Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SEGI_38105 Sequoiadendron giganteum HOM05D003766 ORTHO05D004607 5.0e-296 1020.8 685 100.0
ATR0753G133 Amborella trichopoda HOM05D003766 ORTHO05D004607 1.3e-182 644.0 674 72.1
MBI19_g04409_MAGBIO Magnolia biondii HOM05D003766 ORTHO05D004607 7.7e-180 634.8 674 66.6
Nn3g18290 Nelumbo nucifera HOM05D003766 ORTHO05D004607 5.7e-175 618.6 666 70.3
Cpa.g.sc3.393 Carica papaya HOM05D003766 ORTHO05D004607 2.8e-174 616.3 665 66.5
CSS0048248 Camellia sinensis var. sinensis HOM05D003766 ORTHO05D004607 4.8e-174 615.5 675 66.8
Manes.06G005800 Manihot esculenta HOM05D003766 ORTHO05D004607 6.3e-174 615.1 663 70.0
Dinv04134 Davidia involucrata HOM05D003766 ORTHO05D004607 7.0e-173 611.7 616 73.2
Aqoxy3G02431 Aquilegia oxysepala HOM05D003766 ORTHO05D004607 9.1e-173 611.3 672 67.4
FAN13G1632 Fragaria x ananassa HOM05D003766 ORTHO05D004607 4.5e-172 609.0 675 65.3
TWI60G0360 Tripterygium wilfordii HOM05D003766 ORTHO05D004607 3.8e-171 605.9 678 65.6
Sc10g0009160 Simmondsia chinensis HOM05D003766 ORTHO05D004607 1.4e-170 604.0 681 68.9
EL10Ac8g19505 Beta vulgaris HOM05D003766 ORTHO05D004607 1.9e-170 603.6 666 68.9
FvH4_5g17420 Fragaria vesca HOM05D003766 ORTHO05D004607 2.5e-170 603.2 677 68.8
FAN18G4514 Fragaria x ananassa HOM05D003766 ORTHO05D004607 5.5e-170 602.1 677 68.8
TWI81G0458 Tripterygium wilfordii HOM05D003766 ORTHO05D004607 5.5e-170 602.1 670 67.3
Atru.chr9.1710 Acer truncatum HOM05D003766 ORTHO05D004607 2.7e-169 599.7 672 66.2
Lalb_Chr09g0330351 Lupinus albus HOM05D003766 ORTHO05D004607 2.7e-169 599.7 682 68.9
RcHm_v2.0_Chr7g0178271 Rosa chinensis HOM05D003766 ORTHO05D004607 2.7e-169 599.7 668 60.5
Thecc.03G055500 Theobroma cacao HOM05D003766 ORTHO05D004607 1.8e-168 597.0 673 65.7
Prupe.5G234000 Prunus persica HOM05D003766 ORTHO05D004607 2.3e-168 596.7 678 68.0
Potri.015G038100 Populus trichocarpa HOM05D003766 ORTHO05D004607 3.0e-168 596.3 680 68.4
Hund06721 Selenicereus undatus HOM05D003766 ORTHO05D004607 3.9e-168 595.9 666 69.5
FAN04G2446 Fragaria x ananassa HOM05D003766 ORTHO05D004607 5.2e-168 595.5 681 68.0
PSO478G2458 Papaver somniferum HOM05D003766 ORTHO05D004607 5.2e-168 595.5 683 66.6
Mapoly0093s0082 Marchantia polymorpha HOM05D003766 ORTHO05D004607 6.7e-168 595.1 676 59.6
DCAR_029422 Daucus carota HOM05D003766 ORTHO05D004607 8.8e-168 594.7 692 63.6
FAN08G2416 Fragaria x ananassa HOM05D003766 ORTHO05D004607 1.1e-167 594.3 681 62.0
Eucgr.B00997 Eucalyptus grandis HOM05D003766 ORTHO05D004607 1.5e-167 594.0 609 68.8
Lalb_Chr05g0221621 Lupinus albus HOM05D003766 ORTHO05D004607 5.7e-167 592.0 681 66.1
Actinidia09075 Actinidia chinensis HOM05D003766 ORTHO05D004607 9.7e-167 591.3 677 64.4
MD14G1236800 Malus domestica HOM05D003766 ORTHO05D004607 1.3e-166 590.9 669 68.3
ECA232G0010 Erigeron canadensis HOM05D003766 ORTHO05D004607 1.7e-166 590.5 673 65.2
