Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SEGI_37862 Sequoiadendron giganteum HOM05D002514 ORTHO05D002761 4.0e-57 224.6 115 100.0
MBI03_g13102_MAGBIO Magnolia biondii HOM05D002514 ORTHO05D002761 2.9e-23 112.1 112 54.5
THA.LOC104804533 Tarenaya hassleriana HOM05D002514 ORTHO05D002761 5.1e-20 101.3 112 53.6
Manes.18G139800 Manihot esculenta HOM05D002514 ORTHO05D002761 1.5e-19 99.8 113 53.1
Phvul.008G246100 Phaseolus vulgaris HOM05D002514 ORTHO05D002761 1.5e-19 99.8 112 50.9
Glyma.14G205500 Glycine max HOM05D002514 ORTHO05D002761 5.7e-19 97.8 112 50.9
PSO384G1731 Papaver somniferum HOM05D002514 ORTHO05D002761 5.7e-19 97.8 114 52.6
CiPaw.14G049600 Carya illinoinensis HOM05D002514 ORTHO05D002761 9.7e-19 97.1 111 51.4
Lalb_Chr20g0117321 Lupinus albus HOM05D002514 ORTHO05D002761 9.7e-19 97.1 112 48.2
Ca_05722_v3 Cicer arietinum L. HOM05D002514 ORTHO05D002761 1.6e-18 96.3 112 50.9
Lalb_Chr18g0054141 Lupinus albus HOM05D002514 ORTHO05D002761 2.2e-18 95.9 112 48.2
PSO339G4652 Papaver somniferum HOM05D002514 ORTHO05D002761 2.2e-18 95.9 114 51.8
MBI15_g32290_MAGBIO Magnolia biondii HOM05D002514 ORTHO05D002761 2.8e-18 95.5 111 54.1
Nn3g18244 Nelumbo nucifera HOM05D002514 ORTHO05D002761 3.7e-18 95.1 112 50.9
Eucgr.I02078 Eucalyptus grandis HOM05D002514 ORTHO05D002761 4.8e-18 94.7 112 50.9
Glyma.02G236700 Glycine max HOM05D002514 ORTHO05D002761 4.8e-18 94.7 114 50.0
LjContig00141g0004849 Lotus japonicus HOM05D002514 ORTHO05D002761 4.8e-18 94.7 112 46.4
GSVIVG01024550001 Vitis vinifera HOM05D002514 ORTHO05D002761 4.8e-18 94.7 112 49.1
MD11G1052200 Malus domestica HOM05D002514 ORTHO05D002761 8.2e-18 94.0 112 50.0
CsaV3_1G014460 Cucumis sativus L. HOM05D002514 ORTHO05D002761 1.1e-17 93.6 112 50.0
Actinidia29024 Actinidia chinensis HOM05D002514 ORTHO05D002761 1.4e-17 93.2 112 48.2
Manes.02G211100 Manihot esculenta HOM05D002514 ORTHO05D002761 1.4e-17 93.2 112 51.8
Rhsim05G0232100 Rhododendron simsii HOM05D002514 ORTHO05D002761 1.4e-17 93.2 113 49.6
Hma1.2p1_0170F.1_g075270 Hydrangea macrophylla HOM05D002514 ORTHO05D002761 2.4e-17 92.4 111 48.6
Dinv25356 Davidia involucrata HOM05D002514 ORTHO05D002761 3.1e-17 92.0 113 48.7
CiPaw.13G062700 Carya illinoinensis HOM05D002514 ORTHO05D002761 4.1e-17 91.7 112 47.3
MBI15_g32294_MAGBIO Magnolia biondii HOM05D002514 ORTHO05D002761 5.3e-17 91.3 112 53.6
Haze_24479 Corylus avellana HOM05D002514 ORTHO05D002761 6.9e-17 90.9 105 54.3
MELO3C004807.2 Cucumis melo HOM05D002514 ORTHO05D002761 6.9e-17 90.9 112 50.0
Nn4g24176 Nelumbo nucifera HOM05D002514 ORTHO05D002761 6.9e-17 90.9 111 53.2
