Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SEGI_34381 Sequoiadendron giganteum HOM05D004132 ORTHO05D018522 1.0e-66 256.5 125 100.0
Aqoxy2G02279 Aquilegia oxysepala HOM05D004132 ORTHO05D006273 6.3e-48 194.1 108 85.2
QL04p095526 Quercus lobata HOM05D004132 ORTHO05D006273 6.3e-48 194.1 105 85.7
Lj6g0002780 Lotus japonicus HOM05D004132 ORTHO05D006273 8.2e-48 193.7 106 85.8
CiPaw.09G074000 Carya illinoinensis HOM05D004132 ORTHO05D006273 1.4e-47 193.0 106 84.0
Lsat_1_v5_gn_8_118000 Lactuca sativa HOM05D004132 ORTHO05D006273 3.1e-47 191.8 106 81.1
Cfa000667 Carpinus fangiana HOM05D004132 ORTHO05D006273 4.1e-47 191.4 106 83.0
arahy.Tifrunner.gnm1.ann1.KJS3LB Arachis hypogaea HOM05D004132 ORTHO05D006273 5.3e-47 191.0 106 84.0
arahy.Tifrunner.gnm1.ann1.L32XPY Arachis hypogaea HOM05D004132 ORTHO05D006273 5.3e-47 191.0 106 84.0
CSS0017532 Camellia sinensis var. sinensis HOM05D004132 ORTHO05D006273 7.0e-47 190.7 106 83.0
Lj5g0016492 Lotus japonicus HOM05D004132 ORTHO05D006273 7.0e-47 190.7 106 84.9
TAR627G0383 Trochodendron aralioides HOM05D004132 ORTHO05D018522 7.0e-47 190.7 106 84.0
Aqoxy7G00307 Aquilegia oxysepala HOM05D004132 ORTHO05D006273 9.1e-47 190.3 108 82.4
Psat3g096280 Pisum sativum HOM05D004132 ORTHO05D006273 1.2e-46 189.9 106 84.9
Thecc.04G197300 Theobroma cacao HOM05D004132 ORTHO05D006273 1.2e-46 189.9 106 82.1
Glyma.18G291800 Glycine max HOM05D004132 ORTHO05D006273 1.6e-46 189.5 106 83.0
Potri.013G105200 Populus trichocarpa HOM05D004132 ORTHO05D006273 1.6e-46 189.5 106 82.1
Cpa.g.sc84.15 Carica papaya HOM05D004132 ORTHO05D006273 2.0e-46 189.1 106 83.0
MD05G1248600 Malus domestica HOM05D004132 ORTHO05D006273 2.0e-46 189.1 106 84.0
Medtr7g083030 Medicago truncatula HOM05D004132 ORTHO05D006273 2.0e-46 189.1 106 83.0
MD10G1229100 Malus domestica HOM05D004132 ORTHO05D006273 2.7e-46 188.7 106 83.0
PSO063G4358 Papaver somniferum HOM05D004132 ORTHO05D006273 2.7e-46 188.7 106 82.1
PSO421G0604 Papaver somniferum HOM05D004132 ORTHO05D006273 2.7e-46 188.7 106 82.1
ECA232G2283 Erigeron canadensis HOM05D004132 ORTHO05D006273 3.5e-46 188.3 106 81.1
HanXRQChr12g0367151 Helianthus annuus HOM05D004132 ORTHO05D006273 4.5e-46 188.0 106 81.1
Lj1g0015918 Lotus japonicus HOM05D004132 ORTHO05D006273 4.5e-46 188.0 106 84.9
Lalb_Chr17g0336121 Lupinus albus HOM05D004132 ORTHO05D006273 4.5e-46 188.0 106 81.1
THA.LOC104800472 Tarenaya hassleriana HOM05D004132 ORTHO05D006273 4.5e-46 188.0 106 81.1
GSVIVG01010923001 Vitis vinifera HOM05D004132 ORTHO05D006273 4.5e-46 188.0 106 83.0
Ah.04g159510 Amaranthus hybridus HOM05D004132 ORTHO05D006273 5.9e-46 187.6 106 83.0
Cc09_g05560 Coffea canephora HOM05D004132 ORTHO05D006273 5.9e-46 187.6 106 81.1
Dinv31163 Davidia involucrata HOM05D004132 ORTHO05D006273 5.9e-46 187.6 106 80.2
Eucgr.C02393 Eucalyptus grandis HOM05D004132 ORTHO05D006273 5.9e-46 187.6 106 80.2
Glyma.02G091300 Glycine max HOM05D004132 ORTHO05D006273 5.9e-46 187.6 106 82.1
