Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SEGI_37042 Sequoiadendron giganteum HOM05D003431 ORTHO05D005152 1.0e-93 346.7 172 100.0
Nitab4.5_0010140g0020 Nicotiana tabacum HOM05D003431 ORTHO05D005152 3.2e-34 149.1 127 57.5
Glyma.08G184300 Glycine max HOM05D003431 ORTHO05D005152 4.2e-34 148.7 124 59.7
Pp3c11_25500 Physcomitrium patens HOM05D003431 ORTHO05D005152 4.2e-34 148.7 115 64.3
PSO339G0293 Papaver somniferum HOM05D003431 ORTHO05D005152 9.3e-34 147.5 108 65.7
PSO801G0645 Papaver somniferum HOM05D003431 ORTHO05D005152 9.3e-34 147.5 108 65.7
Sc11g0006640 Simmondsia chinensis HOM05D003431 ORTHO05D005152 9.3e-34 147.5 131 55.7
CANSAT11G1865 Cannabis sativa HOM05D003431 ORTHO05D005152 1.2e-33 147.1 117 59.8
Duzib132G0664 Durio zibethinus HOM05D003431 ORTHO05D005152 1.2e-33 147.1 133 54.1
Phvul.006G212200 Phaseolus vulgaris HOM05D003431 ORTHO05D005152 1.6e-33 146.7 118 61.9
Potri.011G156300 Populus trichocarpa HOM05D003431 ORTHO05D005152 1.6e-33 146.7 128 54.7
Sabra11G0143500 Salix brachista HOM05D003431 ORTHO05D005152 1.6e-33 146.7 128 53.9
DCAR_013995 Daucus carota HOM05D003431 ORTHO05D005152 2.1e-33 146.4 108 64.8
Dinv24261 Davidia involucrata HOM05D003431 ORTHO05D005152 2.1e-33 146.4 120 59.2
Nitab4.5_0005539g0060 Nicotiana tabacum HOM05D003431 ORTHO05D005152 2.1e-33 146.4 95 66.3
Lj9A308T36 Lonicera japonica HOM05D003431 ORTHO05D005152 2.7e-33 146.0 101 69.3
Lalb_Chr18g0060821 Lupinus albus HOM05D003431 ORTHO05D005152 2.7e-33 146.0 114 63.2
Os12g0105200 Oryza sativa ssp. japonica HOM05D003431 ORTHO05D005152 2.7e-33 146.0 124 59.7
QL02p098641 Quercus lobata HOM05D003431 ORTHO05D005152 2.7e-33 146.0 130 58.5
unitig_22.g6119 Utricularia gibba HOM05D003431 ORTHO05D005152 2.7e-33 146.0 92 70.7
Manes.10G132200 Manihot esculenta HOM05D003431 ORTHO05D005152 3.5e-33 145.6 126 54.8
TAR633G0411 Trochodendron aralioides HOM05D003431 ORTHO05D005152 3.5e-33 145.6 125 59.2
arahy.Tifrunner.gnm1.ann1.I5HCXG Arachis hypogaea HOM05D003431 ORTHO05D005152 4.6e-33 145.2 118 59.3
CDE12G0598 Ceratophyllum demersum HOM05D003431 ORTHO05D005152 4.6e-33 145.2 121 60.3
Glyma.15G048200 Glycine max HOM05D003431 ORTHO05D005152 4.6e-33 145.2 128 56.2
Os11g0105400 Oryza sativa ssp. japonica HOM05D003431 ORTHO05D005152 4.6e-33 145.2 124 58.9
Sopen01g046970 Solanum pennellii HOM05D003431 ORTHO05D005152 4.6e-33 145.2 127 55.9
PGSC0003DMG400023745 Solanum tuberosum HOM05D003431 ORTHO05D005152 4.6e-33 145.2 127 55.9
TWI14G0641 Tripterygium wilfordii HOM05D003431 ORTHO05D005152 4.6e-33 145.2 134 53.7
TWI23G0077 Tripterygium wilfordii HOM05D003431 ORTHO05D005152 4.6e-33 145.2 132 54.5
TAR636G0765 Trochodendron aralioides HOM05D003431 ORTHO05D005152 4.6e-33 145.2 125 59.2