TAR369G0620 Trochodendron aralioides HOM05D002514 ORTHO05D002761 6.9e-17 90.9 111 49.5
TAR374G0538 Trochodendron aralioides HOM05D002514 ORTHO05D002761 6.9e-17 90.9 112 50.0
Lalb_Chr15g0085701 Lupinus albus HOM05D002514 ORTHO05D002761 9.0e-17 90.5 112 45.5
Sabra19G0127800 Salix brachista HOM05D002514 ORTHO05D002761 9.0e-17 90.5 114 50.0
Thecc.05G139700 Theobroma cacao HOM05D002514 ORTHO05D002761 9.0e-17 90.5 110 48.2
vmacro14644 Vaccinium macrocarpon HOM05D002514 ORTHO05D002761 1.2e-16 90.1 111 47.7
Cpa.g.sc2.283 Carica papaya HOM05D002514 ORTHO05D002761 1.5e-16 89.7 112 46.4
ClCG03G000040 Citrullus lanatus HOM05D002514 ORTHO05D002761 1.5e-16 89.7 112 49.1
ATR0743G117 Amborella trichopoda HOM05D002514 ORTHO05D002761 2.0e-16 89.4 112 49.1
Ciclev10016252m.g Citrus clementina HOM05D002514 ORTHO05D002761 2.6e-16 89.0 112 46.4
Potri.013G158400 Populus trichocarpa HOM05D002514 ORTHO05D002761 2.6e-16 89.0 113 48.7
Potri.019G131200 Populus trichocarpa HOM05D002514 ORTHO05D002761 3.4e-16 88.6 115 48.7
Sed0020217 Sechium edule HOM05D002514 ORTHO05D002761 4.5e-16 88.2 112 47.3
Cpa.g.sc37.128 Carica papaya HOM05D002514 ORTHO05D002761 5.9e-16 87.8 112 48.2
Lj6g0018593 Lotus japonicus HOM05D002514 ORTHO05D002761 5.9e-16 87.8 112 42.9
Atru.chr10.2340 Acer truncatum HOM05D002514 ORTHO05D002761 7.7e-16 87.4 115 48.7
Aqoxy4G03288 Aquilegia oxysepala HOM05D002514 ORTHO05D002761 7.7e-16 87.4 112 46.4
arahy.Tifrunner.gnm1.ann1.I2SBE2 Arachis hypogaea HOM05D002514 ORTHO05D002761 7.7e-16 87.4 115 47.8
PGR044G1797 Punica granatum HOM05D002514 ORTHO05D002761 7.7e-16 87.4 107 52.3
COL.COLO4_37950 Corchorus olitorius HOM05D002514 ORTHO05D002761 1.0e-15 87.0 110 47.3
Duzib093G0138 Durio zibethinus HOM05D002514 ORTHO05D002761 1.0e-15 87.0 110 47.3
VMungo0647G2513 Vigna mungo HOM05D002514 ORTHO05D002761 1.3e-15 86.7 112 46.4
CSS0022965 Camellia sinensis var. sinensis HOM05D002514 ORTHO05D002761 1.7e-15 86.3 110 46.4
Ca_15067_v3 Cicer arietinum L. HOM05D002514 ORTHO05D002761 2.2e-15 85.9 111 47.7
Dinv28739 Davidia involucrata HOM05D002514 ORTHO05D002761 2.2e-15 85.9 111 46.8
Thhalv10014385m.g Eutrema salsugineum HOM05D002514 ORTHO05D002761 2.2e-15 85.9 112 47.3
Gohir.D11G323600 Gossypium hirsutum HOM05D002514 ORTHO05D002761 2.2e-15 85.9 110 47.3
Gorai.007G353600 Gossypium raimondii HOM05D002514 ORTHO05D002761 2.2e-15 85.9 110 47.3
Medtr3g467620 Medicago truncatula HOM05D002514 ORTHO05D002761 2.9e-15 85.5 111 48.6
Psat5g147120 Pisum sativum HOM05D002514 ORTHO05D002761 2.9e-15 85.5 111 47.7
PGR031G2016 Punica granatum HOM05D002514 ORTHO05D002761 3.8e-15 85.1 112 49.1
