Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SEGI_35648 Sequoiadendron giganteum HOM05D003977 ORTHO05D004536 0.0e+00 1944.9 1048 100.0
SEGI_33786 Sequoiadendron giganteum HOM05D003977 ORTHO05D004536 0.0e+00 1711.0 900 100.0
ATR0582G127 Amborella trichopoda HOM05D003977 ORTHO05D004536 0.0e+00 1249.6 1053 64.4
Nn4g22094 Nelumbo nucifera HOM05D003977 ORTHO05D004536 0.0e+00 1208.0 1034 63.8
MBI11_g07996_MAGBIO Magnolia biondii HOM05D003977 ORTHO05D004536 0.0e+00 1200.7 1044 62.3
TAR622G1067 Trochodendron aralioides HOM05D003977 ORTHO05D004536 0.0e+00 1199.5 1053 62.6
Dinv06987 Davidia involucrata HOM05D003977 ORTHO05D004536 0.0e+00 1172.9 1036 60.8
Nn3g16238 Nelumbo nucifera HOM05D003977 ORTHO05D004536 0.0e+00 1170.2 1023 62.7
RcHm_v2.0_Chr1g0326641 Rosa chinensis HOM05D003977 ORTHO05D004536 0.0e+00 1169.8 1038 60.8
Sed0027944 Sechium edule HOM05D003977 ORTHO05D004536 0.0e+00 1167.1 1036 60.4
ClCG05G026990 Citrullus lanatus HOM05D003977 ORTHO05D004536 0.0e+00 1161.0 1039 60.0
Dinv14623 Davidia involucrata HOM05D003977 ORTHO05D004536 0.0e+00 1160.6 1026 61.1
CiPaw.06G056400 Carya illinoinensis HOM05D003977 ORTHO05D004536 0.0e+00 1159.4 1020 60.3
MELO3C012492.2 Cucumis melo HOM05D003977 ORTHO05D004536 0.0e+00 1158.7 1009 61.3
PSO017G2490 Papaver somniferum HOM05D003977 ORTHO05D004536 0.0e+00 1157.9 1017 61.6
Ciclev10000128m.g Citrus clementina HOM05D003977 ORTHO05D004536 0.0e+00 1157.5 1026 60.2
PSO478G2410 Papaver somniferum HOM05D003977 ORTHO05D004536 0.0e+00 1157.1 1017 61.4
CsaV3_5G036930 Cucumis sativus L. HOM05D003977 ORTHO05D004536 0.0e+00 1155.2 1009 61.1
MD07G1045800 Malus domestica HOM05D003977 ORTHO05D004536 0.0e+00 1152.9 1034 60.2
FvH4_7g03720 Fragaria vesca HOM05D003977 ORTHO05D004536 0.0e+00 1150.2 1025 60.3
Sed0009106 Sechium edule HOM05D003977 ORTHO05D004536 0.0e+00 1150.2 1017 60.5
Glyma.15G230300 Glycine max HOM05D003977 ORTHO05D004536 0.0e+00 1149.8 1038 60.3
QL93p0049_0031 Quercus lobata HOM05D003977 ORTHO05D004536 0.0e+00 1148.3 1045 59.2
TWI38G1846 Tripterygium wilfordii HOM05D003977 ORTHO05D004536 0.0e+00 1146.7 1006 62.7
FAN06G3123 Fragaria x ananassa HOM05D003977 ORTHO05D004536 0.0e+00 1146.3 1004 61.0
Ca_23978_v3 Cicer arietinum L. HOM05D003977 ORTHO05D004536 0.0e+00 1145.6 1061 59.0
Glyma.13G192400 Glycine max HOM05D003977 ORTHO05D004536 0.0e+00 1145.6 1037 60.1
QL04p021130 Quercus lobata HOM05D003977 ORTHO05D004536 0.0e+00 1144.4 1047 58.5
Atru.chr12.1306 Acer truncatum HOM05D003977 ORTHO05D004536 0.0e+00 1143.6 1039 59.4