Zm00001eb094240 Zea mays HOM05D003431 ORTHO05D005152 4.6e-33 145.2 100 68.0
Actinidia39056 Actinidia chinensis HOM05D003431 ORTHO05D005152 6.0e-33 144.8 116 58.6
ATR0174G027 Amborella trichopoda HOM05D003431 ORTHO05D005152 6.0e-33 144.8 84 77.4
CAN.G1352.24 Capsicum annuum HOM05D003431 ORTHO05D005152 7.9e-33 144.4 95 66.3
GSVIVG01023018001 Vitis vinifera HOM05D003431 ORTHO05D005152 1.0e-32 144.1 121 57.9
Solyc01g104470.3 Solanum lycopersicum HOM05D003431 ORTHO05D005152 1.3e-32 143.7 127 55.9
CSS0006665 Camellia sinensis var. sinensis HOM05D003431 ORTHO05D005152 1.8e-32 143.3 120 55.8
Cfa014508 Carpinus fangiana HOM05D003431 ORTHO05D005152 1.8e-32 143.3 130 58.5
Haze_13054 Corylus avellana HOM05D003431 ORTHO05D005152 1.8e-32 143.3 127 58.3
VMungo0540G2199 Vigna mungo HOM05D003431 ORTHO05D005152 1.8e-32 143.3 124 57.3
Zm00001eb163260 Zea mays HOM05D003431 ORTHO05D005152 1.8e-32 143.3 100 67.0
MSTRG.16533 Avicennia marina HOM05D003431 ORTHO05D005152 2.3e-32 142.9 120 57.5
Atru.chr6.1030 Acer truncatum HOM05D003431 ORTHO05D005152 3.0e-32 142.5 128 51.6
Atru.chr6.1079 Acer truncatum HOM05D003431 ORTHO05D005152 3.0e-32 142.5 128 51.6
Duzib248G1379 Durio zibethinus HOM05D003431 ORTHO05D005152 3.0e-32 142.5 133 51.9
Gohir.D01G167700 Gossypium hirsutum HOM05D003431 ORTHO05D005152 3.0e-32 142.5 113 59.3
BcaC05g26486 Brassica carinata HOM05D003431 ORTHO05D005152 3.9e-32 142.1 125 56.0
Ciclev10002376m.g Citrus clementina HOM05D003431 ORTHO05D005152 3.9e-32 142.1 130 52.3
Lj6g0011327 Lotus japonicus HOM05D003431 ORTHO05D005152 3.9e-32 142.1 115 57.4
Manes.07G013300 Manihot esculenta HOM05D003431 ORTHO05D005152 3.9e-32 142.1 125 58.4
BcaC06g35235 Brassica carinata HOM05D003431 ORTHO05D005152 5.1e-32 141.7 125 56.8
C07p18390 Brassica napus HOM05D003431 ORTHO05D005152 5.1e-32 141.7 125 56.8
Cpa.g.sc2.27 Carica papaya HOM05D003431 ORTHO05D005152 5.1e-32 141.7 115 58.3
Thhalv10008680m.g Eutrema salsugineum HOM05D003431 ORTHO05D005152 5.1e-32 141.7 114 58.8
HanXRQChr01g0021831 Helianthus annuus HOM05D003431 ORTHO05D005152 5.1e-32 141.7 126 54.8
PSO017G6291 Papaver somniferum HOM05D003431 ORTHO05D005152 5.1e-32 141.7 108 65.7
PSO170G4153 Papaver somniferum HOM05D003431 ORTHO05D005152 5.1e-32 141.7 108 65.7
BcaB03g12039 Brassica carinata HOM05D003431 ORTHO05D005152 6.7e-32 141.4 125 56.0
BcaB03g14023 Brassica carinata HOM05D003431 ORTHO05D005152 6.7e-32 141.4 125 56.0
BcaC05g26690 Brassica carinata HOM05D003431 ORTHO05D005152 6.7e-32 141.4 125 56.0
A07p12440 Brassica napus HOM05D003431 ORTHO05D005152 6.7e-32 141.4 125 56.0
A09p39090 Brassica napus HOM05D003431 ORTHO05D005152 6.7e-32 141.4 125 56.0
