Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SEGI_38311 Sequoiadendron giganteum HOM05D004501 ORTHO05D004944 0.0e+00 2115.5 1065 100.0
Mapoly0088s0017 Marchantia polymorpha HOM05D004501 ORTHO05D004944 2.2e-226 790.0 781 52.8
ATR1145G029 Amborella trichopoda HOM05D004501 ORTHO05D004944 5.9e-211 738.8 1062 43.4
Haze_07939 Corylus avellana HOM05D004501 ORTHO05D004944 2.5e-206 723.4 713 54.6
Cfa012694 Carpinus fangiana HOM05D004501 ORTHO05D004944 3.7e-205 719.5 672 56.5
Lj2C224T11 Lonicera japonica HOM05D004501 ORTHO05D004944 4.1e-204 716.1 680 55.3
QL12p011237 Quercus lobata HOM05D004501 ORTHO05D004944 1.2e-203 714.5 671 55.7
Eucgr.E00402 Eucalyptus grandis HOM05D004501 ORTHO05D004944 2.0e-203 713.8 679 55.4
MD04G1060900 Malus domestica HOM05D004501 ORTHO05D004944 2.0e-203 713.8 706 53.4
CiPaw.11G082400 Carya illinoinensis HOM05D004501 ORTHO05D004944 7.7e-203 711.8 677 55.2
PSO675G3024 Papaver somniferum HOM05D004501 ORTHO05D004944 1.7e-202 710.7 689 53.6
FAN08G1352 Fragaria x ananassa HOM05D004501 ORTHO05D004944 2.5e-201 706.8 722 52.4
PSO732G0005 Papaver somniferum HOM05D004501 ORTHO05D004944 2.5e-201 706.8 700 52.3
vmacro14139 Vaccinium macrocarpon HOM05D004501 ORTHO05D004944 2.7e-200 703.4 779 49.3
Nn1g00910 Nelumbo nucifera HOM05D004501 ORTHO05D004944 3.6e-200 703.0 696 52.3
Potri.001G155200 Populus trichocarpa HOM05D004501 ORTHO05D004944 2.3e-199 700.3 671 53.9
FvH4_5g19540 Fragaria vesca HOM05D004501 ORTHO05D004944 3.0e-199 699.9 722 52.2
Aqoxy7G03746 Aquilegia oxysepala HOM05D004501 ORTHO05D004944 1.1e-198 698.0 669 53.1
PGSC0003DMG400026239 Solanum tuberosum HOM05D004501 ORTHO05D004944 1.1e-198 698.0 723 51.2
CANSAT21G1630 Cannabis sativa HOM05D004501 ORTHO05D004944 3.3e-198 696.4 781 48.9
FAN13G2915 Fragaria x ananassa HOM05D004501 ORTHO05D004944 3.3e-198 696.4 729 51.9
RcHm_v2.0_Chr7g0204151 Rosa chinensis HOM05D004501 ORTHO05D004944 4.4e-198 696.0 775 49.9
CAN.G1178.8 Capsicum annuum HOM05D004501 ORTHO05D004944 9.7e-198 694.9 673 53.2
Sopen08g026820 Solanum pennellii HOM05D004501 ORTHO05D004944 1.7e-197 694.1 675 52.9
Solyc08g078320.3 Solanum lycopersicum HOM05D004501 ORTHO05D004944 1.8e-196 690.6 675 52.7
Ciclev10018712m.g Citrus clementina HOM05D004501 ORTHO05D004944 3.1e-196 689.9 772 50.1
Migut.A01144 Erythranthe guttata HOM05D004501 ORTHO05D004944 3.1e-196 689.9 679 53.9
MSTRG.12127 Avicennia marina HOM05D004501 ORTHO05D004944 3.5e-195 686.4 697 53.1
COL.COLO4_37109 Corchorus olitorius HOM05D004501 ORTHO05D004944 4.5e-195 686.0 724 52.2
Cc08_g12070 Coffea canephora HOM05D004501 ORTHO05D004944 1.0e-194 684.9 681 53.3
