Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SEGI_36936 Sequoiadendron giganteum HOM05D005626 ORTHO05D007372 2.7e-92 342.0 177 100.0
MBI07_g43862_MAGBIO Magnolia biondii HOM05D005626 ORTHO05D007372 4.2e-29 132.1 200 38.5
QL09p008055 Quercus lobata HOM05D005626 ORTHO05D007372 3.9e-27 125.6 150 44.7
CSS0003989 Camellia sinensis var. sinensis HOM05D005626 ORTHO05D007372 1.4e-21 107.1 125 44.0
Pp3c5_16230 Physcomitrium patens HOM05D005626 ORTHO05D007372 4.6e-20 102.1 152 38.8
CSS0000100 Camellia sinensis var. sinensis HOM05D005626 ORTHO05D007372 6.7e-19 98.2 123 43.1
THA.LOC104799967 Tarenaya hassleriana HOM05D005626 ORTHO05D007372 1.9e-18 96.7 191 32.5
BcaB05g22010 Brassica carinata HOM05D005626 ORTHO05D007372 3.3e-18 95.9 130 40.8
AUR62035551 Chenopodium quinoa HOM05D005626 ORTHO05D007372 4.3e-18 95.5 150 34.7
DCAR_010593 Daucus carota HOM05D005626 ORTHO05D007372 3.7e-17 92.4 109 44.0
Manes.06G011750 Manihot esculenta HOM05D005626 ORTHO05D007372 3.7e-17 92.4 176 32.4
Manes.06G012351 Manihot esculenta HOM05D005626 ORTHO05D007372 3.7e-17 92.4 191 31.4
Cfa016215 Carpinus fangiana HOM05D005626 ORTHO05D007372 1.4e-16 90.5 191 30.9
CDE02G3804 Ceratophyllum demersum HOM05D005626 ORTHO05D007372 1.8e-16 90.1 189 31.2
Cc02_g01370 Coffea canephora HOM05D005626 ORTHO05D007372 2.4e-16 89.7 156 34.6
Manes.06G011400 Manihot esculenta HOM05D005626 ORTHO05D007372 3.1e-16 89.4 191 30.9
Pp3c16_9300 Physcomitrium patens HOM05D005626 ORTHO05D007372 3.1e-16 89.4 144 33.3
Haze_00226 Corylus avellana HOM05D005626 ORTHO05D007372 6.9e-16 88.2 188 30.9
CANSAT21G0821 Cannabis sativa HOM05D005626 ORTHO05D007372 1.5e-15 87.0 188 30.9
Mapoly0001s0084 Marchantia polymorpha HOM05D005626 ORTHO05D007372 3.4e-15 85.9 151 37.1
Gorai.006G201900 Gossypium raimondii HOM05D005626 ORTHO05D007372 7.6e-15 84.7 80 53.8
arahy.Tifrunner.gnm1.ann1.1DU7LF Arachis hypogaea HOM05D005626 ORTHO05D007372 1.0e-14 84.3 156 32.1
Gohir.D09G179900 Gossypium hirsutum HOM05D005626 ORTHO05D007372 1.0e-14 84.3 191 31.9
arahy.Tifrunner.gnm1.ann1.DCMH6Q Arachis hypogaea HOM05D005626 ORTHO05D007372 1.3e-14 84.0 93 43.0
arahy.Tifrunner.gnm1.ann1.ULB6CG Arachis hypogaea HOM05D005626 ORTHO05D007372 1.3e-14 84.0 93 43.0
Gohir.A09G185000 Gossypium hirsutum HOM05D005626 ORTHO05D007372 1.3e-14 84.0 191 31.4
MBI07_g24765_MAGBIO Magnolia biondii HOM05D005626 ORTHO05D007372 5.0e-14 82.0 102 44.1
Prupe.2G313200 Prunus persica HOM05D005626 ORTHO05D007372 5.0e-14 82.0 84 47.6
arahy.Tifrunner.gnm1.ann1.CHU3M4 Arachis hypogaea HOM05D005626 ORTHO05D007372 6.5e-14 81.6 93 41.9
Atru.chr12.2245_Atru.chr12.2244 Acer truncatum HOM05D005626 ORTHO05D007372 8.4e-14 81.3 191 29.3
ATR0730G125 Amborella trichopoda HOM05D005626 ORTHO05D007372 8.4e-14 81.3 70 55.7