Dinv12286 Davidia involucrata HOM05D002514 ORTHO05D002761 5.0e-15 84.7 113 46.0
TWI63G0973 Tripterygium wilfordii HOM05D002514 ORTHO05D002761 5.0e-15 84.7 112 45.5
THA.LOC104814501 Tarenaya hassleriana HOM05D002514 ORTHO05D002761 6.5e-15 84.3 112 47.3
TPR.G28593 Trifolium pratense HOM05D002514 ORTHO05D002761 6.5e-15 84.3 113 46.0
TWI38G0550 Tripterygium wilfordii HOM05D002514 ORTHO05D002761 6.5e-15 84.3 112 45.5
Migut.F01768 Erythranthe guttata HOM05D002514 ORTHO05D002761 8.5e-15 84.0 115 50.4
RcHm_v2.0_Chr2g0109961 Rosa chinensis HOM05D002514 ORTHO05D002761 1.1e-14 83.6 111 45.0
QL07p038553 Quercus lobata HOM05D002514 ORTHO05D002761 1.4e-14 83.2 111 45.0
MD03G1050000 Malus domestica HOM05D002514 ORTHO05D002761 1.9e-14 82.8 111 44.1
FvH4_1g18940 Fragaria vesca HOM05D000446 ORTHO05D000321 2.5e-14 82.4 111 45.0
FAN19G2677 Fragaria x ananassa HOM05D000446 ORTHO05D000321 2.5e-14 82.4 111 45.0
FAN23G0572 Fragaria x ananassa HOM05D002514 ORTHO05D002761 2.5e-14 82.4 111 45.0
AT5G20920 Arabidopsis thaliana HOM05D002514 ORTHO05D002761 4.2e-14 81.6 113 47.8
A10p19120 Brassica napus HOM05D002514 ORTHO05D002761 4.2e-14 81.6 114 47.4
CSS0011497 Camellia sinensis var. sinensis HOM05D002514 ORTHO05D002761 4.2e-14 81.6 112 46.4
TAR633G2627 Trochodendron aralioides HOM05D002514 ORTHO05D002761 4.2e-14 81.6 111 49.5
HanXRQChr08g0230261 Helianthus annuus HOM05D002514 ORTHO05D002761 5.5e-14 81.3 115 46.1
Rhsim01G0243800 Rhododendron simsii HOM05D002514 ORTHO05D002761 5.5e-14 81.3 111 45.0
Aa31LG6G6040 Aethionema arabicum HOM05D002514 ORTHO05D002761 7.2e-14 80.9 114 47.4
Aqoxy1G00469 Aquilegia oxysepala HOM05D002514 ORTHO05D002761 7.2e-14 80.9 113 46.0
AUR62021964 Chenopodium quinoa HOM05D002514 ORTHO05D002761 7.2e-14 80.9 117 43.6
Aa31LG11G8150 Aethionema arabicum HOM05D002514 ORTHO05D002761 9.4e-14 80.5 114 47.4
Duzib132G0156 Durio zibethinus HOM05D002514 ORTHO05D002761 9.4e-14 80.5 110 45.5
Migut.D00813 Erythranthe guttata HOM05D002514 ORTHO05D002761 9.4e-14 80.5 115 48.7
Sp6g23600 Schrenkiella parvula HOM05D002514 ORTHO05D002761 9.4e-14 80.5 112 47.3
Actinidia23834 Actinidia chinensis HOM05D002514 ORTHO05D002761 1.2e-13 80.1 114 43.9
EL10Ac2g02675 Beta vulgaris HOM05D002514 ORTHO05D002761 1.2e-13 80.1 113 43.4
HanXRQChr01g0024741 Helianthus annuus HOM05D002514 ORTHO05D002761 1.2e-13 80.1 115 46.1
Sed0005612 Sechium edule HOM05D002514 ORTHO05D002761 1.2e-13 80.1 113 45.1
FAN26G0333 Fragaria x ananassa HOM05D002514 ORTHO05D002761 1.6e-13 79.7 111 44.1
Sc05g0009180 Simmondsia chinensis HOM05D002514 ORTHO05D002761 1.6e-13 79.7 119 43.7