Atru.chr9.1263 Acer truncatum HOM05D004501 ORTHO05D004944 2.2e-194 683.7 716 51.1
TWI15G0617 Tripterygium wilfordii HOM05D004501 ORTHO05D004944 1.1e-193 681.4 716 51.3
Psat2g176440 Pisum sativum HOM05D004501 ORTHO05D004944 2.5e-193 680.2 717 51.2
Thecc.03G247200 Theobroma cacao HOM05D004501 ORTHO05D004944 4.2e-193 679.5 686 53.6
PGR042G0255 Punica granatum HOM05D004501 ORTHO05D004944 4.7e-192 676.0 716 50.7
Lj2g0006235 Lotus japonicus HOM05D004501 ORTHO05D004944 1.4e-191 674.5 715 50.1
Medtr5g012940 Medicago truncatula HOM05D004501 ORTHO05D004944 3.0e-191 673.3 677 52.3
THA.LOC104810067 Tarenaya hassleriana HOM05D004501 ORTHO05D004944 3.0e-191 673.3 910 44.5
Glyma.01G207400 Glycine max HOM05D004501 ORTHO05D004944 4.0e-191 672.9 914 44.4
Ca_24594_v3 Cicer arietinum L. HOM05D004501 ORTHO05D004944 5.2e-191 672.5 766 48.3
CARHR134700 Cardamine hirsuta HOM05D004501 ORTHO05D004944 8.8e-191 671.8 772 47.0
Sc01g0008260 Simmondsia chinensis HOM05D004501 ORTHO05D004944 1.1e-190 671.4 671 51.9
Hund14524 Selenicereus undatus HOM05D004501 ORTHO05D004944 5.7e-190 669.1 673 52.0
SalBow6G6502 Salvia bowleyana HOM05D004501 ORTHO05D004944 2.2e-189 667.2 688 51.9
EL10Ac5g12334 Beta vulgaris HOM05D004501 ORTHO05D004944 1.1e-188 664.8 722 49.3
Sed0022861 Sechium edule HOM05D004501 ORTHO05D004944 2.4e-188 663.7 698 51.0
AL4G37360 Arabidopsis lyrata HOM05D004501 ORTHO05D004944 4.1e-188 662.9 673 51.3
AT2G39810 Arabidopsis thaliana HOM05D004501 ORTHO05D004944 7.0e-188 662.1 673 51.4
Sabra01G0124800 Salix brachista HOM05D004501 ORTHO05D004944 7.0e-188 662.1 699 50.9
Lalb_Chr09g0324311 Lupinus albus HOM05D004501 ORTHO05D004944 1.2e-187 661.4 673 51.9
Manes.01G084200 Manihot esculenta HOM05D004501 ORTHO05D004944 1.2e-187 661.4 816 46.1
Dinv21665 Davidia involucrata HOM05D004501 ORTHO05D004944 2.0e-187 660.6 819 46.6
Sp4g22100 Schrenkiella parvula HOM05D004501 ORTHO05D004944 2.0e-187 660.6 709 48.5
CsaV3_5G004460 Cucumis sativus L. HOM05D004501 ORTHO05D004944 2.7e-187 660.2 714 51.1
Glyma.11G035800 Glycine max HOM05D004501 ORTHO05D004944 2.7e-187 660.2 673 51.4
Carub.0004s2192 Capsella rubella HOM05D004501 ORTHO05D004944 4.5e-187 659.4 701 50.2
VMungo1215G1578 Vigna mungo HOM05D004501 ORTHO05D004944 5.9e-187 659.1 671 51.3
Gorai.008G233400 Gossypium raimondii HOM05D004501 ORTHO05D004944 7.7e-187 658.7 813 47.2
Phvul.002G056400 Phaseolus vulgaris HOM05D004501 ORTHO05D004944 7.7e-187 658.7 671 50.8
HanXRQChr13g0417701 Helianthus annuus HOM05D004501 ORTHO05D004944 1.0e-186 658.3 674 51.9
Potri.003G079700 Populus trichocarpa HOM05D004501 ORTHO05D004944 2.2e-186 657.1 672 51.8