Rhsim12G0015900 Rhododendron simsii HOM05D003977 ORTHO05D004536 0.0e+00 1143.6 1025 60.6
THA.LOC104799327 Tarenaya hassleriana HOM05D003977 ORTHO05D004536 0.0e+00 1139.8 1048 59.4
PGSC0003DMG400011581 Solanum tuberosum HOM05D003977 ORTHO05D004536 0.0e+00 1139.4 1031 60.0
Aqoxy5G03020 Aquilegia oxysepala HOM05D003977 ORTHO05D004536 0.0e+00 1137.1 1037 59.6
GSVIVG01035560001 Vitis vinifera HOM05D003977 ORTHO05D004536 0.0e+00 1135.2 1015 60.4
FAN01G0005 Fragaria x ananassa HOM05D003977 ORTHO05D004536 0.0e+00 1134.8 1011 60.1
Cfa010949 Carpinus fangiana HOM05D003977 ORTHO05D004536 0.0e+00 1134.4 1018 60.3
vmacro01007 Vaccinium macrocarpon HOM05D003977 ORTHO05D004536 0.0e+00 1134.0 1047 59.3
Haze_02995 Corylus avellana HOM05D003977 ORTHO05D004536 0.0e+00 1133.6 1028 59.6
arahy.Tifrunner.gnm1.ann1.I0XR4S Arachis hypogaea HOM05D003977 ORTHO05D004536 0.0e+00 1131.7 1059 58.3
FAN03G2084 Fragaria x ananassa HOM05D003977 ORTHO05D004536 0.0e+00 1131.3 1004 60.2
Potri.001G031400 Populus trichocarpa HOM05D003977 ORTHO05D004536 0.0e+00 1130.9 1023 59.5
Solyc09g091280.4 Solanum lycopersicum HOM05D003977 ORTHO05D004536 0.0e+00 1129.4 1031 59.8
Sopen09g034250 Solanum pennellii HOM05D003977 ORTHO05D004536 0.0e+00 1128.6 1031 59.7
CAN.G1588.14 Capsicum annuum HOM05D003977 ORTHO05D004536 0.0e+00 1127.5 1032 60.3
Lalb_Chr03g0032201 Lupinus albus HOM05D003977 ORTHO05D004536 0.0e+00 1127.1 1041 59.2
Prupe.2G042800 Prunus persica HOM05D003977 ORTHO05D004536 0.0e+00 1127.1 1030 59.5
Duzib106G1228 Durio zibethinus HOM05D003977 ORTHO05D004536 0.0e+00 1125.9 1035 58.3
Peaxi162Scf00047g01540 Petunia axillaris HOM05D003977 ORTHO05D004536 0.0e+00 1125.2 1003 61.1
CiPaw.14G009300 Carya illinoinensis HOM05D003977 ORTHO05D004536 0.0e+00 1124.0 1027 59.2
arahy.Tifrunner.gnm1.ann1.Q9GEU7 Arachis hypogaea HOM05D003977 ORTHO05D004536 0.0e+00 1122.8 1032 59.0
Lj1g0022785 Lotus japonicus HOM05D003977 ORTHO05D004536 0.0e+00 1122.5 1023 59.3
Lalb_Chr19g0132941 Lupinus albus HOM05D003977 ORTHO05D004536 0.0e+00 1121.7 1037 59.5
Glyma.04G192200 Glycine max HOM05D003977 ORTHO05D004536 0.0e+00 1121.3 1021 59.6
MD02G1277700 Malus domestica HOM05D003977 ORTHO05D004536 0.0e+00 1120.5 988 60.4
Sabra01G0022500 Salix brachista HOM05D003977 ORTHO05D004536 0.0e+00 1119.8 1044 58.0
CSS0046878 Camellia sinensis var. sinensis HOM05D003977 ORTHO05D004536 0.0e+00 1118.6 1017 59.9
VMungo1127G0455 Vigna mungo HOM05D003977 ORTHO05D004536 0.0e+00 1118.6 1022 59.0
Phvul.011G201200 Phaseolus vulgaris HOM05D003977 ORTHO05D004536 0.0e+00 1117.4 1033 59.1
THA.LOC104826752 Tarenaya hassleriana HOM05D003977 ORTHO05D004536 0.0e+00 1117.4 1035 58.9