PSO017G5688 Papaver somniferum HOM05D003766 ORTHO05D004607 1.7e-166 590.5 683 66.0
Ah.14g085990 Amaranthus hybridus HOM05D003766 ORTHO05D004607 2.2e-166 590.1 677 66.2
AUR62042013 Chenopodium quinoa HOM05D003766 ORTHO05D004607 4.8e-166 589.0 676 67.2
Potri.012G046300 Populus trichocarpa HOM05D003766 ORTHO05D004607 8.2e-166 588.2 679 66.9
CAN.G843.53 Capsicum annuum HOM05D003766 ORTHO05D004607 1.1e-165 587.8 673 64.5
Ciclev10007659m.g Citrus clementina HOM05D003766 ORTHO05D004607 1.8e-165 587.0 675 63.1
PGR044G0562 Punica granatum HOM05D003766 ORTHO05D004607 3.1e-165 586.3 671 69.2
Duzib068G0750 Durio zibethinus HOM05D003766 ORTHO05D004607 5.3e-165 585.5 670 65.2
Migut.I00296 Erythranthe guttata HOM05D003766 ORTHO05D004607 9.1e-165 584.7 686 62.2
Cfa019652 Carpinus fangiana HOM05D003766 ORTHO05D004607 2.0e-164 583.6 680 62.8
TPR.G1449 Trifolium pratense HOM05D003766 ORTHO05D004607 5.9e-164 582.0 613 68.7
Sopen03g037630 Solanum pennellii HOM05D003766 ORTHO05D004607 2.9e-163 579.7 674 67.2
C05p16530 Brassica napus HOM05D003766 ORTHO05D004607 6.5e-163 578.6 656 63.6
A06p14270 Brassica napus HOM05D003766 ORTHO05D004607 8.5e-163 578.2 672 62.6
BraA06t24556Z Brassica rapa HOM05D003766 ORTHO05D004607 8.5e-163 578.2 672 62.6
Aqoxy3G00054 Aquilegia oxysepala HOM05D003766 ORTHO05D004607 1.1e-162 577.8 680 60.3
Ca_17184_v3 Cicer arietinum L. HOM05D003766 ORTHO05D004607 1.1e-162 577.8 609 72.1
Haze_18860 Corylus avellana HOM05D003766 ORTHO05D004607 1.5e-162 577.4 680 62.5
THA.LOC104813927 Tarenaya hassleriana HOM05D003766 ORTHO05D004607 1.9e-162 577.0 603 67.3
Solyc03g118670.3 Solanum lycopersicum HOM05D003766 ORTHO05D004607 2.5e-162 576.6 673 66.7
arahy.Tifrunner.gnm1.ann1.679W5T Arachis hypogaea HOM05D003766 ORTHO05D004607 4.2e-162 575.9 660 68.8
BcaC05g25719 Brassica carinata HOM05D003766 ORTHO05D004607 4.2e-162 575.9 672 62.4
BolC5t30350H Brassica oleracea HOM05D003766 ORTHO05D004607 4.2e-162 575.9 672 62.5
Glyma.08G054900 Glycine max HOM05D003766 ORTHO05D004607 4.2e-162 575.9 677 61.6
Aa31LG7G2830 Aethionema arabicum HOM05D003766 ORTHO05D004607 7.2e-162 575.1 668 62.3
Thhalv10006987m.g Eutrema salsugineum HOM05D003766 ORTHO05D004607 1.2e-161 574.3 666 62.6
Medtr8g107400 Medicago truncatula HOM05D003766 ORTHO05D004607 2.7e-161 573.2 685 66.7
Lj4g0008657 Lotus japonicus HOM05D003766 ORTHO05D004607 3.6e-161 572.8 663 63.7
Sabra15G0036800 Salix brachista HOM05D003766 ORTHO05D004607 3.6e-161 572.8 678 67.8
BcaB07g31816 Brassica carinata HOM05D003766 ORTHO05D004607 8.0e-161 571.6 674 62.3
SalBow7G0490 Salvia bowleyana HOM05D003766 ORTHO05D004607 2.3e-160 570.1 662 63.4
Sp1g16220 Schrenkiella parvula HOM05D003766 ORTHO05D004607 2.3e-160 570.1 666 62.8
Lj5C158T14 Lonicera japonica HOM05D003766 ORTHO05D004607 5.2e-160 568.9 698 60.9
Cc04_g06210 Coffea canephora HOM05D003766 ORTHO05D004607 1.2e-159 567.8 568 71.0
Rhsim08G0126600 Rhododendron simsii HOM05D003766 ORTHO05D004607 1.5e-159 567.4 712 56.2