Ah.12g054390 Amaranthus hybridus HOM05D004501 ORTHO05D004944 1.1e-185 654.8 679 50.4
Thhalv10016197m.g Eutrema salsugineum HOM05D004501 ORTHO05D004944 1.1e-185 654.8 673 50.7
Lalb_Chr16g0379471 Lupinus albus HOM05D004501 ORTHO05D004944 2.5e-185 653.7 673 51.1
ECA240G3755 Erigeron canadensis HOM05D004501 ORTHO05D004944 3.2e-185 653.3 673 51.1
Gohir.A12G215200 Gossypium hirsutum HOM05D004501 ORTHO05D004944 4.2e-185 652.9 811 46.2
Prupe.5G064600 Prunus persica HOM05D004501 ORTHO05D004944 4.2e-185 652.9 683 51.8
Sabra03G0049600 Salix brachista HOM05D004501 ORTHO05D004944 5.5e-185 652.5 673 51.7
Sed0003847 Sechium edule HOM05D004501 ORTHO05D004944 5.5e-185 652.5 711 50.4
Gohir.D12G217800 Gossypium hirsutum HOM05D004501 ORTHO05D004944 7.2e-185 652.1 813 47.1
Rhsim07G0115200 Rhododendron simsii HOM05D004501 ORTHO05D004944 2.7e-184 650.2 830 45.5
MELO3C005513.2 Cucumis melo HOM05D004501 ORTHO05D004944 3.6e-184 649.8 709 51.3
Pp3c10_5410 Physcomitrium patens HOM05D004501 ORTHO05D004944 4.7e-184 649.4 1078 40.5
Pp3c24_4970 Physcomitrium patens HOM05D004501 ORTHO05D004944 6.1e-184 649.0 1068 40.5
SGA_v2.0_scaffold104G30193 Striga asiatica HOM05D004501 ORTHO05D004944 1.8e-183 647.5 707 49.6
Aa31LG5G19800 Aethionema arabicum HOM05D004501 ORTHO05D004944 2.3e-183 647.1 722 47.8
AUR62007118 Chenopodium quinoa HOM05D004501 ORTHO05D004944 3.0e-183 646.7 673 50.4
BcaB02g09084 Brassica carinata HOM05D004501 ORTHO05D004944 4.0e-183 646.4 675 50.8
A04p30230 Brassica napus HOM05D004501 ORTHO05D004944 7.5e-182 642.1 673 50.4
CDE11G0214 Ceratophyllum demersum HOM05D004501 ORTHO05D004944 9.8e-182 641.7 677 50.7
FAN18G4013 Fragaria x ananassa HOM05D004501 ORTHO05D004944 1.3e-181 641.3 755 47.9
arahy.Tifrunner.gnm1.ann1.0753T9 Arachis hypogaea HOM05D004501 ORTHO05D004944 3.7e-181 639.8 682 51.0
arahy.Tifrunner.gnm1.ann1.F6SWGC Arachis hypogaea HOM05D004501 ORTHO05D004944 3.7e-181 639.8 682 51.0
Duzib205G0832 Durio zibethinus HOM05D004501 ORTHO05D004944 1.1e-180 638.3 717 49.8
ClCG01G004260 Citrullus lanatus HOM05D004501 ORTHO05D004944 1.4e-180 637.9 754 48.4
Oeu027013.1 Olea europaea HOM05D004501 ORTHO05D004944 4.1e-180 636.3 713 48.9
C04p67630 Brassica napus HOM05D004501 ORTHO05D004944 1.6e-179 634.4 673 49.9
SMO356G0217 Selaginella moellendorffii HOM05D004501 ORTHO05D004944 7.7e-179 632.1 649 50.5
Gohir.D03G165700 Gossypium hirsutum HOM05D004501 ORTHO05D004944 1.0e-178 631.7 810 45.6
BraA04t18485Z Brassica rapa HOM05D004501 ORTHO05D004944 2.2e-178 630.6 694 48.7
Gorai.003G175400 Gossypium raimondii HOM05D004501 ORTHO05D004944 3.8e-178 629.8 810 45.2