C03p73140 Brassica napus HOM05D003431 ORTHO05D005152 6.7e-32 141.4 114 57.9
C05p25340 Brassica napus HOM05D003431 ORTHO05D005152 6.7e-32 141.4 125 56.0
BraA07t29025Z Brassica rapa HOM05D003431 ORTHO05D005152 6.7e-32 141.4 125 56.0
BraA09t39409Z Brassica rapa HOM05D003431 ORTHO05D005152 6.7e-32 141.4 125 56.0
Eucgr.I02710 Eucalyptus grandis HOM05D003431 ORTHO05D005152 6.7e-32 141.4 120 59.2
Gorai.002G208400 Gossypium raimondii HOM05D003431 ORTHO05D005152 6.7e-32 141.4 113 59.3
Pp3s128_30 Physcomitrium patens HOM05D003431 ORTHO05D005152 6.7e-32 141.4 183 48.1
RcHm_v2.0_Chr7g0224251 Rosa chinensis HOM05D003431 ORTHO05D005152 6.7e-32 141.4 107 63.6
vmacro01777 Vaccinium macrocarpon HOM05D003431 ORTHO05D005152 6.7e-32 141.4 103 64.1
BcaC01g01674 Brassica carinata HOM05D003431 ORTHO05D005152 8.7e-32 141.0 114 57.9
A08p26810 Brassica napus HOM05D003431 ORTHO05D005152 8.7e-32 141.0 114 57.9
BolC3t19610H Brassica oleracea HOM05D003431 ORTHO05D005152 8.7e-32 141.0 114 57.9
Migut.B00667 Erythranthe guttata HOM05D003431 ORTHO05D005152 8.7e-32 141.0 115 57.4
Hma1.2p1_0557F.1_g178330 Hydrangea macrophylla HOM05D003431 ORTHO05D005152 8.7e-32 141.0 103 64.1
Hma1.2p1_0557F.1_g178340 Hydrangea macrophylla HOM05D003431 ORTHO05D005152 8.7e-32 141.0 103 64.1
Hma1.2p1_2850F.1_g329406 Hydrangea macrophylla HOM05D003431 ORTHO05D005152 8.7e-32 141.0 103 64.1
SMO367G0584 Selaginella moellendorffii HOM05D003431 ORTHO05D005152 8.7e-32 141.0 145 52.4
BraA08t34627Z Brassica rapa HOM05D003431 ORTHO05D005152 1.1e-31 140.6 131 54.2
ECA236G3864 Erigeron canadensis HOM05D003431 ORTHO05D005152 1.1e-31 140.6 126 55.6
HanXRQChr03g0066511 Helianthus annuus HOM05D003431 ORTHO05D005152 1.1e-31 140.6 83 74.7
Sp1g23030 Schrenkiella parvula HOM05D003431 ORTHO05D005152 1.1e-31 140.6 125 56.0
Aqoxy4G02442 Aquilegia oxysepala HOM05D003431 ORTHO05D005152 1.5e-31 140.2 83 77.1
MBI15_g28822_MAGBIO Magnolia biondii HOM05D003431 ORTHO05D005152 1.5e-31 140.2 84 73.8
Peaxi162Scf00011g00014 Petunia axillaris HOM05D003431 ORTHO05D005152 1.5e-31 140.2 108 59.3
PGR142G4046 Punica granatum HOM05D003431 ORTHO05D005152 1.5e-31 140.2 120 60.0
TPR.G39937 Trifolium pratense HOM05D003431 ORTHO05D005152 1.5e-31 140.2 111 62.2
AagrBONN_evm.TU.Sc2ySwM_369.396 Anthoceros agrestis HOM05D003431 ORTHO05D005152 1.9e-31 139.8 117 59.0
MD08G1225200 Malus domestica HOM05D003431 ORTHO05D005152 1.9e-31 139.8 107 62.6
Thecc.02G041300 Theobroma cacao HOM05D003431 ORTHO05D005152 1.9e-31 139.8 131 52.7
Prupe.1G562900 Prunus persica HOM05D003431 ORTHO05D005152 2.5e-31 139.4 155 51.0
SGA_v2.0_scaffold1G00326 Striga asiatica HOM05D003431 ORTHO05D005152 2.5e-31 139.4 120 55.8