GSVIVG01038569001 Vitis vinifera HOM05D005626 ORTHO05D007372 8.4e-14 81.3 84 47.6
Nitab4.5_0005491g0050 Nicotiana tabacum HOM05D005626 ORTHO05D007372 1.1e-13 80.9 189 30.7
AUR62006074 Chenopodium quinoa HOM05D005626 ORTHO05D007372 5.5e-13 78.6 188 28.2
TWI39G0896 Tripterygium wilfordii HOM05D005626 ORTHO05D007372 5.5e-13 78.6 70 51.4
Hund11648 Selenicereus undatus HOM05D005626 ORTHO05D007372 1.6e-12 77.0 181 28.7
CAN.G481.28 Capsicum annuum HOM05D005626 ORTHO05D007372 2.1e-12 76.6 82 45.1
QL09p007984 Quercus lobata HOM05D005626 ORTHO05D007372 2.7e-12 76.3 70 50.0
Sc25g0000940 Simmondsia chinensis HOM05D005626 ORTHO05D007372 2.7e-12 76.3 188 28.7
SalBow4G1489 Salvia bowleyana HOM05D005626 ORTHO05D007372 3.5e-12 75.9 156 33.3
unitig_92.g28249 Utricularia gibba HOM05D005626 ORTHO05D007372 3.5e-12 75.9 87 44.8
HPP92_005288 Vanilla planifolia HOM05D005626 ORTHO05D007372 3.5e-12 75.9 77 50.6
Oeu010695.1 Olea europaea HOM05D005626 ORTHO05D007372 4.6e-12 75.5 68 52.9
PGR042G1168 Punica granatum HOM05D005626 ORTHO05D007372 7.9e-12 74.7 76 51.3
RcHm_v2.0_Chr1g0381501 Rosa chinensis HOM05D005626 ORTHO05D007372 1.3e-11 73.9 75 49.3
TAR375G0360 Trochodendron aralioides HOM05D005626 ORTHO05D007372 2.3e-11 73.2 66 51.5
Solyc03g082990.3 Solanum lycopersicum HOM05D005626 ORTHO05D007372 3.9e-11 72.4 70 50.0
Sopen03g022800 Solanum pennellii HOM05D005626 ORTHO05D007372 3.9e-11 72.4 70 50.0
Peaxi162Scf00740g00226 Petunia axillaris HOM05D005626 ORTHO05D007372 1.1e-10 70.9 189 29.1
MBI19_g14787_MAGBIO Magnolia biondii HOM05D005626 ORTHO05D007372 1.5e-10 70.5 57 56.1
Migut.F00199 Erythranthe guttata HOM05D005626 ORTHO05D007372 1.9e-10 70.1 66 51.5
FvH4_7g31990 Fragaria vesca HOM05D005626 ORTHO05D007372 1.3e-09 67.4 70 45.7
FAN06G4319 Fragaria x ananassa HOM05D005626 ORTHO05D007372 1.3e-09 67.4 70 45.7
CSS0044766 Camellia sinensis var. sinensis HOM05D005626 ORTHO05D007372 2.8e-09 66.2 70 44.3
MD01G1222800 Malus domestica HOM05D005626 ORTHO05D007372 2.8e-09 66.2 60 50.0
Psat5g076080 Pisum sativum HOM05D005626 ORTHO05D007372 2.8e-09 66.2 70 47.1
TPR.G33639 Trifolium pratense HOM05D005626 ORTHO05D007372 3.7e-09 65.9 75 45.3
Mapoly0045s0029 Marchantia polymorpha HOM05D005626 ORTHO05D007372 8.2e-09 64.7 82 40.2
CiPaw.06G045100 Carya illinoinensis HOM05D005626 ORTHO05D007372 4.1e-08 62.4 53 52.8
MSTRG.27018 Avicennia marina HOM05D005626 ORTHO05D007372 6.9e-08 61.6 52 55.8
Thecc.03G201200 Theobroma cacao HOM05D005626 ORTHO05D007372 9.0e-08 61.2 70 44.3
Aqoxy5G04311 Aquilegia oxysepala HOM05D005626 ORTHO05D007372 1.2e-07 60.8 51 52.9
Actinidia18659 Actinidia chinensis HOM05D005626 ORTHO05D007372 2.0e-07 60.1 60 43.3


User provided reference genes

Program Settings