Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SEGI_37753 Sequoiadendron giganteum HOM05D004362 ORTHO05D005650 9.0e-107 390.2 188 100.0
Nn8g40841 Nelumbo nucifera HOM05D004362 ORTHO05D005650 5.0e-89 331.3 188 82.4
CDE05G1737 Ceratophyllum demersum HOM05D004362 ORTHO05D005650 6.5e-89 330.9 188 81.4
ATR0706G220 Amborella trichopoda HOM05D004362 ORTHO05D005650 8.5e-89 330.5 188 81.4
CDE05G0863 Ceratophyllum demersum HOM05D004362 ORTHO05D005650 4.2e-88 328.2 188 80.9
Nn4g25890 Nelumbo nucifera HOM05D004362 ORTHO05D005650 2.1e-87 325.9 188 81.4
Nitab4.5_0000250g0130 Nicotiana tabacum HOM05D004362 ORTHO05D005650 4.7e-87 324.7 188 79.8
Aqoxy2G03013 Aquilegia oxysepala HOM05D004362 ORTHO05D005650 1.0e-86 323.6 188 79.8
Peaxi162Scf00399g00066 Petunia axillaris HOM05D004362 ORTHO05D005650 1.4e-86 323.2 188 80.3
Sopen01g041670 Solanum pennellii HOM05D004362 ORTHO05D005650 2.3e-86 322.4 188 79.3
TAR362G1261 Trochodendron aralioides HOM05D004362 ORTHO05D005650 3.0e-86 322.0 188 78.2
TAR633G1411 Trochodendron aralioides HOM05D004362 ORTHO05D005650 3.0e-86 322.0 188 78.7
Nitab4.5_0002393g0040 Nicotiana tabacum HOM05D004362 ORTHO05D005650 3.9e-86 321.6 188 78.2
Solyc01g098100.2 Solanum lycopersicum HOM05D004362 ORTHO05D005650 3.9e-86 321.6 188 79.3
Sopen00g012890 Solanum pennellii HOM05D004362 ORTHO05D005650 3.9e-86 321.6 188 79.3
PGSC0003DMG400022496 Solanum tuberosum HOM05D004362 ORTHO05D005650 3.9e-86 321.6 188 78.7
FvH4_4g00380 Fragaria vesca HOM05D004362 ORTHO05D005650 5.2e-86 321.2 188 79.8
Hma1.2p1_0698F.1_g205210 Hydrangea macrophylla HOM05D004362 ORTHO05D005650 5.2e-86 321.2 188 79.8
FAN17G1564 Fragaria x ananassa HOM05D004362 ORTHO05D005650 6.7e-86 320.9 188 79.8
FAN22G1477 Fragaria x ananassa HOM05D004362 ORTHO05D005650 6.7e-86 320.9 188 79.8
FvH4_6g25030 Fragaria vesca HOM05D004362 ORTHO05D005650 1.1e-85 320.1 188 79.3
RcHm_v2.0_Chr7g0221961 Rosa chinensis HOM05D004362 ORTHO05D005650 1.1e-85 320.1 188 79.3
Actinidia01468 Actinidia chinensis HOM05D004362 ORTHO05D005650 1.5e-85 319.7 188 78.7
MD17G1218500 Malus domestica HOM05D004362 ORTHO05D005650 1.5e-85 319.7 188 78.7
Cc00_g10540 Coffea canephora HOM05D004362 ORTHO05D005650 2.6e-85 318.9 188 81.4
MD03G1177300 Malus domestica HOM05D004362 ORTHO05D005650 2.6e-85 318.9 188 78.7
RcHm_v2.0_Chr1g0332291 Rosa chinensis HOM05D004362 ORTHO05D005650 3.3e-85 318.5 188 78.7
CAN.G134.195 Capsicum annuum HOM05D004362 ORTHO05D005650 5.7e-85 317.8 188 78.7
Prupe.3G093900 Prunus persica HOM05D004362 ORTHO05D005650 7.4e-85 317.4 188 77.7
CDE05G2612 Ceratophyllum demersum HOM05D004362 ORTHO05D005650 9.7e-85 317.0 180 80.6
Ciclev10005994m.g Citrus clementina HOM05D004362 ORTHO05D005650 1.3e-84 316.6 188 78.7