Lsat_1_v5_gn_7_77981 Lactuca sativa HOM05D003431 ORTHO05D005152 3.3e-31 139.0 114 58.8
Potri.001G460100 Populus trichocarpa HOM05D003431 ORTHO05D005152 3.3e-31 139.0 126 54.0
CiPaw.05G042700 Carya illinoinensis HOM05D003431 ORTHO05D005152 4.3e-31 138.7 117 59.0
Ca_00090_v3 Cicer arietinum L. HOM05D003431 ORTHO05D005152 4.3e-31 138.7 128 57.8
Ca_29929_v3 Cicer arietinum L. HOM05D003431 ORTHO05D005152 4.3e-31 138.7 128 57.8
Hma1.2p1_0217F.1_g091920 Hydrangea macrophylla HOM05D003431 ORTHO05D005152 4.3e-31 138.7 108 61.1
BolC5t31269H Brassica oleracea HOM05D003431 ORTHO05D005152 5.7e-31 138.3 125 55.2
Gohir.A01G176900 Gossypium hirsutum HOM05D003431 ORTHO05D005152 5.7e-31 138.3 101 63.4
Psat1g220040 Pisum sativum HOM05D003431 ORTHO05D005152 5.7e-31 138.3 112 59.8
Sabra16G0311800 Salix brachista HOM05D003431 ORTHO05D005152 5.7e-31 138.3 114 58.8
MD15G1418800 Malus domestica HOM05D003431 ORTHO05D005152 7.4e-31 137.9 107 61.7
Oeu000195.1 Olea europaea HOM05D003431 ORTHO05D005152 7.4e-31 137.9 120 53.3
THA.LOC104807949 Tarenaya hassleriana HOM05D003431 ORTHO05D005152 1.3e-30 137.1 124 53.2
Mapoly0015s0017 Marchantia polymorpha HOM05D003431 ORTHO05D005152 1.6e-30 136.7 126 57.1
SalBow6G0908 Salvia bowleyana HOM05D003431 ORTHO05D005152 1.6e-30 136.7 133 51.1
Cc02_g22270 Coffea canephora HOM05D003431 ORTHO05D005152 2.8e-30 136.0 120 55.0
FAN08G2387 Fragaria x ananassa HOM05D003431 ORTHO05D005152 2.8e-30 136.0 107 60.7
FAN13G1098 Fragaria x ananassa HOM05D003431 ORTHO05D005152 2.8e-30 136.0 107 60.7
Aa31LG7G9280 Aethionema arabicum HOM05D003431 ORTHO05D005152 3.7e-30 135.6 125 53.6
AUR62020868 Chenopodium quinoa HOM05D003431 ORTHO05D005152 1.8e-29 133.3 120 55.0
AL1G40100 Arabidopsis lyrata HOM05D003431 ORTHO05D005152 3.1e-29 132.5 114 55.3
Medtr2g007780 Medicago truncatula HOM05D003431 ORTHO05D005152 4.1e-29 132.1 115 60.0
Rhsim11G0131700 Rhododendron simsii HOM05D003431 ORTHO05D005152 4.1e-29 132.1 83 69.9
Sed0006026 Sechium edule HOM05D003431 ORTHO05D005152 4.1e-29 132.1 95 62.1
CARHR026300 Cardamine hirsuta HOM05D003431 ORTHO05D005152 6.9e-29 131.3 114 55.3
AUR62018551 Chenopodium quinoa HOM05D003431 ORTHO05D005152 6.9e-29 131.3 120 55.0
Hund24426 Selenicereus undatus HOM05D003431 ORTHO05D005152 6.9e-29 131.3 123 53.7
CiPaw.06G149000 Carya illinoinensis HOM05D003431 ORTHO05D005152 9.0e-29 131.0 112 56.2
HPP92_015419 Vanilla planifolia HOM05D003431 ORTHO05D005152 1.2e-28 130.6 116 53.4
HPP92_026977 Vanilla planifolia HOM05D003431 ORTHO05D005152 1.2e-28 130.6 116 53.4
AT1G25260 Arabidopsis thaliana HOM05D003431 ORTHO05D005152 1.5e-28 130.2 114 55.3
Sed0002836 Sechium edule HOM05D003431 ORTHO05D005152 7.6e-28 127.9 82 68.3