BraA10t43990Z Brassica rapa HOM05D002514 ORTHO05D002761 2.1e-13 79.3 113 47.8
Carub.0006s1921 Capsella rubella HOM05D002514 ORTHO05D002761 2.7e-13 79.0 114 48.2
FAN28G1715 Fragaria x ananassa HOM05D002514 ORTHO05D002761 2.7e-13 79.0 111 43.2
Hma1.2p1_0161F.1_g072110 Hydrangea macrophylla HOM05D002514 ORTHO05D002761 2.7e-13 79.0 112 44.6
Psat2g049560 Pisum sativum HOM05D002514 ORTHO05D002761 2.7e-13 79.0 112 46.4
arahy.Tifrunner.gnm1.ann1.Q7BQ00 Arachis hypogaea HOM05D002514 ORTHO05D002761 3.6e-13 78.6 109 48.6
FAN16G0138 Fragaria x ananassa HOM05D002514 ORTHO05D002761 3.6e-13 78.6 111 44.1
FAN21G0909 Fragaria x ananassa HOM05D002514 ORTHO05D002761 4.6e-13 78.2 111 42.3
FAN21G2549 Fragaria x ananassa HOM05D002514 ORTHO05D002761 4.6e-13 78.2 111 42.3
unitig_0.g2146 Utricularia gibba HOM05D002514 ORTHO05D002761 4.6e-13 78.2 114 47.4
AL6G32480 Arabidopsis lyrata HOM05D002514 ORTHO05D002761 6.1e-13 77.8 113 46.0
CSS0042687 Camellia sinensis var. sinensis HOM05D002514 ORTHO05D002761 7.9e-13 77.4 112 44.6
FAN25G2070 Fragaria x ananassa HOM05D002514 ORTHO05D002761 7.9e-13 77.4 111 42.3
C02p10510 Brassica napus HOM05D002514 ORTHO05D002761 1.4e-12 76.6 117 45.3
SalBow2G2930 Salvia bowleyana HOM05D002514 ORTHO05D002761 1.4e-12 76.6 110 49.1
Actinidia34500 Actinidia chinensis HOM05D002514 ORTHO05D002761 1.8e-12 76.3 111 42.3
BNapus_Darmor_BZH_scaffold_38p01270 Brassica napus HOM05D002514 ORTHO05D002761 2.3e-12 75.9 115 45.2
BraA02t05603Z Brassica rapa HOM05D002514 ORTHO05D002761 2.3e-12 75.9 115 45.2
CSS0021667 Camellia sinensis var. sinensis HOM05D002514 ORTHO05D002761 3.0e-12 75.5 107 43.0
CARHR191930 Cardamine hirsuta HOM05D002514 ORTHO05D002761 3.0e-12 75.5 113 44.2
BcaC03g13813 Brassica carinata HOM05D002514 ORTHO05D002761 3.9e-12 75.1 115 45.2
Cc00_g18920 Coffea canephora HOM05D002514 ORTHO05D002761 3.9e-12 75.1 114 45.6
Lj2A1103T31 Lonicera japonica HOM05D002514 ORTHO05D002761 3.9e-12 75.1 106 47.2
arahy.Tifrunner.gnm1.ann1.AJ6S3U Arachis hypogaea HOM05D002514 ORTHO05D002761 6.7e-12 74.3 114 43.9
Os03g0333300 Oryza sativa ssp. japonica HOM05D002514 ORTHO05D002761 6.7e-12 74.3 114 47.4
SMO116G0277 Selaginella moellendorffii HOM05D002514 ORTHO05D002761 6.7e-12 74.3 121 42.1
arahy.Tifrunner.gnm1.ann1.UHX5DQ Arachis hypogaea HOM05D002514 ORTHO05D002761 8.8e-12 73.9 114 43.0
HPP92_014262 Vanilla planifolia HOM05D002514 ORTHO05D002761 1.1e-11 73.6 115 46.1
Zm00001eb015940 Zea mays HOM05D002514 ORTHO05D002761 1.1e-11 73.6 115 44.3
Mapoly0039s0004 Marchantia polymorpha HOM05D002514 ORTHO05D002761 2.0e-11 72.8 122 41.8
