Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SEGI_36865 Sequoiadendron giganteum HOM05D003612 ORTHO05D004323 1.8e-47 192.2 95 100.0
ATR0829G008 Amborella trichopoda HOM05D003612 ORTHO05D004323 3.0e-18 95.1 83 57.8
MBI16_g21161_MAGBIO Magnolia biondii HOM05D003612 ORTHO05D004323 9.8e-17 90.1 81 55.6
Solyc10g079310.2 Solanum lycopersicum HOM05D003612 ORTHO05D004323 3.1e-15 85.1 78 56.4
Sopen10g029960 Solanum pennellii HOM05D003612 ORTHO05D004323 3.1e-15 85.1 78 56.4
TAR369G0285 Trochodendron aralioides HOM05D003612 ORTHO05D004323 3.1e-15 85.1 78 55.1
Oeu008170.1 Olea europaea HOM05D003612 ORTHO05D004323 5.4e-15 84.3 82 52.4
Nn8g39441 Nelumbo nucifera HOM05D003612 ORTHO05D004323 9.1e-15 83.6 78 56.4
Oeu023123.1 Olea europaea HOM05D003612 ORTHO05D004323 9.1e-15 83.6 76 56.6
Manes.04G104200 Manihot esculenta HOM05D003612 ORTHO05D004323 1.2e-14 83.2 79 51.9
Ciclev10005938m.g Citrus clementina HOM05D003612 ORTHO05D004323 1.6e-14 82.8 77 53.2
CAN.G641.26 Capsicum annuum HOM05D003612 ORTHO05D004323 2.7e-14 82.0 78 55.1
Cc06_g17860 Coffea canephora HOM05D003612 ORTHO05D004323 3.5e-14 81.6 81 55.6
Nitab4.5_0004416g0060 Nicotiana tabacum HOM05D003612 ORTHO05D004323 4.5e-14 81.3 74 54.1
Nn2g10440 Nelumbo nucifera HOM05D003612 ORTHO05D004323 5.9e-14 80.9 78 56.4
Nitab4.5_0000082g0220 Nicotiana tabacum HOM05D003612 ORTHO05D004323 5.9e-14 80.9 78 55.1
SGA_v2.0_scaffold94G28492 Striga asiatica HOM05D003612 ORTHO05D004323 7.7e-14 80.5 96 43.8
Cc04_g15140 Coffea canephora HOM05D003612 ORTHO05D004323 1.0e-13 80.1 81 54.3
Actinidia22794 Actinidia chinensis HOM05D003612 ORTHO05D004323 1.3e-13 79.7 78 48.7
MSTRG.26129 Avicennia marina HOM05D003612 ORTHO05D004323 1.3e-13 79.7 74 54.1
Cpa.g.sc182.7 Carica papaya HOM05D003612 ORTHO05D004323 1.3e-13 79.7 81 49.4
Nitab4.5_0000082g0130 Nicotiana tabacum HOM05D003612 ORTHO05D004323 1.3e-13 79.7 82 52.4
PGSC0003DMG400013536 Solanum tuberosum HOM05D003612 ORTHO05D004323 1.7e-13 79.3 75 56.0
Migut.B00971 Erythranthe guttata HOM05D003612 ORTHO05D004323 2.3e-13 79.0 74 52.7
SGA_v2.0_scaffold1G00588 Striga asiatica HOM05D003612 ORTHO05D004323 2.3e-13 79.0 73 54.8
Lj2A386T88 Lonicera japonica HOM05D003612 ORTHO05D004323 2.9e-13 78.6 74 54.1
PGSC0003DMG400008168 Solanum tuberosum HOM05D003612 ORTHO05D004323 2.9e-13 78.6 78 52.6
Nitab4.5_0000912g0130 Nicotiana tabacum HOM05D003612 ORTHO05D004323 3.8e-13 78.2 74 52.7
Eucgr.A02322 Eucalyptus grandis HOM05D003612 ORTHO05D004323 5.0e-13 77.8 74 55.4
Eucgr.B02734 Eucalyptus grandis HOM05D003612 ORTHO05D004323 5.0e-13 77.8 74 54.1
Nn1g01643 Nelumbo nucifera HOM05D003612 ORTHO05D004323 5.0e-13 77.8 78 53.8
vmacro09060 Vaccinium macrocarpon HOM05D003612 ORTHO05D004323 5.0e-13 77.8 74 52.7
ClCG04G006280 Citrullus lanatus HOM05D003612 ORTHO05D004323 8.6e-13 77.0 74 50.0
SalBow1G2865 Salvia bowleyana HOM05D003612 ORTHO05D004323 8.6e-13 77.0 80 48.8
