Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SEGI_36410 Sequoiadendron giganteum HOM05D003517 ORTHO05D009798 4.1e-193 677.9 352 100.0
arahy.Tifrunner.gnm1.ann1.PT41Y0 Arachis hypogaea HOM05D003517 ORTHO05D009798 2.1e-64 250.4 263 55.5
Lj2P1236T76 Lonicera japonica HOM05D003517 ORTHO05D009798 3.0e-63 246.5 265 55.1
DCAR_032455 Daucus carota HOM05D003517 ORTHO05D009798 6.7e-63 245.4 262 55.0
Nn1g10026 Nelumbo nucifera HOM05D003517 ORTHO05D009798 6.7e-63 245.4 263 55.5
Nn1g10028 Nelumbo nucifera HOM05D003517 ORTHO05D009798 6.7e-63 245.4 263 55.5
Medtr0082s0030 Medicago truncatula HOM05D003517 ORTHO05D009798 8.8e-63 245.0 268 54.9
Lj5g0015285 Lotus japonicus HOM05D003517 ORTHO05D009798 1.5e-62 244.2 263 55.1
LjContig00439g0008559 Lotus japonicus HOM05D003517 ORTHO05D009798 1.5e-62 244.2 263 55.1
VMungo0985G0017 Vigna mungo HOM05D003517 ORTHO05D009798 2.0e-62 243.8 263 55.1
Solyc00g021640.2 Solanum lycopersicum HOM05D003517 ORTHO05D009798 4.8e-61 239.2 263 55.1
CAN.G110.13 Capsicum annuum HOM05D003517 ORTHO05D009798 8.2e-61 238.4 263 55.5
Lalb_Chr00c24g0406771 Lupinus albus HOM05D003517 ORTHO05D009798 1.1e-60 238.0 263 54.4
AT2G07734 Arabidopsis thaliana HOM05D003517 ORTHO05D009798 9.1e-60 235.0 262 51.9
ATMG00290 Arabidopsis thaliana HOM05D003517 ORTHO05D009798 9.1e-60 235.0 262 51.9
BraSC48t46288Z Brassica rapa HOM05D003517 ORTHO05D009798 2.6e-59 233.4 262 50.0
Thhalv10023100m.g Eutrema salsugineum HOM05D003517 ORTHO05D009798 3.5e-59 233.0 262 51.5
RcHm_v2.0_MTg0499001 Rosa chinensis HOM05D003517 ORTHO05D009798 4.5e-59 232.6 263 54.4
A04p09560 Brassica napus HOM05D003517 ORTHO05D009798 5.9e-59 232.3 262 51.5
BolSC28t60322H Brassica oleracea HOM05D003517 ORTHO05D009798 5.9e-59 232.3 262 51.5
BraSC48t46302Z Brassica rapa HOM05D003517 ORTHO05D009798 5.9e-59 232.3 262 51.5
Nitab4.5_0010559g0050 Nicotiana tabacum HOM05D003517 ORTHO05D009798 7.7e-59 231.9 263 54.0
HanXRQChr16g0504301 Helianthus annuus HOM05D003517 ORTHO05D009798 2.3e-55 220.3 264 47.7
HanXRQMTg0579381 Helianthus annuus HOM05D003517 ORTHO05D009798 2.3e-55 220.3 264 47.7
CsaV3_UNG208660 Cucumis sativus L. HOM05D003517 ORTHO05D009798 1.1e-54 218.0 263 50.2
SabraMtG0002700 Salix brachista HOM05D000890 ORTHO05D000697 1.1e-54 218.0 263 50.6
SGA_v2.0_scaffold420G51390 Striga asiatica HOM05D003517 ORTHO05D009798 1.1e-54 218.0 262 51.5
Ca_14831_v3 Cicer arietinum L. HOM05D003517 ORTHO05D009798 4.4e-54 216.1 247 53.4
Lsat_1_v5_gn_7_67721 Lactuca sativa HOM05D003517 ORTHO05D009798 1.8e-52 210.7 264 47.0
Zm00001eb436030 Zea mays HOM05D003517 ORTHO05D009798 9.1e-52 208.4 273 48.0
Nitab4.5_0003784g0040 Nicotiana tabacum HOM05D003517 ORTHO05D009798 2.0e-51 207.2 263 50.2
GSVIVG01006669001 Vitis vinifera HOM05D003517 ORTHO05D009798 8.5e-50 201.8 262 47.3
Peaxi162Scf00456g00032 Petunia axillaris HOM05D003517 ORTHO05D009794 7.2e-49 198.7 244 51.2
CAN.G85.23 Capsicum annuum HOM05D003517 ORTHO05D009798 2.7e-40 170.2 171 56.7
Hma1.2p1_0020F.1_g014210 Hydrangea macrophylla HOM05D003517 ORTHO05D009798 2.2e-37 160.6 215 47.4
Zm00001eb384400 Zea mays HOM05D003517 ORTHO05D009798 6.3e-37 159.1 181 49.7
PGSC0003DMG400033608 Solanum tuberosum HOM05D003517 ORTHO05D009798 1.4e-36 157.9 150 58.7
TPR.G20538 Trifolium pratense HOM05D003517 ORTHO05D009798 1.6e-35 154.5 129 60.5
Hma1.2p1_0020F.1_g014220 Hydrangea macrophylla HOM05D003517 ORTHO05D009798 3.5e-35 153.3 137 57.7
CAN.G1109.3 Capsicum annuum HOM05D003517 ORTHO05D009798 2.3e-34 150.6 133 60.2