Aa31LG4G3770 Aethionema arabicum HOM05D003766 ORTHO05D004607 4.4e-159 565.8 611 66.0
Carub.0001s1787 Capsella rubella HOM05D003766 ORTHO05D004607 5.7e-159 565.5 659 62.2
CARHR018810 Cardamine hirsuta HOM05D003766 ORTHO05D004607 7.5e-159 565.1 666 62.0
SGA_v2.0_scaffold102G29891 Striga asiatica HOM05D003766 ORTHO05D004607 7.5e-159 565.1 705 60.1
CARHR066590 Cardamine hirsuta HOM05D003766 ORTHO05D004607 9.7e-159 564.7 658 62.6
Psat4g000160 Pisum sativum HOM05D003766 ORTHO05D004607 1.7e-158 563.9 636 64.9
unitig_750.g28512 Utricularia gibba HOM05D003766 ORTHO05D004607 2.2e-158 563.5 688 59.7
Gohir.D11G002500 Gossypium hirsutum HOM05D003766 ORTHO05D004607 2.8e-158 563.1 676 66.7
AL1G30630 Arabidopsis lyrata HOM05D003766 ORTHO05D004607 6.3e-158 562.0 659 62.2
CDE05G3381 Ceratophyllum demersum HOM05D003766 ORTHO05D004607 6.3e-158 562.0 664 63.0
Gohir.A11G002900 Gossypium hirsutum HOM05D003766 ORTHO05D004607 6.3e-158 562.0 674 66.6
Gorai.007G003500 Gossypium raimondii HOM05D003766 ORTHO05D004607 8.3e-158 561.6 678 66.5
Phvul.002G330600 Phaseolus vulgaris HOM05D003766 ORTHO05D004607 1.8e-157 560.5 618 69.6
arahy.Tifrunner.gnm1.ann1.G74QKM Arachis hypogaea HOM05D003766 ORTHO05D004607 7.0e-157 558.5 686 66.0
Lj9A419T35 Lonicera japonica HOM05D003766 ORTHO05D004607 9.1e-157 558.1 678 65.2
AT1G18260 Arabidopsis thaliana HOM05D003766 ORTHO05D004607 1.2e-156 557.8 661 61.7
Lsat_1_v5_gn_0_34021 Lactuca sativa HOM05D003766 ORTHO05D004607 2.0e-156 557.0 662 65.4
Sed0009438 Sechium edule HOM05D003766 ORTHO05D004607 4.5e-156 555.8 684 62.6
Glyma.05G246700 Glycine max HOM05D003766 ORTHO05D004607 5.9e-156 555.4 675 65.8
AL2G33320 Arabidopsis lyrata HOM05D003766 ORTHO05D004607 1.7e-155 553.9 655 62.1
VMungo0251G1288 Vigna mungo HOM05D003766 ORTHO05D004607 1.7e-155 553.9 684 62.3
MSTRG.11305 Avicennia marina HOM05D003766 ORTHO05D004607 6.5e-155 552.0 669 61.9
TAR622G0358 Trochodendron aralioides HOM05D003766 ORTHO05D004607 8.5e-155 551.6 679 56.1
QL10p029803 Quercus lobata HOM05D003766 ORTHO05D004607 1.5e-154 550.8 685 65.4
ClCG04G010600 Citrullus lanatus HOM05D003766 ORTHO05D004607 9.4e-154 548.1 668 63.8
Thhalv10018231m.g Eutrema salsugineum HOM05D003766 ORTHO05D004607 6.1e-153 545.4 658 60.6
MELO3C002135.2 Cucumis melo HOM05D003766 ORTHO05D004607 1.4e-152 544.3 675 62.5
Pp3c19_13490 Physcomitrium patens HOM05D003766 ORTHO05D004607 1.4e-152 544.3 675 57.0
Oeu015089.1 Olea europaea HOM05D003766 ORTHO05D004607 1.8e-152 543.9 676 65.8
Sabra12G0032400 Salix brachista HOM05D003766 ORTHO05D004607 3.0e-152 543.1 704 63.1
GSVIVG01008448001 Vitis vinifera HOM05D003766 ORTHO05D004607 1.5e-151 540.8 568 60.9
HanXRQChr17g0545731 Helianthus annuus HOM05D003766 ORTHO05D004607 2.6e-151 540.0 635 63.8
Peaxi162Scf00314g00235 Petunia axillaris HOM05D003766 ORTHO05D004607 2.6e-151 540.0 674 65.7
