHU48 Arachis hypogaea HOM05D002920 ORTHO05D003118 3.2e-25 118.2 72 75.0
Glyma.06G098300 Glycine max HOM05D002920 ORTHO05D003118 3.2e-25 118.2 72 72.2
BcaC04g22122 Brassica carinata HOM05D002920 ORTHO05D003118 4.2e-25 117.9 72 73.6
C09p23100 Brassica napus HOM05D002920 ORTHO05D003118 4.2e-25 117.9 72 73.6
BolC9t55228H Brassica oleracea HOM05D002920 ORTHO05D003118 4.2e-25 117.9 72 73.6
BraA09t37476Z Brassica rapa HOM05D002920 ORTHO05D003118 4.2e-25 117.9 72 73.6
Glyma.04G096600 Glycine max HOM05D002920 ORTHO05D003118 4.2e-25 117.9 72 72.2
Phvul.009G035200 Phaseolus vulgaris HOM05D002920 ORTHO05D003118 4.2e-25 117.9 72 72.2
VMungo1309G0011 Vigna mungo HOM05D002920 ORTHO05D003118 4.2e-25 117.9 72 72.2
arahy.Tifrunner.gnm1.ann1.WZJ2AS Arachis hypogaea HOM05D002920 ORTHO05D003118 5.5e-25 117.5 71 76.1
CARHR053650 Cardamine hirsuta HOM05D002920 ORTHO05D003118 5.5e-25 117.5 72 72.2
PSO170G4177 Papaver somniferum HOM05D002920 ORTHO05D003118 5.5e-25 117.5 72 72.2
PSO210G5781 Papaver somniferum HOM05D002920 ORTHO05D003118 5.5e-25 117.5 72 72.2
Ca_16019_v3 Cicer arietinum L. HOM05D002920 ORTHO05D003118 7.2e-25 117.1 72 73.6
Thhalv10023209m.g Eutrema salsugineum HOM05D002920 ORTHO05D003118 7.2e-25 117.1 72 73.6
FAN13G0555 Fragaria x ananassa HOM05D002920 ORTHO05D003118 7.2e-25 117.1 72 73.6
Peaxi162Scf01112g00017 Petunia axillaris HOM05D002920 ORTHO05D003118 7.2e-25 117.1 72 73.6
PGR042G2097 Punica granatum HOM05D002920 ORTHO05D003118 7.2e-25 117.1 72 75.0
SGA_v2.0_scaffold235G43665 Striga asiatica HOM05D002920 ORTHO05D003118 7.2e-25 117.1 72 75.0
MSTRG.24431 Avicennia marina HOM05D002920 ORTHO05D003118 9.4e-25 116.7 72 73.6
CAN.G193.3 Capsicum annuum HOM05D002920 ORTHO05D003118 9.4e-25 116.7 72 75.0
MD15G1388100 Malus domestica HOM05D002920 ORTHO05D003118 9.4e-25 116.7 72 73.6
Nn7g36727 Nelumbo nucifera HOM05D002920 ORTHO05D003118 9.4e-25 116.7 68 77.9
Psat5g047200 Pisum sativum HOM05D002920 ORTHO05D003118 9.4e-25 116.7 72 73.6
Solyc04g076540.4 Solanum lycopersicum HOM05D002920 ORTHO05D003118 9.4e-25 116.7 72 75.0
Sopen04g030270 Solanum pennellii HOM05D002920 ORTHO05D003118 9.4e-25 116.7 72 75.0
Eucgr.F00435 Eucalyptus grandis HOM05D002920 ORTHO05D003118 1.2e-24 116.3 72 73.6
Ciclev10000004m.g Citrus clementina HOM05D002920 ORTHO05D003118 1.6e-24 115.9 68 77.9
MD08G1201800 Malus domestica HOM05D002920 ORTHO05D003118 1.6e-24 115.9 72 73.6
GSVIVG01009199001 Vitis vinifera HOM05D002920 ORTHO05D003118 1.6e-24 115.9 68 75.0
Atru.chr13.989 Acer truncatum HOM05D002920 ORTHO05D003118 2.1e-24 115.5 72 72.2
Ah.05g171450 Amaranthus hybridus HOM05D002920 ORTHO05D003118 2.7e-24 115.2 72 75.0
Cfa013811 Carpinus fangiana HOM05D002920 ORTHO05D003118 2.7e-24 115.2 72 72.2
AUR62014366 Chenopodium quinoa HOM05D002920 ORTHO05D003118 2.7e-24 115.2 72 75.0
MELO3C011076.2 Cucumis melo HOM05D002920 ORTHO05D003118 2.7e-24 115.2 68 75.0