Lsat_1_v5_gn_6_93441 Lactuca sativa HOM05D004501 ORTHO05D004944 6.5e-178 629.0 671 50.1
HanXRQChr03g0088961 Helianthus annuus HOM05D004501 ORTHO05D004944 9.4e-177 625.2 675 50.5
Gohir.A03G006500 Gossypium hirsutum HOM05D004501 ORTHO05D004944 2.1e-176 624.0 782 46.3
BolC4t28262H Brassica oleracea HOM05D004501 ORTHO05D004944 4.7e-176 622.9 692 48.6
Duzib068G0690 Durio zibethinus HOM05D004501 ORTHO05D004944 4.7e-176 622.9 675 51.4
Os03g0737200 Oryza sativa ssp. japonica HOM05D004501 ORTHO05D004944 9.8e-174 615.1 671 48.1
BcaB01g03573 Brassica carinata HOM05D004501 ORTHO05D004944 4.9e-173 612.8 674 49.1
Zm00001eb056470 Zea mays HOM05D004501 ORTHO05D004944 1.5e-169 601.3 708 45.6
Nitab4.5_0010602g0010 Nicotiana tabacum HOM05D004501 ORTHO05D004944 2.8e-168 597.0 872 41.2
Peaxi162Scf00346g00112 Petunia axillaris HOM05D004501 ORTHO05D004944 3.6e-168 596.7 718 45.8
TPR.G18132 Trifolium pratense HOM05D004501 ORTHO05D004944 6.8e-167 592.4 720 47.4
Actinidia02160 Actinidia chinensis HOM05D004501 ORTHO05D004944 3.4e-166 590.1 708 45.8
CDE02G3094 Ceratophyllum demersum HOM05D004501 ORTHO05D004944 3.4e-166 590.1 680 48.2
BcaC01g05462 Brassica carinata HOM05D004501 ORTHO05D004944 9.2e-164 582.0 728 44.8
AUR62019990 Chenopodium quinoa HOM05D004501 ORTHO05D004944 1.2e-163 581.6 673 47.4
CiPaw.12G049700 Carya illinoinensis HOM05D004501 ORTHO05D004944 2.3e-162 577.4 673 48.6
GSVIVG01005813001 Vitis vinifera HOM05D004501 ORTHO05D004944 2.5e-161 573.9 766 45.6
Nitab4.5_0001590g0040 Nicotiana tabacum HOM05D004501 ORTHO05D004944 1.7e-157 561.2 701 45.2
Rhsim13G0032200 Rhododendron simsii HOM05D004501 ORTHO05D004944 2.5e-153 547.4 608 49.7
Hma1.2p1_1196F.1_g265990 Hydrangea macrophylla HOM05D004501 ORTHO05D004944 2.8e-152 543.9 541 52.7
HPP92_002600 Vanilla planifolia HOM05D004501 ORTHO05D004944 4.4e-150 536.6 668 44.3
C03p26410 Brassica napus HOM05D004501 ORTHO05D004944 3.2e-148 530.4 711 42.6
Zm00001eb215300 Zea mays HOM05D004501 ORTHO05D004944 7.3e-137 492.7 563 45.5
CBR_g20363 Chara braunii HOM05D004501 ORTHO05D004944 8.9e-135 485.7 675 42.2
AagrBONN_evm.TU.Sc2ySwM_368.3343 Anthoceros agrestis HOM05D004501 ORTHO05D004944 1.5e-134 485.0 590 46.6
Dinv39174 Davidia involucrata HOM05D004501 ORTHO05D004944 1.0e-130 472.2 427 55.3
TAR374G0010 Trochodendron aralioides HOM05D004501 ORTHO05D004944 4.8e-128 463.4 413 56.2
CSS0040587 Camellia sinensis var. sinensis HOM05D004501 ORTHO05D004944 1.2e-118 432.2 502 47.6
BolC3t15027H Brassica oleracea HOM05D004501 ORTHO05D004944 7.9e-115 419.5 491 45.4