CBR_g26270 Chara braunii HOM05D003431 ORTHO05D005152 1.0e-27 127.5 160 46.9
MELO3C023261.2 Cucumis melo HOM05D003431 ORTHO05D005152 1.0e-27 127.5 93 62.4
EL10Ac3g07449 Beta vulgaris HOM05D003431 ORTHO05D005152 1.7e-27 126.7 108 57.4
ClCG02G000650 Citrullus lanatus HOM05D003431 ORTHO05D005152 2.2e-27 126.3 95 58.9
Ah.04g149460 Amaranthus hybridus HOM05D003431 ORTHO05D005152 8.5e-27 124.4 114 54.4
Carub.0001s2531 Capsella rubella HOM05D003431 ORTHO05D005152 1.1e-26 124.0 114 52.6
BolC7t42349H Brassica oleracea HOM05D003431 ORTHO05D005152 1.4e-26 123.6 131 50.4
CsaV3_2G018120 Cucumis sativus L. HOM05D003431 ORTHO05D005152 7.2e-26 121.3 118 50.8
COL.COLO4_17896 Corchorus olitorius HOM05D003431 ORTHO05D005152 2.1e-25 119.8 81 64.2
Lsat_1_v5_gn_9_116360 Lactuca sativa HOM05D003431 ORTHO05D005152 4.6e-25 118.6 99 58.6
Nn2g13208 Nelumbo nucifera HOM05D003431 ORTHO05D005152 7.4e-23 111.3 89 60.7
arahy.Tifrunner.gnm1.ann1.N8P1ZJ Arachis hypogaea HOM05D003431 ORTHO05D005152 2.8e-22 109.4 94 58.5
Dinv19351 Davidia involucrata HOM05D003431 ORTHO05D005152 8.2e-22 107.8 72 66.7
CDE06G1320 Ceratophyllum demersum HOM05D003431 ORTHO05D005152 3.1e-21 105.9 81 63.0
FvH4_5g30060 Fragaria vesca HOM05D003431 ORTHO05D005152 6.9e-21 104.8 83 60.2
FAN04G1904 Fragaria x ananassa HOM05D003431 ORTHO05D005152 1.2e-20 104.0 95 53.7
FAN18G1423 Fragaria x ananassa HOM05D003431 ORTHO05D005152 3.4e-20 102.4 81 60.5
HanXRQChr10g0305141 Helianthus annuus HOM05D003431 ORTHO05D005152 1.0e-19 100.9 56 82.1
SHI16687 Sapria himalayana HOM05D003431 ORTHO05D005152 1.6e-17 93.6 107 49.5
MCO04G167 Micromonas commoda HOM05D003431 ORTHO05D005152 1.7e-14 83.6 112 39.3
PRCOL_00006634 Prasinoderma coloniale HOM05D003431 ORTHO05D005152 1.7e-14 83.6 107 36.4
Zm00001eb026620 Zea mays HOM05D003431 ORTHO05D005152 3.7e-14 82.4 82 56.1
BolC5t29949H Brassica oleracea HOM05D003431 ORTHO05D005152 2.6e-12 76.3 60 65.0
EL10Ac8g19160 Beta vulgaris HOM05D003431 ORTHO05D005152 1.7e-11 73.6 41 78.0
Cre06.g261700 Chlamydomonas reinhardtii HOM05D003431 ORTHO05D005152 1.7e-11 73.6 73 43.8
Zm00001eb078820 Zea mays HOM05D003431 ORTHO05D005152 2.2e-11 73.2 76 55.3
Oeu026055.1 Olea europaea HOM05D003431 ORTHO05D005152 6.1e-09 65.1 54 61.1
TAR636G2181 Trochodendron aralioides HOM05D003431 ORTHO05D005152 6.7e-08 61.6 50 64.0
Cfa023894 Carpinus fangiana HOM05D003431 ORTHO05D005152 8.8e-08 61.2 69 37.7
SGA_v2.0_scaffold110G31286 Striga asiatica HOM05D003431 ORTHO05D005152 1.7e-06 57.0 44 56.8
BcaC08g45659 Brassica carinata HOM05D003431 ORTHO05D014368 2.8e-06 56.2 62 51.6


User provided reference genes

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