Rhsim04G0220600 Rhododendron simsii HOM05D004362 ORTHO05D005650 2.8e-84 315.5 188 77.7
Aa31LG10G6340 Aethionema arabicum HOM05D004362 ORTHO05D005650 3.7e-84 315.1 188 77.7
Aqoxy5G03978 Aquilegia oxysepala HOM05D004362 ORTHO05D005650 3.7e-84 315.1 188 77.7
PSO063G3233 Papaver somniferum HOM05D004362 ORTHO05D005650 6.3e-84 314.3 188 76.6
PSO170G0314 Papaver somniferum HOM05D004362 ORTHO05D005650 6.3e-84 314.3 188 76.6
PSO675G6259 Papaver somniferum HOM05D004362 ORTHO05D005650 6.3e-84 314.3 188 76.6
Atru.chr4.2815 Acer truncatum HOM05D004362 ORTHO05D005650 8.2e-84 313.9 188 78.7
PSO541G6165 Papaver somniferum HOM05D004362 ORTHO05D005650 8.2e-84 313.9 188 76.1
CiPaw.01G149400 Carya illinoinensis HOM05D004362 ORTHO05D005650 1.1e-83 313.5 188 76.6
vmacro08137 Vaccinium macrocarpon HOM05D004362 ORTHO05D005650 1.4e-83 313.2 188 77.1
CSS0031921 Camellia sinensis var. sinensis HOM05D004362 ORTHO05D005650 1.8e-83 312.8 188 77.7
CSS0044915 Camellia sinensis var. sinensis HOM05D004362 ORTHO05D005650 1.8e-83 312.8 188 77.7
CANSAT11G1206 Cannabis sativa HOM05D004362 ORTHO05D005650 1.8e-83 312.8 188 76.1
CANSAT56G3245 Cannabis sativa HOM05D004362 ORTHO05D005650 1.8e-83 312.8 188 76.1
Cpa.g.sc16.164 Carica papaya HOM05D004362 ORTHO05D005650 2.4e-83 312.4 188 76.6
MELO3C006657.2 Cucumis melo HOM05D004362 ORTHO05D005650 2.4e-83 312.4 188 76.6
DCAR_003777 Daucus carota HOM05D004362 ORTHO05D005650 2.4e-83 312.4 188 78.2
QL06p008685 Quercus lobata HOM05D004362 ORTHO05D005650 2.4e-83 312.4 187 77.0
Manes.03G194200 Manihot esculenta HOM05D004362 ORTHO05D005650 3.1e-83 312.0 188 77.1
Sp7g14130 Schrenkiella parvula HOM05D004362 ORTHO05D005650 3.1e-83 312.0 188 77.1
Carub.0007s2590 Capsella rubella HOM05D004362 ORTHO05D005650 4.1e-83 311.6 188 77.7
Ca_15496_v3 Cicer arietinum L. HOM05D004362 ORTHO05D005650 4.1e-83 311.6 188 76.1
THA.LOC104820258 Tarenaya hassleriana HOM05D004362 ORTHO05D005650 4.1e-83 311.6 188 77.1
BolC1t02658H Brassica oleracea HOM05D004362 ORTHO05D005650 5.3e-83 311.2 188 77.1
VMungo1383G0988 Vigna mungo HOM05D004362 ORTHO05D005650 5.3e-83 311.2 188 75.5
Thhalv10026330m.g Eutrema salsugineum HOM05D004362 ORTHO05D005650 7.0e-83 310.8 188 76.6
Phvul.003G104500 Phaseolus vulgaris HOM05D004362 ORTHO05D005650 7.0e-83 310.8 188 75.5
Pp3c15_15310 Physcomitrium patens HOM05D004362 ORTHO05D005650 7.0e-83 310.8 188 77.1
A01p21760 Brassica napus HOM05D004362 ORTHO05D005650 9.1e-83 310.5 188 76.6
A03p49320 Brassica napus HOM05D004362 ORTHO05D005650 9.1e-83 310.5 188 76.6
BraA01t02085Z Brassica rapa HOM05D004362 ORTHO05D005650 9.1e-83 310.5 188 76.6
BraA03t14033Z Brassica rapa HOM05D004362 ORTHO05D005650 9.1e-83 310.5 188 76.6
CsaV3_3G014560 Cucumis sativus L. HOM05D004362 ORTHO05D005650 9.1e-83 310.5 188 76.1