TPR.G8543 Trifolium pratense HOM05D003977 ORTHO05D004536 0.0e+00 1115.9 1048 59.0
TWI15G1223 Tripterygium wilfordii HOM05D003977 ORTHO05D004536 0.0e+00 1115.9 1009 59.0
Medtr8g040560 Medicago truncatula HOM05D003977 ORTHO05D004536 0.0e+00 1115.1 1043 58.8
Psat4g145000 Pisum sativum HOM05D003977 ORTHO05D004536 0.0e+00 1114.8 1043 59.1
Prupe.8G086800 Prunus persica HOM05D003977 ORTHO05D004536 0.0e+00 1110.9 1034 59.1
Lj3g0027102 Lotus japonicus HOM05D003977 ORTHO05D004536 0.0e+00 1106.3 1070 57.2
Aa31LG7G12510 Aethionema arabicum HOM05D003977 ORTHO05D004536 0.0e+00 1105.1 1027 58.7
Duzib114G0684 Durio zibethinus HOM05D003977 ORTHO05D004536 0.0e+00 1101.3 1038 57.6
Cc11_g14880 Coffea canephora HOM05D003977 ORTHO05D004536 0.0e+00 1100.9 1043 57.4
DCAR_004259 Daucus carota HOM05D003977 ORTHO05D004536 0.0e+00 1099.0 1036 58.3
DCAR_004260 Daucus carota HOM05D003977 ORTHO05D004536 0.0e+00 1099.0 1036 58.3
TAR629G1670 Trochodendron aralioides HOM05D003977 ORTHO05D004536 0.0e+00 1094.0 950 62.1
FAN10G3794 Fragaria x ananassa HOM05D003977 ORTHO05D004536 0.0e+00 1091.3 1027 57.9
DCAR_008196 Daucus carota HOM05D003977 ORTHO05D004536 0.0e+00 1090.1 1023 57.8
Gohir.A05G399500 Gossypium hirsutum HOM05D003977 ORTHO05D004536 0.0e+00 1089.3 1050 56.6
Carub.0003s1164 Capsella rubella HOM05D003977 ORTHO05D004536 0.0e+00 1088.6 1056 57.3
Gorai.012G019200 Gossypium raimondii HOM05D003977 ORTHO05D004536 0.0e+00 1088.2 1051 56.7
Gohir.D04G016400 Gossypium hirsutum HOM05D003977 ORTHO05D004536 0.0e+00 1086.2 1051 56.3
Gohir.D04G016500 Gossypium hirsutum HOM05D003977 ORTHO05D004536 0.0e+00 1086.2 1051 56.6
HanXRQChr06g0175421 Helianthus annuus HOM05D003977 ORTHO05D004536 0.0e+00 1084.3 1036 57.0
AL3G23940 Arabidopsis lyrata HOM05D003977 ORTHO05D004536 0.0e+00 1082.8 1058 57.3
Gorai.012G019100 Gossypium raimondii HOM05D003977 ORTHO05D004536 0.0e+00 1082.8 1058 56.0
Sp3g10500 Schrenkiella parvula HOM05D003977 ORTHO05D004536 0.0e+00 1080.9 1053 57.0
PGR031G0564 Punica granatum HOM05D003977 ORTHO05D004536 0.0e+00 1077.4 1039 56.5
Thecc.10G142800 Theobroma cacao HOM05D003977 ORTHO05D004536 7.2e-312 1073.9 1041 57.7
AT3G12280 Arabidopsis thaliana HOM05D003977 ORTHO05D004536 1.4e-311 1072.8 1052 56.9
CANSAT56G0684 Cannabis sativa HOM05D003977 ORTHO05D004536 6.5e-311 1070.8 1040 57.3
BolC1t05248H Brassica oleracea HOM05D003977 ORTHO05D004536 8.6e-311 1070.5 1027 57.4
ECA246G4717 Erigeron canadensis HOM05D003977 ORTHO05D004536 1.4e-310 1069.7 1027 57.0