CsaV3_2G030160 Cucumis sativus L. HOM05D002920 ORTHO05D003118 2.7e-24 115.2 68 75.0
Manes.18G056500 Manihot esculenta HOM05D002920 ORTHO05D003118 2.7e-24 115.2 72 73.6
AL2G18260 Arabidopsis lyrata HOM05D002920 ORTHO05D003118 3.6e-24 114.8 72 72.2
Carub.0002s0632 Capsella rubella HOM05D002920 ORTHO05D003118 3.6e-24 114.8 72 72.2
ClCG08G011580 Citrullus lanatus HOM05D002920 ORTHO05D003118 3.6e-24 114.8 75 68.0
SalBow2G2368 Salvia bowleyana HOM05D002920 ORTHO05D003118 3.6e-24 114.8 72 72.2
DCAR_032088 Daucus carota HOM05D002920 ORTHO05D003118 4.7e-24 114.4 71 71.8
Hund26821 Selenicereus undatus HOM05D002920 ORTHO05D003118 4.7e-24 114.4 72 73.6
TPR.G6371 Trifolium pratense HOM05D002920 ORTHO05D003118 4.7e-24 114.4 72 72.2
BcaC09g49498 Brassica carinata HOM05D002920 ORTHO05D003118 6.1e-24 114.0 67 76.1
A01p28350 Brassica napus HOM05D002920 ORTHO05D003118 6.1e-24 114.0 67 76.1
C01p35900 Brassica napus HOM05D002920 ORTHO05D003118 6.1e-24 114.0 67 76.1
BolC1t03549H Brassica oleracea HOM05D002920 ORTHO05D003118 6.1e-24 114.0 67 76.1
BraA01t02963Z Brassica rapa HOM05D002920 ORTHO05D003118 6.1e-24 114.0 67 76.1
Gohir.A05G218800 Gossypium hirsutum HOM05D002920 ORTHO05D003118 6.1e-24 114.0 72 72.2
Sp2g05360 Schrenkiella parvula HOM05D002920 ORTHO05D003118 6.1e-24 114.0 72 72.2
Gohir.A05G264400 Gossypium hirsutum HOM05D002920 ORTHO05D003118 8.0e-24 113.6 72 70.8
Gohir.D05G266900 Gossypium hirsutum HOM05D002920 ORTHO05D003118 8.0e-24 113.6 72 70.8
Gorai.009G279000 Gossypium raimondii HOM05D002920 ORTHO05D003118 8.0e-24 113.6 72 70.8
LjContig00408g0017356 Lotus japonicus HOM05D002920 ORTHO05D003118 8.0e-24 113.6 72 68.1
Sed0007128 Sechium edule HOM05D002920 ORTHO05D003118 8.0e-24 113.6 68 75.0
TWI56G0278 Tripterygium wilfordii HOM05D002920 ORTHO05D003118 8.0e-24 113.6 72 70.8
BcaB04g20194 Brassica carinata HOM05D002920 ORTHO05D003118 1.0e-23 113.2 67 73.1
CDE07G0298 Ceratophyllum demersum HOM05D002920 ORTHO05D003118 1.0e-23 113.2 68 72.1
CARHR053740 Cardamine hirsuta HOM05D002920 ORTHO05D003118 1.4e-23 112.8 72 70.8
Duzib116G0095 Durio zibethinus HOM05D002920 ORTHO05D003118 1.4e-23 112.8 72 70.8
Migut.N02861 Erythranthe guttata HOM05D002920 ORTHO05D003118 1.4e-23 112.8 72 70.8
AT1G58250 Arabidopsis thaliana HOM05D002920 ORTHO05D003118 1.8e-23 112.5 72 70.8
COL.COLO4_35270 Corchorus olitorius HOM05D002920 ORTHO05D003118 1.8e-23 112.5 72 72.2
Duzib041G0528 Durio zibethinus HOM05D002920 ORTHO05D003118 1.8e-23 112.5 72 72.2
Medtr3g099880 Medicago truncatula HOM05D002920 ORTHO05D003118 1.8e-23 112.5 68 76.5
Sabra02G0087200 Salix brachista HOM05D002920 ORTHO05D003118 1.8e-23 112.5 74 68.9
THA.LOC104823692 Tarenaya hassleriana HOM05D002920 ORTHO05D003118 1.8e-23 112.5 72 70.8
Lalb_Chr10g0102771 Lupinus albus HOM05D002920 ORTHO05D003118 2.3e-23 112.1 72 68.1
Manes.05G189400 Manihot esculenta HOM05D002920 ORTHO05D003118 2.3e-23 112.1 72 72.2
TPR.G26343 Trifolium pratense HOM05D002920 ORTHO05D003118 2.3e-23 112.1 72 66.7