CsaV3_1G007190 Cucumis sativus L. HOM05D003766 ORTHO05D004607 2.2e-150 537.0 679 62.2
Oeu046630.1 Olea europaea HOM05D003766 ORTHO05D004607 2.2e-150 537.0 718 53.9
HanXRQChr15g0492431 Helianthus annuus HOM05D003766 ORTHO05D004607 2.8e-150 536.6 658 59.6
HPP92_011105 Vanilla planifolia HOM05D003766 ORTHO05D004607 2.4e-149 533.5 678 61.4
AUR62043006 Chenopodium quinoa HOM05D003766 ORTHO05D004607 3.1e-149 533.1 561 67.2
Atru.chr9.1724 Acer truncatum HOM05D003766 ORTHO05D004607 4.5e-148 529.3 610 67.2
AT1G73570 Arabidopsis thaliana HOM05D003766 ORTHO05D004607 1.7e-147 527.3 617 52.0
Eucgr.B00877 Eucalyptus grandis HOM05D003766 ORTHO05D004607 1.1e-146 524.6 529 72.4
SMO228G0037 Selaginella moellendorffii HOM05D003766 ORTHO05D004607 1.9e-146 523.9 672 55.8
CiPaw.16G093700 Carya illinoinensis HOM05D003766 ORTHO05D004607 5.9e-140 502.3 622 59.8
CiPaw.15G143700 Carya illinoinensis HOM05D003766 ORTHO05D004607 5.2e-136 489.2 522 74.9
Sp5g28730 Schrenkiella parvula HOM05D003766 ORTHO05D004607 6.8e-136 488.8 670 57.6
Pp3c22_10650 Physcomitrium patens HOM05D003766 ORTHO05D004607 1.6e-132 477.6 635 55.4
Zm00001eb011300 Zea mays HOM05D003766 ORTHO05D004607 6.6e-131 472.2 629 56.4
MD06G1227600 Malus domestica HOM05D003766 ORTHO05D004607 9.8e-127 458.4 533 67.0
Nitab4.5_0003401g0020 Nicotiana tabacum HOM05D003766 ORTHO05D004607 2.1e-124 450.7 673 61.2
Pp3c19_15130 Physcomitrium patens HOM05D003766 ORTHO05D004607 4.4e-119 433.0 511 61.8
Manes.06G005600 Manihot esculenta HOM05D003766 ORTHO05D004607 3.0e-115 420.2 491 67.2
Nitab4.5_0004556g0010 Nicotiana tabacum HOM05D003766 ORTHO05D004607 1.1e-114 418.3 728 55.8
Sed0018638 Sechium edule HOM05D003766 ORTHO05D004607 8.1e-113 412.1 537 64.1
Oeu026275.1 Olea europaea HOM05D003766 ORTHO05D004607 6.4e-110 402.5 506 65.4
HanXRQChr14g0456281 Helianthus annuus HOM05D003766 ORTHO05D004607 5.1e-107 392.9 527 55.8
AagrBONN_evm.TU.Sc2ySwM_228.854 Anthoceros agrestis HOM05D003766 ORTHO05D004607 5.8e-95 352.8 476 62.4
Aqoxy3G00039 Aquilegia oxysepala HOM05D003766 ORTHO05D004607 4.8e-89 333.2 476 62.0
Carub.0002s2031 Capsella rubella HOM05D003766 ORTHO05D004607 1.5e-87 328.2 454 43.2
TAR629G0485 Trochodendron aralioides HOM05D003766 ORTHO05D004607 2.0e-87 327.8 314 58.6
TAR629G3071 Trochodendron aralioides HOM05D003766 ORTHO05D004607 3.4e-87 327.0 243 65.8
vmacro17776 Vaccinium macrocarpon HOM05D003766 ORTHO05D004607 3.1e-80 303.9 314 54.8
vmacro17777 Vaccinium macrocarpon HOM05D003766 ORTHO05D004607 4.2e-77 293.5 302 60.6
COL.COLO4_04795 Corchorus olitorius HOM05D003766 ORTHO05D004607 2.1e-68 264.6 201 77.1
HPP92_011088 Vanilla planifolia HOM05D003766 ORTHO05D004607 5.7e-66 256.5 285 81.8
Zm00001eb398230 Zea mays HOM05D003766 ORTHO05D004607 2.2e-62 244.6 295 46.8
BcaB05g24801 Brassica carinata HOM05D003766 ORTHO05D004607 5.1e-59 233.4 254 48.4
BcaC04g22654 Brassica carinata HOM05D003766 ORTHO05D004607 2.8e-57 227.6 172 64.5