CARHR290260 Cardamine hirsuta HOM05D004362 ORTHO05D005650 1.2e-82 310.1 188 76.6
Thecc.04G283400 Theobroma cacao HOM05D004362 ORTHO05D005650 1.6e-82 309.7 186 75.8
Cfa015376 Carpinus fangiana HOM05D004362 ORTHO05D005650 2.0e-82 309.3 188 77.7
AL7G39540 Arabidopsis lyrata HOM05D004362 ORTHO05D005650 2.6e-82 308.9 188 76.6
AT4G15770 Arabidopsis thaliana HOM05D004362 ORTHO05D005650 2.6e-82 308.9 188 76.6
Sed0020990 Sechium edule HOM05D004362 ORTHO05D005650 2.6e-82 308.9 188 75.0
Duzib052G0564 Durio zibethinus HOM05D004362 ORTHO05D005650 3.5e-82 308.5 186 75.8
Glyma.05G031500 Glycine max HOM05D004362 ORTHO05D005650 3.5e-82 308.5 188 74.5
Glyma.17G095400 Glycine max HOM05D004362 ORTHO05D005650 3.5e-82 308.5 188 74.5
Duzib212G1021 Durio zibethinus HOM05D004362 ORTHO05D005650 4.5e-82 308.1 186 75.8
Medtr3g112090 Medicago truncatula HOM05D004362 ORTHO05D005650 4.5e-82 308.1 188 75.5
BcaC06g32960 Brassica carinata HOM05D004362 ORTHO05D005650 5.9e-82 307.8 188 76.1
BcaC06g32963 Brassica carinata HOM05D004362 ORTHO05D005650 5.9e-82 307.8 188 76.1
C07p47390 Brassica napus HOM05D004362 ORTHO05D005650 5.9e-82 307.8 188 76.1
BolC7t45266H Brassica oleracea HOM05D004362 ORTHO05D005650 5.9e-82 307.8 188 76.1
Haze_01219 Corylus avellana HOM05D004362 ORTHO05D005650 5.9e-82 307.8 188 77.1
Gohir.D01G023472 Gossypium hirsutum HOM05D004362 ORTHO05D005650 5.9e-82 307.8 186 74.7
Gorai.002G028000 Gossypium raimondii HOM05D004362 ORTHO05D005650 5.9e-82 307.8 186 74.7
BcaC07g37931 Brassica carinata HOM05D004362 ORTHO05D005650 7.7e-82 307.4 188 76.1
A08p11960 Brassica napus HOM05D004362 ORTHO05D005650 7.7e-82 307.4 188 76.1
BraA08t33187Z Brassica rapa HOM05D004362 ORTHO05D005650 7.7e-82 307.4 188 76.1
Sed0024198 Sechium edule HOM05D004362 ORTHO05D005650 7.7e-82 307.4 188 75.5
TPR.G3221 Trifolium pratense HOM05D004362 ORTHO05D005650 7.7e-82 307.4 188 75.0
arahy.Tifrunner.gnm1.ann1.F4LE79 Arachis hypogaea HOM05D004362 ORTHO05D005650 1.0e-81 307.0 188 75.0
BcaC09g50269 Brassica carinata HOM05D004362 ORTHO05D005650 1.3e-81 306.6 190 76.8
C01p27110 Brassica napus HOM05D004362 ORTHO05D005650 1.3e-81 306.6 190 76.8
Gohir.A01G031201 Gossypium hirsutum HOM05D004362 ORTHO05D005650 1.7e-81 306.2 186 74.7
Lj6P674T13 Lonicera japonica HOM05D004362 ORTHO05D005650 2.2e-81 305.8 188 75.5
HPP92_025218 Vanilla planifolia HOM05D004362 ORTHO05D005650 2.2e-81 305.8 188 75.0
TPR.G12330 Trifolium pratense HOM05D004362 ORTHO05D005650 6.5e-81 304.3 188 74.5
Dinv29769 Davidia involucrata HOM05D004362 ORTHO05D005650 8.5e-81 303.9 180 77.8
FAN12G1395 Fragaria x ananassa HOM05D002675 ORTHO05D003322 1.1e-80 303.5 179 78.2
Lj6g0015098 Lotus japonicus HOM05D004362 ORTHO05D005650 1.5e-80 303.1 188 73.9
BolC8t48316H Brassica oleracea HOM05D004362 ORTHO05D005650 1.9e-80 302.8 188 73.9