EL10Ac1g00492 Beta vulgaris HOM05D002920 ORTHO05D003118 3.0e-23 111.7 72 73.6
Peaxi162Scf00160g01034 Petunia axillaris HOM05D002920 ORTHO05D003118 3.0e-23 111.7 72 68.1
Nitab4.5_0000354g0140 Nicotiana tabacum HOM05D002920 ORTHO05D003118 4.0e-23 111.3 72 68.1
Nitab4.5_0005065g0010 Nicotiana tabacum HOM05D002920 ORTHO05D003118 4.0e-23 111.3 72 68.1
Potri.002G110700 Populus trichocarpa HOM05D002920 ORTHO05D003118 4.0e-23 111.3 72 70.8
THA.LOC104817630 Tarenaya hassleriana HOM05D002920 ORTHO05D003118 4.0e-23 111.3 72 69.4
CANSAT11G0038 Cannabis sativa HOM05D002920 ORTHO05D003118 6.8e-23 110.5 72 72.2
MD08G1208300 Malus domestica HOM05D002920 ORTHO05D003118 8.8e-23 110.2 71 74.6
Mapoly0099s0021 Marchantia polymorpha HOM05D002920 ORTHO05D003118 8.8e-23 110.2 72 70.8
Sp1g33860 Schrenkiella parvula HOM05D002920 ORTHO05D003118 8.8e-23 110.2 72 70.8
Aa31LG2G10870 Aethionema arabicum HOM05D002920 ORTHO05D003118 1.2e-22 109.8 72 69.4
CSS0008058 Camellia sinensis var. sinensis HOM05D002920 ORTHO05D003118 1.2e-22 109.8 72 68.1
CAN.G1104.5 Capsicum annuum HOM05D002920 ORTHO05D003118 1.2e-22 109.8 72 68.1
Psat2g064120 Pisum sativum HOM05D002920 ORTHO05D003118 1.2e-22 109.8 72 66.7
arahy.Tifrunner.gnm1.ann1.GN9VME Arachis hypogaea HOM05D002920 ORTHO05D003118 1.5e-22 109.4 72 65.3
arahy.Tifrunner.gnm1.ann1.LW385E Arachis hypogaea HOM05D002920 ORTHO05D003118 1.5e-22 109.4 72 65.3
CSS0043684 Camellia sinensis var. sinensis HOM05D002920 ORTHO05D003118 1.5e-22 109.4 72 68.1
Lsat_1_v5_gn_7_70960 Lactuca sativa HOM05D002920 ORTHO05D003118 3.4e-22 108.2 75 62.7
Phvul.008G183000 Phaseolus vulgaris HOM05D002920 ORTHO05D003118 4.4e-22 107.8 72 62.5
Pp3c12_12980 Physcomitrium patens HOM05D002920 ORTHO05D003118 4.4e-22 107.8 71 70.4
CARHR259160 Cardamine hirsuta HOM05D002920 ORTHO05D003118 5.7e-22 107.5 72 63.9
Gohir.D05G221500 Gossypium hirsutum HOM05D002920 ORTHO05D003118 5.7e-22 107.5 72 68.1
Gorai.009G228700 Gossypium raimondii HOM05D002920 ORTHO05D003118 5.7e-22 107.5 72 68.1
PGSC0003DMG400002051 Solanum tuberosum HOM05D002920 ORTHO05D003118 7.5e-22 107.1 72 63.9
TPR.G30876 Trifolium pratense HOM05D002920 ORTHO05D003118 7.5e-22 107.1 72 65.3
AL8G23560 Arabidopsis lyrata HOM05D002920 ORTHO05D003118 1.3e-21 106.3 72 63.9
AT5G49680 Arabidopsis thaliana HOM05D002920 ORTHO05D003118 1.3e-21 106.3 72 63.9
A08p06260 Brassica napus HOM05D002920 ORTHO05D003118 1.3e-21 106.3 72 68.1
BraA08t32630Z Brassica rapa HOM05D002920 ORTHO05D003118 1.3e-21 106.3 72 68.1
Carub.0008s0955 Capsella rubella HOM05D002920 ORTHO05D003118 1.3e-21 106.3 72 63.9
Sp4g01560 Schrenkiella parvula HOM05D002920 ORTHO05D003118 1.7e-21 105.9 72 63.9
Glyma.02G215800 Glycine max HOM05D002920 ORTHO05D003118 2.2e-21 105.5 72 62.5
Solyc12g088010.2 Solanum lycopersicum HOM05D002920 ORTHO05D003118 2.2e-21 105.5 72 63.9
Sopen12g030040 Solanum pennellii HOM05D002920 ORTHO05D003118 2.2e-21 105.5 72 63.9