CSS0036075 Camellia sinensis var. sinensis HOM05D003612 ORTHO05D004323 3.2e-12 75.1 74 51.4
Dinv02797 Davidia involucrata HOM05D003612 ORTHO05D004323 3.2e-12 75.1 74 51.4
Dinv39651 Davidia involucrata HOM05D003612 ORTHO05D004323 3.2e-12 75.1 74 52.7
Rhsim04G0105800 Rhododendron simsii HOM05D003612 ORTHO05D004323 4.2e-12 74.7 74 51.4
GSVIVG01033242001 Vitis vinifera HOM05D003612 ORTHO05D004323 4.2e-12 74.7 79 49.4
Actinidia17229 Actinidia chinensis HOM05D003612 ORTHO05D004323 7.2e-12 73.9 68 51.5
PGR004G2683 Punica granatum HOM05D003612 ORTHO05D004323 7.2e-12 73.9 72 51.4
CsaV3_4G027280 Cucumis sativus L. HOM05D003612 ORTHO05D004323 9.5e-12 73.6 71 49.3
Migut.K00098 Erythranthe guttata HOM05D003612 ORTHO05D004323 9.5e-12 73.6 72 48.6
COL.COLO4_22302 Corchorus olitorius HOM05D003612 ORTHO05D004323 1.2e-11 73.2 78 48.7
MELO3C025231.2 Cucumis melo HOM05D003612 ORTHO05D004323 1.2e-11 73.2 92 44.6
Nitab4.5_0010316g0020 Nicotiana tabacum HOM05D003612 ORTHO05D004323 1.2e-11 73.2 78 51.3
Eucgr.A02319 Eucalyptus grandis HOM05D003612 ORTHO05D004323 2.1e-11 72.4 77 48.1
Gohir.A01G194000 Gossypium hirsutum HOM05D003612 ORTHO05D004323 2.8e-11 72.0 75 49.3
Gorai.002G227800 Gossypium raimondii HOM05D003612 ORTHO05D004323 2.8e-11 72.0 75 49.3
Hund23474 Selenicereus undatus HOM05D003612 ORTHO05D004323 2.8e-11 72.0 93 44.1
TWI53G1732 Tripterygium wilfordii HOM05D003612 ORTHO05D004323 3.6e-11 71.6 87 47.1
COL.COLO4_19254 Corchorus olitorius HOM05D003612 ORTHO05D004323 4.7e-11 71.2 78 46.2
TWI74G0690 Tripterygium wilfordii HOM05D003612 ORTHO05D004323 4.7e-11 71.2 88 44.3
SHI13547 Sapria himalayana HOM05D003612 ORTHO05D004323 6.1e-11 70.9 52 59.6
AagrBONN_evm.TU.Sc2ySwM_368.1563 Anthoceros agrestis HOM05D003612 ORTHO05D004323 8.0e-11 70.5 43 65.1
AL5G38900 Arabidopsis lyrata HOM05D003612 ORTHO05D004323 8.0e-11 70.5 81 46.9
Potri.017G142200 Populus trichocarpa HOM05D003612 ORTHO05D004323 8.0e-11 70.5 69 52.2
Sabra17G0119100 Salix brachista HOM05D003612 ORTHO05D004323 8.0e-11 70.5 54 59.3
Aqoxy7G03834 Aquilegia oxysepala HOM05D003612 ORTHO05D004323 2.3e-10 68.9 55 56.4
Carub.0005s2421 Capsella rubella HOM05D003612 ORTHO05D004323 2.3e-10 68.9 81 44.4
HPP92_020032 Vanilla planifolia HOM05D003612 ORTHO05D004323 2.3e-10 68.9 47 61.7
PSO210G3983 Papaver somniferum HOM05D003612 ORTHO05D004323 3.0e-10 68.6 82 47.6
MELO3C030712.2 Cucumis melo HOM05D003612 ORTHO05D004323 4.0e-10 68.2 74 43.2
AL3G11670 Arabidopsis lyrata HOM05D003612 ORTHO05D004323 5.2e-10 67.8 80 46.2
AT3G57360 Arabidopsis thaliana HOM05D003612 ORTHO05D004323 5.2e-10 67.8 81 44.4
PSO648G0079 Papaver somniferum HOM05D003612 ORTHO05D004323 5.2e-10 67.8 80 47.5
QL11p026785 Quercus lobata HOM05D003612 ORTHO05D004323 5.2e-10 67.8 85 44.7
Sp5g05240 Schrenkiella parvula HOM05D003612 ORTHO05D004323 5.2e-10 67.8 81 45.7
Sed0024079 Sechium edule HOM05D003612 ORTHO05D004323 5.2e-10 67.8 69 49.3
Aqoxy7G03372 Aquilegia oxysepala HOM05D003612 ORTHO05D004323 6.8e-10 67.4 54 53.7