unitig_0.g1052 Utricularia gibba HOM05D004501 ORTHO05D004944 1.4e-108 398.7 675 37.5
DCAR_020178 Daucus carota HOM05D004501 ORTHO05D004944 6.7e-106 389.8 479 45.9
CSS0032615 Camellia sinensis var. sinensis HOM05D004501 ORTHO05D004944 1.2e-94 352.4 414 45.9
Actinidia14399 Actinidia chinensis HOM05D004501 ORTHO05D004944 2.6e-78 298.1 511 36.6
MD06G1054400 Malus domestica HOM05D004501 ORTHO05D004944 9.1e-71 273.1 235 59.6
Cpa.g.sc776.4 Carica papaya HOM05D004501 ORTHO05D004944 4.0e-66 257.7 290 49.0
MD06G1054200 Malus domestica HOM05D004501 ORTHO05D004944 1.3e-64 252.7 447 38.7
C04p07690 Brassica napus HOM05D004501 ORTHO05D004944 1.6e-62 245.7 418 37.3
SHI29866 Sapria himalayana HOM05D004501 ORTHO05D004944 2.5e-60 238.4 240 53.3
CSS0028018 Camellia sinensis var. sinensis HOM05D004501 ORTHO05D004944 4.0e-58 231.1 180 60.6
TAR374G0951 Trochodendron aralioides HOM05D004501 ORTHO05D004944 4.0e-58 231.1 633 32.4
DCAR_020177 Daucus carota HOM05D004501 ORTHO05D004944 1.3e-53 216.1 183 60.1
CSS0011270 Camellia sinensis var. sinensis HOM05D004501 ORTHO05D004944 1.2e-49 203.0 175 57.7
HanXRQChr15g0495741 Helianthus annuus HOM05D004501 ORTHO05D004944 1.4e-42 179.5 247 43.7
BolC4t22385H Brassica oleracea HOM05D004501 ORTHO05D004944 6.8e-42 177.2 245 42.0
FAN04G2417 Fragaria x ananassa HOM05D004501 ORTHO05D004944 1.3e-40 172.9 133 63.9
Cpa.g.sc776.5 Carica papaya HOM05D004501 ORTHO05D004944 8.3e-40 170.2 137 56.9
PRCOL_00000429 Prasinoderma coloniale HOM05D004501 ORTHO05D004944 8.6e-37 160.2 529 27.8
CSS0007149 Camellia sinensis var. sinensis HOM05D004501 ORTHO05D004944 1.5e-36 159.5 132 57.6
BolC4t22386H Brassica oleracea HOM05D004501 ORTHO05D004944 1.6e-35 156.0 220 43.6
Zm00001eb047720 Zea mays HOM05D004501 ORTHO05D004944 1.4e-34 152.9 114 62.3
Zm00001eb142020 Zea mays HOM05D004501 ORTHO05D004944 1.2e-30 139.8 173 43.4
CAN.G201.38 Capsicum annuum HOM05D004501 ORTHO05D004944 7.1e-23 114.0 316 29.1
GSVIVG01006616001 Vitis vinifera HOM05D004501 ORTHO05D004944 6.2e-19 100.9 80 57.5
MCO16G596 Micromonas commoda HOM05D004501 ORTHO05D004944 2.0e-17 95.9 565 24.6
CAN.G26.29 Capsicum annuum HOM05D004501 ORTHO05D004944 4.0e-10 71.6 181 27.6
Sed0019349 Sechium edule HOM05D004501 ORTHO05D004944 1.7e-08 66.2 98 39.8
Cre16.g683437 Chlamydomonas reinhardtii HOM05D004501 ORTHO05D004944 2.4e-07 62.4 557 22.6
CSS0048159 Camellia sinensis var. sinensis HOM05D004501 ORTHO05D004944 1.6e-06 59.7 42 64.3
BcaC02g12114 Brassica carinata HOM05D004501 ORTHO05D023925 2.7e-06 58.9 100 38.0


User provided reference genes

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