Actinidia19621 Actinidia chinensis HOM05D002920 ORTHO05D003118 2.8e-21 105.1 68 70.6
VMungo0647G0360 Vigna mungo HOM05D002920 ORTHO05D003118 3.7e-21 104.8 72 59.7
Sed0001865 Sechium edule HOM05D002920 ORTHO05D003118 4.8e-21 104.4 72 65.3
HanXRQChr14g0447811 Helianthus annuus HOM05D002920 ORTHO05D003118 6.3e-21 104.0 78 59.0
ECA232G1296 Erigeron canadensis HOM05D002920 ORTHO05D003118 8.3e-21 103.6 71 63.4
SMO116G0207 Selaginella moellendorffii HOM05D002920 ORTHO05D003118 8.3e-21 103.6 72 69.4
Zm00001eb051870 Zea mays HOM05D002920 ORTHO05D003118 8.3e-21 103.6 72 66.7
Medtr5g066650 Medicago truncatula HOM05D002920 ORTHO05D003118 1.1e-20 103.2 72 62.5
Thhalv10000004m.g Eutrema salsugineum HOM05D002920 ORTHO05D003118 1.4e-20 102.8 72 62.5
Lsat_1_v5_gn_9_80681 Lactuca sativa HOM05D002920 ORTHO05D003118 1.8e-20 102.4 71 63.4
AagrBONN_evm.TU.Sc2ySwM_344.1562 Anthoceros agrestis HOM05D002920 ORTHO05D003118 5.4e-20 100.9 76 63.2
A04p17040 Brassica napus HOM05D002920 ORTHO05D003118 5.4e-20 100.9 72 61.1
C04p51730 Brassica napus HOM05D002920 ORTHO05D003118 5.4e-20 100.9 72 61.1
BraA04t17332Z Brassica rapa HOM05D002920 ORTHO05D003118 9.1e-20 100.1 71 62.0
BolC4t26752H Brassica oleracea HOM05D002920 ORTHO05D003118 1.6e-19 99.4 71 62.0
Rhsim07G0212900 Rhododendron simsii HOM05D002920 ORTHO05D003118 1.6e-19 99.4 97 52.6
Hund17269 Selenicereus undatus HOM05D002920 ORTHO05D003118 2.0e-19 99.0 74 58.1
Rhsim06G0070200 Rhododendron simsii HOM05D002920 ORTHO05D003118 3.5e-19 98.2 68 63.2
unitig_578.g16182 Utricularia gibba HOM05D002920 ORTHO05D003118 7.7e-19 97.1 70 62.9
HPP92_018503 Vanilla planifolia HOM05D002920 ORTHO05D003118 1.3e-18 96.3 68 64.7
Zm00001eb394580 Zea mays HOM05D002920 ORTHO05D003118 1.5e-17 92.8 70 60.0
BcaC07g37279 Brassica carinata HOM05D002920 ORTHO05D003118 3.0e-15 85.1 59 67.8
C08p07060 Brassica napus HOM05D002920 ORTHO05D003118 3.0e-15 85.1 59 67.8
BolC8t47550H Brassica oleracea HOM05D002920 ORTHO05D003118 3.0e-15 85.1 59 67.8
Psat7g143040 Pisum sativum HOM05D002920 ORTHO05D003118 4.0e-15 84.7 60 68.3
vmacro04641 Vaccinium macrocarpon HOM05D002920 ORTHO05D003118 1.3e-13 79.7 144 34.7
Nitab4.5_0005345g0040 Nicotiana tabacum HOM05D002920 ORTHO05D003118 2.2e-13 79.0 47 74.5
Aa31LG4G11400 Aethionema arabicum HOM05D002920 ORTHO05D003118 1.1e-12 76.6 54 61.1
Oeu038175.1 Olea europaea HOM05D002920 ORTHO05D010194 1.8e-12 75.9 78 48.7
CAN.G375.37 Capsicum annuum HOM05D002920 ORTHO05D003118 7.0e-12 73.9 47 70.2
CANSAT80G1718 Cannabis sativa HOM05D002920 ORTHO05D003118 9.2e-12 73.6 47 70.2
QL09p018218 Quercus lobata HOM05D002920 ORTHO05D003118 9.2e-12 73.6 46 71.7
Ca_05459_v3 Cicer arietinum L. HOM05D002920 ORTHO05D003118 7.8e-11 70.5 47 63.8
CBR_g40341 Chara braunii HOM05D002920 ORTHO05D003118 6.8e-07 57.4 70 42.9


User provided reference genes

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