BcaC09g48227 Brassica carinata HOM05D003977 ORTHO05D004536 2.4e-310 1068.9 1017 57.7
COL.COLO4_20737 Corchorus olitorius HOM05D003977 ORTHO05D004536 2.4e-310 1068.9 1033 57.6
C01p53050 Brassica napus HOM05D003977 ORTHO05D004536 4.2e-310 1068.1 1027 57.4
A05p37080 Brassica napus HOM05D003977 ORTHO05D004536 7.1e-310 1067.4 1053 57.4
BolC5t34217H Brassica oleracea HOM05D003977 ORTHO05D004536 1.2e-309 1066.6 1041 57.1
CARHR086830 Cardamine hirsuta HOM05D003977 ORTHO05D004536 2.1e-309 1065.8 1056 56.6
Sc02g0008490 Simmondsia chinensis HOM05D003977 ORTHO05D004536 2.1e-309 1065.8 1025 56.5
AUR62035738 Chenopodium quinoa HOM05D003977 ORTHO05D004536 7.8e-309 1063.9 1049 55.1
CDE09G1395 Ceratophyllum demersum HOM05D003977 ORTHO05D004536 3.0e-308 1062.0 1026 57.7
EL10Ac1g02273 Beta vulgaris HOM05D003977 ORTHO05D004536 5.1e-308 1061.2 1090 54.3
C05p55510 Brassica napus HOM05D003977 ORTHO05D004536 5.1e-308 1061.2 1053 57.2
AUR62033843 Chenopodium quinoa HOM05D003977 ORTHO05D004536 8.7e-308 1060.4 1060 54.8
MSTRG.444 Avicennia marina HOM05D003977 ORTHO05D004536 1.5e-307 1059.7 1014 57.8
Migut.K01127 Erythranthe guttata HOM05D003977 ORTHO05D004536 1.9e-307 1059.3 1009 57.3
Thhalv10019977m.g Eutrema salsugineum HOM05D003977 ORTHO05D004536 7.3e-307 1057.4 1034 56.7
Os08g0538700 Oryza sativa ssp. japonica HOM05D003977 ORTHO05D004536 9.6e-307 1057.0 1003 57.7
HPP92_000321 Vanilla planifolia HOM05D003977 ORTHO05D004536 1.5e-304 1049.7 1055 55.6
Zm00001eb037120 Zea mays HOM05D003977 ORTHO05D004536 4.9e-303 1044.6 1004 57.1
AUR62041503 Chenopodium quinoa HOM05D003977 ORTHO05D004536 6.4e-303 1044.3 1042 54.7
Eucgr.G03211 Eucalyptus grandis HOM05D003977 ORTHO05D004536 8.4e-303 1043.9 1019 55.7
C03p45560 Brassica napus HOM05D003977 ORTHO05D004536 6.6e-300 1034.2 1029 56.3
Gorai.009G299000 Gossypium raimondii HOM05D003977 ORTHO05D004536 1.5e-299 1033.1 1032 55.8
BolC3t16833H Brassica oleracea HOM05D003977 ORTHO05D004536 2.5e-299 1032.3 1037 56.0
Lsat_1_v5_gn_3_33021 Lactuca sativa HOM05D003977 ORTHO05D004536 2.5e-299 1032.3 1018 56.7
BcaB04g18687 Brassica carinata HOM05D003977 ORTHO05D004536 3.1e-297 1025.4 1047 55.5
A03p37570 Brassica napus HOM05D003977 ORTHO05D004536 2.6e-296 1022.3 1025 56.0
Hund13302 Selenicereus undatus HOM05D003977 ORTHO05D004536 9.9e-296 1020.4 1056 54.7
SGA_v2.0_scaffold81G25979 Striga asiatica HOM05D003977 ORTHO05D004536 1.3e-295 1020.0 1033 55.3
Manes.16G045800 Manihot esculenta HOM05D003977 ORTHO05D004536 1.7e-295 1019.6 909 61.6
SalBow2G0230 Salvia bowleyana HOM05D003977 ORTHO05D004536 3.8e-295 1018.5 1053 55.2