Mapoly0063s0083 Marchantia polymorpha HOM05D004362 ORTHO05D005650 1.9e-80 302.8 188 74.5
Manes.15G013200 Manihot esculenta HOM05D004362 ORTHO05D005650 2.5e-80 302.4 188 74.5
Oeu027731.1 Olea europaea HOM05D004362 ORTHO05D005650 2.5e-80 302.4 189 76.7
TWI53G0131 Tripterygium wilfordii HOM05D004362 ORTHO05D005650 5.5e-80 301.2 188 75.0
Ca_21528_v3 Cicer arietinum L. HOM05D004362 ORTHO05D005650 7.2e-80 300.8 188 72.3
Migut.G00171 Erythranthe guttata HOM05D004362 ORTHO05D005650 7.2e-80 300.8 189 76.7
Lalb_Chr07g0177681 Lupinus albus HOM05D004362 ORTHO05D005650 7.2e-80 300.8 188 72.3
Eucgr.L03020 Eucalyptus grandis HOM05D004362 ORTHO05D005650 9.4e-80 300.4 188 73.4
HanXRQChr05g0151141 Helianthus annuus HOM05D004362 ORTHO05D005650 2.7e-79 298.9 188 74.5
HanXRQChr15g0467261 Helianthus annuus HOM05D004362 ORTHO05D005650 2.7e-79 298.9 188 74.5
SalBow2G1272 Salvia bowleyana HOM05D004362 ORTHO05D005650 3.6e-79 298.5 189 75.7
Psat7g055160 Pisum sativum HOM05D004362 ORTHO05D005650 4.7e-79 298.1 188 73.9
PGR031G1479 Punica granatum HOM05D004362 ORTHO05D005650 8.0e-79 297.4 188 72.9
Lsat_1_v5_gn_7_66041 Lactuca sativa HOM05D004362 ORTHO05D005650 1.8e-78 296.2 188 72.9
unitig_88.g27714 Utricularia gibba HOM05D004362 ORTHO05D005650 2.3e-78 295.8 189 75.1
AagrBONN_evm.TU.Sc2ySwM_228.5155 Anthoceros agrestis HOM05D004362 ORTHO05D005650 3.0e-78 295.4 188 72.9
MSTRG.3927 Avicennia marina HOM05D004362 ORTHO05D005650 5.2e-78 294.7 189 75.1
ECA246G2248 Erigeron canadensis HOM05D004362 ORTHO05D005650 5.2e-78 294.7 188 71.8
SMO361G0267 Selaginella moellendorffii HOM05D004362 ORTHO05D005650 1.2e-77 293.5 188 74.5
SMO361G0579 Selaginella moellendorffii HOM05D004362 ORTHO05D005650 1.2e-77 293.5 188 74.5
CBR_g101 Chara braunii HOM05D004362 ORTHO05D005650 3.3e-77 292.0 189 71.4
SGA_v2.0_scaffold166G38354 Striga asiatica HOM05D004362 ORTHO05D005650 4.4e-77 291.6 189 74.1
SHI00272 Sapria himalayana HOM05D004362 ORTHO05D005650 1.3e-76 290.0 188 71.3
SGA_v2.0_scaffold67G22647 Striga asiatica HOM05D004362 ORTHO05D005650 1.7e-76 289.7 188 72.9
Potri.010G024400 Populus trichocarpa HOM05D004362 ORTHO05D005650 6.3e-76 287.7 188 70.7
Sabra10G0014700 Salix brachista HOM05D004362 ORTHO05D005650 2.4e-75 285.8 188 69.7
Potri.008G209600 Populus trichocarpa HOM05D004362 ORTHO05D005650 9.1e-75 283.9 188 70.2
BcaB04g18325 Brassica carinata HOM05D004362 ORTHO05D005650 5.9e-74 281.2 188 72.3
FAN02G1421 Fragaria x ananassa HOM05D004362 ORTHO05D005650 7.7e-74 280.8 174 75.3
SEGI_14868 Sequoiadendron giganteum HOM05D004362 ORTHO05D005650 2.2e-73 279.3 188 77.7
Ah.05g167830 Amaranthus hybridus HOM05D004362 ORTHO05D005650 2.9e-73 278.9 188 70.2
Sc19g0005120 Simmondsia chinensis HOM05D004362 ORTHO05D005650 3.2e-72 275.4 188 70.7