BolC2t07082H Brassica oleracea HOM05D002514 ORTHO05D002761 3.3e-11 72.0 115 44.3
Peaxi162Scf00395g00123 Petunia axillaris HOM05D002514 ORTHO05D002761 3.3e-11 72.0 112 42.9
Sopen06g033980 Solanum pennellii HOM05D002514 ORTHO05D002761 5.7e-11 71.2 110 40.0
Nitab4.5_0002902g0110 Nicotiana tabacum HOM05D002514 ORTHO05D002761 7.4e-11 70.9 111 40.5
Os07g0681000 Oryza sativa ssp. japonica HOM05D002514 ORTHO05D002761 7.4e-11 70.9 114 45.6
Gohir.A11G308200 Gossypium hirsutum HOM05D002514 ORTHO05D002761 9.7e-11 70.5 110 40.9
Nitab4.5_0000105g0330 Nicotiana tabacum HOM05D002514 ORTHO05D002761 9.7e-11 70.5 111 41.4
BcaB05g22802 Brassica carinata HOM05D002514 ORTHO05D002761 1.3e-10 70.1 116 42.2
AUR62012693 Chenopodium quinoa HOM05D002514 ORTHO05D002761 1.7e-10 69.7 117 38.5
Solyc06g082580.4 Solanum lycopersicum HOM05D002514 ORTHO05D002761 1.7e-10 69.7 110 40.0
SGA_v2.0_scaffold19G08866 Striga asiatica HOM05D002514 ORTHO05D002761 2.2e-10 69.3 117 41.9
Haze_19633 Corylus avellana HOM05D002514 ORTHO05D002761 2.8e-10 68.9 111 41.4
Nitab4.5_0000002g0320 Nicotiana tabacum HOM05D002514 ORTHO05D002761 2.8e-10 68.9 111 42.3
Nitab4.5_0007260g0020 Nicotiana tabacum HOM05D002514 ORTHO05D002761 2.8e-10 68.9 111 39.6
Oeu015579.1 Olea europaea HOM05D002514 ORTHO05D002761 2.8e-10 68.9 110 47.3
QL01p024399 Quercus lobata HOM05D002514 ORTHO05D002761 2.8e-10 68.9 111 39.6
Hund15779 Selenicereus undatus HOM05D002514 ORTHO05D002761 2.8e-10 68.9 127 37.8
unitig_747.g21443 Utricularia gibba HOM05D002514 ORTHO05D002761 2.8e-10 68.9 117 44.4
DCAR_004793 Daucus carota HOM05D002514 ORTHO05D002761 3.7e-10 68.6 121 39.7
COL.COLO4_34261 Corchorus olitorius HOM05D002514 ORTHO05D002761 4.8e-10 68.2 110 42.7
ECA236G2907 Erigeron canadensis HOM05D002514 ORTHO05D002761 4.8e-10 68.2 118 41.5
FvH4_3g40800 Fragaria vesca HOM05D002514 ORTHO05D002761 4.8e-10 68.2 110 39.1
COL.COLO4_13027 Corchorus olitorius HOM05D002514 ORTHO05D002761 8.2e-10 67.4 92 45.7
ECA247G3101 Erigeron canadensis HOM05D002514 ORTHO05D002761 1.4e-09 66.6 114 36.8
Sp6g03660 Schrenkiella parvula HOM05D002514 ORTHO05D002761 1.8e-09 66.2 119 41.2
SGA_v2.0_scaffold25G11007 Striga asiatica HOM05D002514 ORTHO05D002761 1.8e-09 66.2 115 42.6
CAN.G874.73 Capsicum annuum HOM05D002514 ORTHO05D002761 2.4e-09 65.9 110 36.4
MSTRG.18537 Avicennia marina HOM05D002514 ORTHO05D002761 5.3e-09 64.7 114 43.0
C09p32330 Brassica napus HOM05D002514 ORTHO05D002761 9.1e-09 63.9 116 38.8
BcaC04g21394 Brassica carinata HOM05D002514 ORTHO05D002761 1.2e-08 63.5 116 38.8
BolC9t56078H Brassica oleracea HOM05D002514 ORTHO05D002761 1.2e-08 63.5 116 38.8