BraA03t12911Z Brassica rapa HOM05D003977 ORTHO05D004536 7.1e-294 1014.2 1045 55.0
Manes.03G097800 Manihot esculenta HOM05D003977 ORTHO05D004536 4.6e-293 1011.5 903 60.6
Gohir.D05G284400 Gossypium hirsutum HOM05D003977 ORTHO05D004536 3.9e-292 1008.4 990 56.7
Gohir.A05G283400 Gossypium hirsutum HOM05D003977 ORTHO05D004536 5.6e-291 1004.6 1009 55.5
PSO478G5179 Papaver somniferum HOM05D003977 ORTHO05D004536 5.3e-289 998.0 1051 54.4
Gohir.A05G399400 Gossypium hirsutum HOM05D003977 ORTHO05D004536 2.3e-284 982.6 933 57.3
Nitab4.5_0002182g0050 Nicotiana tabacum HOM05D003977 ORTHO05D004536 2.5e-278 962.6 1035 55.0
Mapoly0131s0020 Marchantia polymorpha HOM05D003977 ORTHO05D004536 2.7e-277 959.1 1046 52.5
Nitab4.5_0008702g0020 Nicotiana tabacum HOM05D003977 ORTHO05D004536 3.5e-277 958.7 1037 54.1
Ah.05g166690 Amaranthus hybridus HOM05D003977 ORTHO05D004536 4.5e-272 941.8 958 55.0
Pp3c15_2800 Physcomitrium patens HOM05D003977 ORTHO05D004536 8.2e-266 921.0 1001 50.8
Pp3c9_2440 Physcomitrium patens HOM05D003977 ORTHO05D004536 1.2e-264 917.1 983 51.1
unitig_26.g10435 Utricularia gibba HOM05D003977 ORTHO05D004536 5.5e-262 908.3 1085 49.8
BcaC01g04055 Brassica carinata HOM05D003977 ORTHO05D004536 3.0e-260 902.5 866 57.0
Zm00001eb198220 Zea mays HOM05D003977 ORTHO05D004536 1.8e-252 876.7 848 55.9
AagrBONN_evm.TU.Sc2ySwM_362.2961 Anthoceros agrestis HOM05D003977 ORTHO05D004536 2.6e-248 862.8 1039 48.5
CDE02G2393 Ceratophyllum demersum HOM05D003977 ORTHO05D004536 3.2e-246 855.9 804 59.5
CSS0026343 Camellia sinensis var. sinensis HOM05D003977 ORTHO05D004536 7.3e-222 775.0 1028 48.0
Os11g0533500 Oryza sativa ssp. japonica HOM05D003977 ORTHO05D004536 8.0e-221 771.5 1007 45.8
MBI11_g02479_MAGBIO Magnolia biondii HOM05D003977 ORTHO05D004536 2.3e-212 743.4 790 56.6
Cpa.g.sc169.40 Carica papaya HOM05D003977 ORTHO05D004536 6.0e-208 728.8 997 44.8
SMO134G0004 Selaginella moellendorffii HOM05D003977 ORTHO05D004536 2.6e-203 713.4 924 46.1
Zm00001eb113470 Zea mays HOM05D003977 ORTHO05D004536 1.0e-191 674.9 850 48.4
Zm00001eb197990 Zea mays HOM05D003977 ORTHO05D004536 1.7e-191 674.1 839 46.5
Lj3A1077G55 Lonicera japonica HOM05D003977 ORTHO05D004536 1.5e-187 661.0 733 52.7
unitig_22.g6370 Utricularia gibba HOM05D003977 ORTHO05D004536 1.9e-177 627.5 646 54.0
SMO141G0281 Selaginella moellendorffii HOM05D003977 ORTHO05D004536 2.1e-176 624.0 995 40.6
CBR_g45825 Chara braunii HOM05D003977 ORTHO05D004536 1.1e-158 565.1 1124 36.4
HPP92_009801 Vanilla planifolia HOM05D002468 ORTHO05D005371 7.7e-155 552.4 864 42.2
Pp3c19_9580 Physcomitrium patens HOM05D003977 ORTHO05D004536 1.6e-152 544.7 593 55.1