arahy.Tifrunner.gnm1.ann1.U4RKM8 Arachis hypogaea HOM05D004362 ORTHO05D005650 1.2e-71 273.5 169 73.4
MCO05G615 Micromonas commoda HOM05D004362 ORTHO05D005650 8.0e-71 270.8 187 67.9
EL10Ac1g01907 Beta vulgaris HOM05D004362 ORTHO05D005650 8.8e-70 267.3 190 67.4
AUR62010283 Chenopodium quinoa HOM05D004362 ORTHO05D005650 8.8e-70 267.3 190 67.4
Lalb_Chr13g0303661 Lupinus albus HOM05D004362 ORTHO05D005650 7.5e-69 264.2 188 66.5
Cre12.g528900 Chlamydomonas reinhardtii HOM05D004362 ORTHO05D005650 1.7e-68 263.1 188 64.9
Os07g0670600 Oryza sativa ssp. japonica HOM05D004362 ORTHO05D005650 1.7e-68 263.1 187 64.2
Zm00001eb257450 Zea mays HOM05D004362 ORTHO05D005650 1.8e-67 259.6 187 62.6
Dinv44388 Davidia involucrata HOM05D004362 ORTHO05D005650 9.1e-67 257.3 188 67.0
GSVIVG01017749001 Vitis vinifera HOM05D004362 ORTHO05D005650 1.0e-65 253.8 188 67.0
GSVIVG01038238001 Vitis vinifera HOM05D004362 ORTHO05D005650 1.0e-65 253.8 188 67.0
PRCOL_00000387 Prasinoderma coloniale HOM05D004362 ORTHO05D005650 2.9e-65 252.3 177 65.5
EL10Ac1g01881 Beta vulgaris HOM05D004362 ORTHO05D005650 2.1e-63 246.1 179 65.4
AUR62039106 Chenopodium quinoa HOM05D004362 ORTHO05D005650 3.6e-63 245.4 179 64.8
BcaC06g33449 Brassica carinata HOM05D004362 ORTHO05D005650 4.0e-62 241.9 177 65.0
Psat0s12239g0040 Pisum sativum HOM05D004362 ORTHO05D005650 8.3e-60 234.2 181 63.0
SEGI_29823 Sequoiadendron giganteum HOM05D004362 ORTHO05D000001 9.5e-56 220.7 127 84.3
Prupe.7G009000 Prunus persica HOM05D004362 ORTHO05D005650 1.6e-55 219.9 165 65.5
Haze_26515 Corylus avellana HOM05D004362 ORTHO05D005650 7.5e-53 211.1 187 52.9
Oeu027660.1 Olea europaea HOM05D004362 ORTHO05D005650 5.4e-43 178.3 115 71.3
Psat5g016440 Pisum sativum HOM05D004362 ORTHO05D005650 9.2e-43 177.6 121 68.6
Psat7g055200 Pisum sativum HOM05D004362 ORTHO05D005650 5.6e-40 168.3 109 71.6
Eucgr.C01884 Eucalyptus grandis HOM05D004362 ORTHO05D191638 4.7e-39 165.2 123 66.7
FAN14G4293 Fragaria x ananassa HOM05D004362 ORTHO05D005650 6.2e-39 164.9 188 50.5
FAN05G2426 Fragaria x ananassa HOM05D004362 ORTHO05D005650 6.8e-38 161.4 173 53.2
Actinidia40262 Actinidia chinensis HOM05D004362 ORTHO05D005650 5.4e-35 151.8 85 77.6
TPR.G35112 Trifolium pratense HOM05D004362 ORTHO05D005650 6.0e-26 121.7 78 67.9
Psat4g036040 Pisum sativum HOM05D004362 ORTHO05D327968 3.4e-21 105.9 64 73.4
BcaC02g09747 Brassica carinata HOM05D004362 ORTHO05D094801 9.9e-21 104.4 91 56.0
Prupe.7G008800 Prunus persica HOM05D004362 ORTHO05D334194 7.9e-10 68.2 35 88.6
EL10Ac2g03799 Beta vulgaris HOM05D004362 ORTHO05D090253 8.1e-07 58.2 39 69.2
Cfa022336 Carpinus fangiana HOM05D004362 ORTHO05D122733 3.1e-06 56.2 75 40.0


User provided reference genes

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