FAN11G3747 Fragaria x ananassa HOM05D002514 ORTHO05D002761 1.5e-08 63.2 113 37.2
A09p25330 Brassica napus HOM05D002514 ORTHO05D002761 2.6e-08 62.4 117 40.2
BraA09t38115Z Brassica rapa HOM05D002514 ORTHO05D002761 2.6e-08 62.4 117 40.2
Prupe.6G039800 Prunus persica HOM05D002514 ORTHO05D002761 2.6e-08 62.4 111 36.0
RcHm_v2.0_Chr5g0073521 Rosa chinensis HOM05D002514 ORTHO05D002761 2.6e-08 62.4 137 35.0
Lj2C58T4 Lonicera japonica HOM05D002514 ORTHO05D002761 3.4e-08 62.0 112 36.6
Lj3A940G59 Lonicera japonica HOM05D002514 ORTHO05D002761 3.4e-08 62.0 95 38.9
Lsat_1_v5_gn_9_39701 Lactuca sativa HOM05D002514 ORTHO05D002761 4.5e-08 61.6 112 39.3
BcaB08g37319 Brassica carinata HOM05D002514 ORTHO05D002761 5.9e-08 61.2 117 39.3
DCAR_000505 Daucus carota HOM05D002514 ORTHO05D002761 5.9e-08 61.2 112 36.6
EL10Ac8g20043 Beta vulgaris HOM05D002514 ORTHO05D002761 7.7e-08 60.8 164 29.9
Peaxi162Scf00352g00074 Petunia axillaris HOM05D002514 ORTHO05D002761 1.0e-07 60.5 109 36.7
Thhalv10022299m.g Eutrema salsugineum HOM05D002514 ORTHO05D002761 1.3e-07 60.1 113 41.6
PGSC0003DMG400030471 Solanum tuberosum HOM05D002514 ORTHO05D002761 1.3e-07 60.1 110 35.5
BcaC04g19488 Brassica carinata HOM05D002514 ORTHO05D002761 2.2e-07 59.3 119 39.5
C09p55190 Brassica napus HOM05D002514 ORTHO05D002761 2.2e-07 59.3 119 39.5
BolC9t58382H Brassica oleracea HOM05D002514 ORTHO05D002761 2.2e-07 59.3 119 39.5
BolC9t58384H Brassica oleracea HOM05D002514 ORTHO05D002761 2.2e-07 59.3 119 39.5
Cfa011843 Carpinus fangiana HOM05D002514 ORTHO05D002761 3.8e-07 58.5 107 38.3
Sabra13G0127200 Salix brachista HOM05D002514 ORTHO05D002761 3.8e-07 58.5 72 51.4
Lj2A490T27 Lonicera japonica HOM05D002514 ORTHO05D002761 5.0e-07 58.2 108 36.1
Pp3c27_190 Physcomitrium patens HOM05D002514 ORTHO05D002761 6.5e-07 57.8 112 40.2
Medtr5g075530 Medicago truncatula HOM05D002514 ORTHO05D002761 1.1e-06 57.0 117 36.8
Lsat_1_v5_gn_5_175101 Lactuca sativa HOM05D002514 ORTHO05D002761 1.9e-06 56.2 113 35.4
vmacro02869 Vaccinium macrocarpon HOM05D002514 ORTHO05D002761 2.5e-06 55.8 113 32.7
Ah.10g026410 Amaranthus hybridus HOM05D002514 ORTHO05D002761 5.5e-06 54.7 103 36.9
Ah.10g029600 Amaranthus hybridus HOM05D002514 ORTHO05D002761 5.5e-06 54.7 103 36.9
ECA247G0787 Erigeron canadensis HOM05D002514 ORTHO05D002761 5.5e-06 54.7 116 32.8
Zm00001eb330750 Zea mays HOM05D002514 ORTHO05D002761 5.5e-06 54.7 118 36.4
CsaV3_1G004800 Cucumis sativus L. HOM05D002514 ORTHO05D002761 7.2e-06 54.3 57 61.4


User provided reference genes

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