ClCG10G015700 Citrullus lanatus HOM05D003612 ORTHO05D004323 6.8e-10 67.4 73 49.3
QL07p002913 Quercus lobata HOM05D003612 ORTHO05D004323 6.8e-10 67.4 75 46.7
Cfa016791 Carpinus fangiana HOM05D003612 ORTHO05D004323 8.8e-10 67.0 86 45.3
C04p35070 Brassica napus HOM05D003612 ORTHO05D004323 1.5e-09 66.2 87 41.4
BolC4t25063H Brassica oleracea HOM05D003612 ORTHO05D004323 1.5e-09 66.2 87 41.4
Carub.0001s3481 Capsella rubella HOM05D003612 ORTHO05D004323 2.0e-09 65.9 81 42.0
Haze_19817 Corylus avellana HOM05D003612 ORTHO05D004323 2.0e-09 65.9 90 41.1
Lj1g0003709 Lotus japonicus HOM05D003612 ORTHO05D004323 2.0e-09 65.9 77 48.1
Peaxi162Scf00059g01812 Petunia axillaris HOM05D003612 ORTHO05D004323 2.0e-09 65.9 81 46.9
unitig_52.g17667 Utricularia gibba HOM05D003612 ORTHO05D004323 2.0e-09 65.9 72 47.2
Haze_19820 Corylus avellana HOM05D003612 ORTHO05D004323 2.6e-09 65.5 87 42.5
Medtr8g090105 Medicago truncatula HOM05D003612 ORTHO05D004323 2.6e-09 65.5 85 42.4
PSO210G2319 Papaver somniferum HOM05D003612 ORTHO05D004323 2.6e-09 65.5 83 47.0
Psat3g074360 Pisum sativum HOM05D003612 ORTHO05D004323 2.6e-09 65.5 74 43.2
BcaC02g09930 Brassica carinata HOM05D003612 ORTHO05D004323 3.4e-09 65.1 82 42.7
BraA04t16040Z Brassica rapa HOM05D003612 ORTHO05D004323 3.4e-09 65.1 78 46.2
CARHR167560 Cardamine hirsuta HOM05D003612 ORTHO05D004323 3.4e-09 65.1 81 43.2
Ca_08432_v3 Cicer arietinum L. HOM05D003612 ORTHO05D004323 5.7e-09 64.3 84 44.0
MD14G1076600 Malus domestica HOM05D003612 ORTHO05D004323 5.7e-09 64.3 76 44.7
Hund15698 Selenicereus undatus HOM05D003612 ORTHO05D004323 5.7e-09 64.3 75 44.0
GSVIVG01033245001 Vitis vinifera HOM05D003612 ORTHO05D004323 5.7e-09 64.3 74 45.9
Mapoly0007s0121 Marchantia polymorpha HOM05D003612 ORTHO05D004323 7.5e-09 63.9 48 50.0
TPR.G18234 Trifolium pratense HOM05D003612 ORTHO05D004323 7.5e-09 63.9 78 39.7
Aa31LG10G12210 Aethionema arabicum HOM05D000708 ORTHO05D004323 9.8e-09 63.5 77 41.6
Thhalv10009908m.g Eutrema salsugineum HOM05D003612 ORTHO05D004323 9.8e-09 63.5 77 41.6
Aa31LG1G13790 Aethionema arabicum HOM05D003612 ORTHO05D004323 1.3e-08 63.2 74 41.9
Phvul.008G158112 Phaseolus vulgaris HOM05D003612 ORTHO05D004323 1.3e-08 63.2 78 47.4
MD12G1080400 Malus domestica HOM05D003612 ORTHO05D004323 1.7e-08 62.8 70 44.3
Psat7g055720 Pisum sativum HOM05D003612 ORTHO05D004323 1.7e-08 62.8 77 44.2
THA.LOC104802043 Tarenaya hassleriana HOM05D003612 ORTHO05D004323 1.7e-08 62.8 81 42.0
TPR.G6202 Trifolium pratense HOM05D003612 ORTHO05D004323 1.7e-08 62.8 84 40.5
VMungo1383G3573 Vigna mungo HOM05D003612 ORTHO05D004323 1.7e-08 62.8 84 40.5
CANSAT80G2682 Cannabis sativa HOM05D003612 ORTHO05D004323 2.2e-08 62.4 79 39.2
C08p32750 Brassica napus HOM05D003612 ORTHO05D004323 2.8e-08 62.0 81 42.0
BolC8t50886H Brassica oleracea HOM05D003612 ORTHO05D004323 2.8e-08 62.0 81 42.0
FAN09G3838 Fragaria x ananassa HOM05D003395 ORTHO05D004087 3.7e-08 61.6 78 43.6