MBI05_g23322_MAGBIO Magnolia biondii HOM05D003517 ORTHO05D009798 3.8e-34 149.8 217 46.1
Eucgr.H02717 Eucalyptus grandis HOM05D003517 ORTHO05D009798 3.3e-33 146.7 208 46.2
Eucgr.C02512 Eucalyptus grandis HOM05D003517 ORTHO05D009798 2.3e-31 140.6 212 45.3
HanXRQChr10g0310901 Helianthus annuus HOM05D003517 ORTHO05D009798 3.0e-31 140.2 167 49.1
BolSC28t60424H Brassica oleracea HOM05D003517 ORTHO05D009798 4.0e-31 139.8 131 54.2
Sp3g25550 Schrenkiella parvula HOM05D003517 ORTHO05D009798 6.4e-29 132.5 262 37.4
Zm00001eb438100 Zea mays HOM05D003517 ORTHO05D009798 1.8e-28 131.0 129 55.0
Zm00001eb438980 Zea mays HOM05D003517 ORTHO05D009798 1.8e-28 131.0 129 55.0
Zm00001eb439060 Zea mays HOM05D003517 ORTHO05D009798 1.8e-28 131.0 129 55.0
Gorai.001G161800 Gossypium raimondii HOM05D003517 ORTHO05D009798 2.0e-27 127.5 262 38.5
Lalb_Chr22g0353801 Lupinus albus HOM05D003517 ORTHO05D009798 1.0e-26 125.2 121 53.7
EL10Ac7g18051 Beta vulgaris HOM05D003517 ORTHO05D009798 1.5e-25 121.3 142 48.6
PSO063G7170 Papaver somniferum HOM05D003517 ORTHO05D009798 1.0e-23 115.2 172 37.8
PSO585G0042 Papaver somniferum HOM05D003517 ORTHO05D009798 8.9e-23 112.1 172 38.4
Nitab4.5_0000172g1110 Nicotiana tabacum HOM05D003517 ORTHO05D009798 4.4e-22 109.8 105 55.2
Nitab4.5_0000172g2160 Nicotiana tabacum HOM05D003517 ORTHO05D009798 4.4e-22 109.8 128 47.7
Nitab4.5_0001152g0040 Nicotiana tabacum HOM05D003517 ORTHO05D009798 1.1e-20 105.1 105 51.4
unitig_87.g28026 Utricularia gibba HOM05D003517 ORTHO05D009798 1.1e-20 105.1 181 42.5
Oeu013683.1 Olea europaea HOM05D003517 ORTHO05D009798 3.2e-20 103.6 167 41.3
HanXRQChr10g0302361 Helianthus annuus HOM05D003517 ORTHO05D009798 2.0e-19 100.9 106 51.9
TPR.G36113 Trifolium pratense HOM05D003517 ORTHO05D009798 3.0e-18 97.1 125 52.0
Nn1g09918 Nelumbo nucifera HOM05D003517 ORTHO05D009798 2.5e-17 94.0 89 52.8
SGA_v2.0_scaffold648G53338 Striga asiatica HOM05D003517 ORTHO05D009798 9.5e-17 92.0 71 63.4
Nitab4.5_0003945g0070 Nicotiana tabacum HOM05D003517 ORTHO05D009798 1.6e-16 91.3 75 62.7
SHI35305 Sapria himalayana HOM05D003517 ORTHO05D009798 1.6e-16 91.3 160 41.9
Solyc11g030940.3 Solanum lycopersicum HOM05D003517 ORTHO05D009798 1.6e-16 91.3 88 53.4
BraSC48t46337Z Brassica rapa HOM05D003517 ORTHO05D009798 8.1e-16 89.0 137 40.9
Nitab4.5_0000172g2130 Nicotiana tabacum HOM05D003517 ORTHO05D009798 6.8e-15 85.9 101 53.5
Nitab4.5_0003945g0030 Nicotiana tabacum HOM05D003517 ORTHO05D009798 2.6e-14 84.0 104 52.9
Zm00001eb438110 Zea mays HOM05D003517 ORTHO05D009798 7.5e-14 82.4 115 47.0
Zm00001eb438970 Zea mays HOM05D003517 ORTHO05D009798 7.5e-14 82.4 115 47.0
Zm00001eb439050 Zea mays HOM05D003517 ORTHO05D009798 7.5e-14 82.4 115 47.0
Zm00001eb440630 Zea mays HOM05D003517 ORTHO05D009798 7.5e-14 82.4 115 47.0
TPR.G31549 Trifolium pratense HOM05D003517 ORTHO05D009798 2.2e-13 80.9 91 46.2
CARHR287140 Cardamine hirsuta HOM05D003517 ORTHO05D009798 1.6e-08 64.7 78 46.2
Nitab4.5_0001152g0030 Nicotiana tabacum HOM05D003517 ORTHO05D009794 1.6e-08 64.7 109 41.3
Nitab4.5_0001152g0970 Nicotiana tabacum HOM05D003517 ORTHO05D025894 1.6e-08 64.7 35 82.9
Nitab4.5_0001152g1080 Nicotiana tabacum HOM05D003517 ORTHO05D009798 2.1e-08 64.3 93 43.0
Nitab4.5_0000172g1090 Nicotiana tabacum HOM05D003517 ORTHO05D009794 1.8e-07 61.2 103 36.9
Medtr0030s0090 Medicago truncatula HOM05D003517 ORTHO05D009798 2.0e-06 57.8 70 51.4
Nitab4.5_0000351g0300 Nicotiana tabacum HOM05D003517 ORTHO05D009798 2.0e-06 57.8 61 50.8


User provided reference genes

Program Settings