Ciclev10003102m.g Citrus clementina HOM05D003977 ORTHO05D004536 4.5e-147 526.6 732 48.1
SEGI_04896 Sequoiadendron giganteum HOM05D003977 ORTHO05D004536 6.5e-146 522.7 341 79.8
GSVIVG01032958001 Vitis vinifera HOM05D003977 ORTHO05D004536 1.1e-145 521.9 645 48.5
Manes.11G074000 Manihot esculenta HOM05D003977 ORTHO05D004536 1.8e-127 461.5 674 43.9
Ciclev10014630m.g Citrus clementina HOM05D003977 ORTHO05D004536 7.0e-124 449.5 594 45.3
BraA05t22505Z Brassica rapa HOM05D003977 ORTHO05D004536 5.0e-114 416.8 394 55.6
Atru.chr6.2718 Acer truncatum HOM05D003977 ORTHO05D004536 1.4e-100 372.1 605 40.0
QL04p021333 Quercus lobata HOM05D003977 ORTHO05D004536 6.8e-87 326.6 550 38.9
Hma1.2p1_0073F.1_g038600 Hydrangea macrophylla HOM05D003977 ORTHO05D004536 4.0e-71 274.2 258 55.0
PRCOL_00001859 Prasinoderma coloniale HOM05D003977 ORTHO05D004536 4.5e-70 270.8 681 32.7
Hma1.2p1_0164F.1_g073080 Hydrangea macrophylla HOM05D003977 ORTHO05D004536 8.7e-66 256.5 233 57.9
unitig_22.g6371 Utricularia gibba HOM05D003977 ORTHO05D004536 2.9e-61 241.5 269 51.3
MCO08G295 Micromonas commoda HOM05D003977 ORTHO05D004536 1.8e-55 222.2 524 32.8
Cre06.g255450 Chlamydomonas reinhardtii HOM05D003977 ORTHO05D004536 6.9e-55 220.3 915 26.0
Pp3c19_9596 Physcomitrium patens HOM05D003977 ORTHO05D004536 1.1e-52 213.0 223 49.3
CDE02G2628 Ceratophyllum demersum HOM05D003977 ORTHO05D004536 2.5e-52 211.8 221 49.8
Pp3c19_9550 Physcomitrium patens HOM05D003977 ORTHO05D004536 2.2e-45 188.7 154 61.7
HanXRQChr04g0106401 Helianthus annuus HOM05D003977 ORTHO05D004536 7.9e-43 180.3 287 41.8
C02p49640 Brassica napus HOM05D003977 ORTHO05D004536 1.4e-39 169.5 146 58.2
BolC2t11042H Brassica oleracea HOM05D003977 ORTHO05D004536 4.5e-38 164.5 140 59.3
Hma1.2p1_0468F.1_g158780 Hydrangea macrophylla HOM05D003977 ORTHO05D004536 1.7e-32 146.0 148 50.7
Oeu034276.1 Olea europaea HOM05D003977 ORTHO05D004536 1.7e-29 136.0 179 46.4
SalBow1G6973 Salvia bowleyana HOM05D003977 ORTHO05D004536 1.6e-22 112.8 130 43.8
Hma1.2p1_0112F.1_g054450 Hydrangea macrophylla HOM05D000462 ORTHO05D004536 1.6e-19 102.8 112 47.3
Hma1.2p1_1036F.1_g250510 Hydrangea macrophylla HOM05D000462 ORTHO05D004536 8.0e-19 100.5 88 54.5
SalBow2G2207 Salvia bowleyana HOM05D003977 ORTHO05D004536 9.7e-17 93.6 114 41.2
Rhsim02G0185900 Rhododendron simsii HOM05D016728 ORTHO05D340288 1.7e-13 82.8 62 69.4
Medtr3g006170 Medicago truncatula HOM05D003977 ORTHO05D004536 3.4e-09 68.6 70 51.4


User provided reference genes

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