VMungo1309G0648 Vigna mungo HOM05D003612 ORTHO05D004323 3.7e-08 61.6 78 44.9
FAN14G3261 Fragaria x ananassa HOM05D003395 ORTHO05D004087 4.9e-08 61.2 78 43.6
A09p50260 Brassica napus HOM05D003612 ORTHO05D004323 6.3e-08 60.8 81 40.7
BraA09t40476Z Brassica rapa HOM05D003612 ORTHO05D004323 6.3e-08 60.8 81 40.7
Glyma.07G129400 Glycine max HOM05D003612 ORTHO05D004323 6.3e-08 60.8 78 46.2
FAN02G1760 Fragaria x ananassa HOM05D003612 ORTHO05D004323 8.3e-08 60.5 73 43.8
CiPaw.09G039700 Carya illinoinensis HOM05D003612 ORTHO05D004323 1.1e-07 60.1 66 47.0
FvH4_6g24380 Fragaria vesca HOM05D003612 ORTHO05D004323 1.1e-07 60.1 73 43.8
arahy.Tifrunner.gnm1.ann1.65NHSX Arachis hypogaea HOM05D003612 ORTHO05D004323 2.4e-07 58.9 61 47.5
C08p32770 Brassica napus HOM05D003612 ORTHO05D004323 2.4e-07 58.9 81 39.5
BolC8t50888H Brassica oleracea HOM05D003612 ORTHO05D004323 2.4e-07 58.9 81 39.5
Glyma.19G136600 Glycine max HOM05D003612 ORTHO05D004323 2.4e-07 58.9 76 46.1
SMO364G0364 Selaginella moellendorffii HOM05D003612 ORTHO05D004323 2.4e-07 58.9 43 48.8
ECA236G0894 Erigeron canadensis HOM05D003612 ORTHO05D004323 3.1e-07 58.5 50 50.0
Thhalv10006455m.g Eutrema salsugineum HOM05D003612 ORTHO05D004323 3.1e-07 58.5 78 43.6
Lj6g0010730 Lotus japonicus HOM05D003612 ORTHO05D004323 3.1e-07 58.5 51 51.0
arahy.Tifrunner.gnm1.ann1.GM1CB9 Arachis hypogaea HOM05D003612 ORTHO05D004323 4.1e-07 58.2 61 47.5
DCAR_030722 Daucus carota HOM05D003612 ORTHO05D004323 4.1e-07 58.2 74 41.9
FvH4_2g14101 Fragaria vesca HOM05D003786 ORTHO05D004375 4.1e-07 58.2 78 43.6
Prupe.7G055000 Prunus persica HOM05D003612 ORTHO05D004323 4.1e-07 58.2 83 41.0
Lsat_1_v5_gn_7_11501 Lactuca sativa HOM05D000048 ORTHO05D000436 5.4e-07 57.8 45 51.1
Pp3c3_37380 Physcomitrium patens HOM05D003612 ORTHO05D004323 5.4e-07 57.8 47 48.9
Lj1A1127T48 Lonicera japonica HOM05D003612 ORTHO05D004323 9.2e-07 57.0 44 54.5
Lj1C1128T4 Lonicera japonica HOM05D003612 ORTHO05D004323 9.2e-07 57.0 42 52.4
AUR62005836 Chenopodium quinoa HOM05D000760 ORTHO05D004323 1.6e-06 56.2 75 42.7
AUR62032829 Chenopodium quinoa HOM05D003612 ORTHO05D004323 1.6e-06 56.2 75 42.7
RcHm_v2.0_Chr3g0483371 Rosa chinensis HOM05D003612 ORTHO05D004323 1.6e-06 56.2 69 43.5
A04p03190 Brassica napus HOM05D003612 ORTHO05D004323 2.7e-06 55.5 105 34.3
AUR62029731 Chenopodium quinoa HOM05D003612 ORTHO05D004323 2.7e-06 55.5 79 40.5
FAN24G0412 Fragaria x ananassa HOM05D003786 ORTHO05D004375 3.5e-06 55.1 78 42.3
PSO339G0740 Papaver somniferum HOM05D003612 ORTHO05D004323 3.5e-06 55.1 56 46.4
PSO339G0745 Papaver somniferum HOM05D003612 ORTHO05D004323 3.5e-06 55.1 56 46.4
Ah.03g134750 Amaranthus hybridus HOM05D003612 ORTHO05D004323 5.9e-06 54.3 75 42.7
Thhalv10009639m.g Eutrema salsugineum HOM05D003612 ORTHO05D004323 5.9e-06 54.3 74 39.2
Zm00001eb102310 Zea mays HOM05D003612 ORTHO05D004323 5.9e-06 54.3 65 38.5


User provided reference genes

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