BcaC07g36877 Brassica carinata HOM05D003766 ORTHO05D004607 3.7e-57 227.3 271 48.7
Atru.chr9.1718 Acer truncatum HOM05D003766 ORTHO05D004607 6.3e-57 226.5 216 74.1
BolC2t09163H Brassica oleracea HOM05D003766 ORTHO05D004607 8.2e-57 226.1 319 65.5
Psat4g000240 Pisum sativum HOM05D003766 ORTHO05D004607 1.3e-49 202.2 284 45.1
C02p31190 Brassica napus HOM05D003766 ORTHO05D004607 2.2e-46 191.4 317 39.7
BolC7t40944H Brassica oleracea HOM05D003766 ORTHO05D004607 5.0e-46 190.3 138 67.4
CBR_g40334 Chara braunii HOM05D000019 ORTHO05D000002 3.5e-39 167.5 322 56.5
HPP92_011087 Vanilla planifolia HOM05D003766 ORTHO05D004607 1.1e-37 162.5 228 46.1
Actinidia35129 Actinidia chinensis HOM05D003766 ORTHO05D004607 1.5e-37 162.2 290 72.4
C09p56670 Brassica napus HOM05D003766 ORTHO05D004607 1.5e-37 162.2 111 69.4
QL10p029813 Quercus lobata HOM05D003766 ORTHO05D004607 1.5e-37 162.2 309 35.9
BolC1t04841H Brassica oleracea HOM05D003766 ORTHO05D004607 1.4e-35 155.6 111 67.6
Dinv12692 Davidia involucrata HOM05D003766 ORTHO05D004607 2.0e-34 151.8 87 78.2
QL10p030223 Quercus lobata HOM05D003766 ORTHO05D004607 5.0e-30 137.1 167 47.3
C02p31200 Brassica napus HOM05D003766 ORTHO05D004607 1.1e-24 119.4 127 44.9
COL.COLO4_04913 Corchorus olitorius HOM05D003766 ORTHO05D004607 1.0e-22 112.8 197 40.1
Cre03.g197400 Chlamydomonas reinhardtii HOM05D003766 ORTHO05D004607 2.3e-22 111.7 578 31.5
Hma1.2p1_2524F.1_g323905 Hydrangea macrophylla HOM05D003766 ORTHO05D004607 1.4e-19 102.4 98 53.1
Hma1.2p1_0759F.1_g213970 Hydrangea macrophylla HOM05D003766 ORTHO05D004607 2.3e-19 101.7 95 53.7
Hma1.2p1_0127F.1_g059480 Hydrangea macrophylla HOM05D003766 ORTHO05D004607 8.9e-19 99.8 98 54.1
CBR_g40333 Chara braunii HOM05D003766 ORTHO05D004607 2.6e-18 98.2 118 49.2
Hma1.2p1_0502F.1_g167690 Hydrangea macrophylla HOM05D003766 ORTHO05D004607 1.3e-17 95.9 107 47.7
Cfa023117 Carpinus fangiana HOM05D016742 ORTHO05D028589 8.3e-17 93.2 575 29.6
MCO08G236 Micromonas commoda HOM05D003766 ORTHO05D004607 7.0e-16 90.1 176 36.9
PRCOL_00002904 Prasinoderma coloniale HOM05D003766 ORTHO05D004607 1.2e-12 79.3 201 28.9
C08p01510 Brassica napus HOM05D003766 ORTHO05D004607 1.6e-12 79.0 69 56.5
Sp5g28740 Schrenkiella parvula HOM05D000408 ORTHO05D004607 1.4e-11 75.9 204 30.4
BraA05t20732Z Brassica rapa HOM05D003766 ORTHO05D004607 5.8e-10 70.5 68 50.0
BolC9t56024H Brassica oleracea HOM05D021712 ORTHO05D021656 2.2e-09 68.6 109 40.4
Hma1.2p1_0478F.1_g161250 Hydrangea macrophylla HOM05D003766 ORTHO05D004607 2.9e-09 68.2 52 63.5
A05p35970 Brassica napus HOM05D003766 ORTHO05D004607 3.7e-09 67.8 63 50.8
Oeu002213.1 Olea europaea HOM05D003766 ORTHO05D004607 1.4e-08 65.9 65 50.8
C09p31690 Brassica napus HOM05D021712 ORTHO05D021656 9.2e-08 63.2 56 51.8
Glyma.15G140700 Glycine max HOM05D003766 ORTHO05D004607 1.6e-07 62.4 60 55.0


User provided reference genes

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