Prupe.4G115500 Prunus persica HOM05D004132 ORTHO05D006273 5.9e-46 187.6 106 83.0
Ca_06096_v3 Cicer arietinum L. HOM05D004132 ORTHO05D006273 7.7e-46 187.2 106 83.0
ClCG01G025610 Citrullus lanatus HOM05D004132 ORTHO05D006273 7.7e-46 187.2 107 83.2
Eucgr.C02274 Eucalyptus grandis HOM05D004132 ORTHO05D006273 7.7e-46 187.2 106 79.2
VMungo1383G0131 Vigna mungo HOM05D004132 ORTHO05D006273 7.7e-46 187.2 106 82.1
Carub.0005s2499 Capsella rubella HOM05D004132 ORTHO05D006273 1.0e-45 186.8 106 83.0
MELO3C007024.2 Cucumis melo HOM05D004132 ORTHO05D006273 1.0e-45 186.8 107 83.2
Dinv25393 Davidia involucrata HOM05D004132 ORTHO05D006273 1.0e-45 186.8 106 81.1
MBI07_g09898_MAGBIO Magnolia biondii HOM05D004132 ORTHO05D006273 1.0e-45 186.8 106 81.1
THA.LOC104826464 Tarenaya hassleriana HOM05D004132 ORTHO05D006273 1.0e-45 186.8 106 81.1
Ah.06g194990 Amaranthus hybridus HOM05D004132 ORTHO05D006273 1.3e-45 186.4 106 82.1
Duzib151G0861 Durio zibethinus HOM05D004132 ORTHO05D006273 1.3e-45 186.4 106 81.1
FAN16G0015 Fragaria x ananassa HOM05D004132 ORTHO05D006273 1.3e-45 186.4 106 82.1
Gohir.D10G139300 Gossypium hirsutum HOM05D004132 ORTHO05D006273 1.3e-45 186.4 106 79.2
Gorai.011G155000 Gossypium raimondii HOM05D004132 ORTHO05D006273 1.3e-45 186.4 106 79.2
TAR626G0350 Trochodendron aralioides HOM05D004132 ORTHO05D006273 1.3e-45 186.4 106 80.2
BcaB02g07547 Brassica carinata HOM05D004132 ORTHO05D006273 1.7e-45 186.0 106 83.0
BcaC07g40275 Brassica carinata HOM05D004132 ORTHO05D006273 1.7e-45 186.0 106 83.0
BcaC08g44901 Brassica carinata HOM05D004132 ORTHO05D006273 1.7e-45 186.0 106 83.0
A07p23930 Brassica napus HOM05D004132 ORTHO05D006273 1.7e-45 186.0 106 83.0
A09p50920 Brassica napus HOM05D004132 ORTHO05D006273 1.7e-45 186.0 106 83.0
C06p25160 Brassica napus HOM05D004132 ORTHO05D006273 1.7e-45 186.0 106 83.0
C08p33670 Brassica napus HOM05D004132 ORTHO05D006273 1.7e-45 186.0 106 83.0
BolC6t37674H Brassica oleracea HOM05D004132 ORTHO05D006273 1.7e-45 186.0 106 83.0
BraA07t30044Z Brassica rapa HOM05D004132 ORTHO05D006273 1.7e-45 186.0 106 83.0
BraA09t40538Z Brassica rapa HOM05D004132 ORTHO05D006273 1.7e-45 186.0 106 83.0
FvH4_3g12680 Fragaria vesca HOM05D004132 ORTHO05D006273 1.7e-45 186.0 106 82.1
FAN25G0118 Fragaria x ananassa HOM05D004132 ORTHO05D006273 1.7e-45 186.0 106 82.1
Gohir.A10G126900 Gossypium hirsutum HOM05D004132 ORTHO05D006273 1.7e-45 186.0 106 79.2
Hma1.2p1_0325F.1_g126090 Hydrangea macrophylla HOM05D004132 ORTHO05D006273 1.7e-45 186.0 106 81.1
Nn6g34644 Nelumbo nucifera HOM05D004132 ORTHO05D006273 1.7e-45 186.0 106 80.2
Sabra13G0090900 Salix brachista HOM05D004132 ORTHO05D006273 1.7e-45 186.0 106 80.2
Thhalv10005992m.g Eutrema salsugineum HOM05D004132 ORTHO05D006273 2.2e-45 185.7 106 82.1
PGR102G2051 Punica granatum HOM05D004132 ORTHO05D006273 2.2e-45 185.7 106 80.2
Atru.chr3.3175 Acer truncatum HOM05D004132 ORTHO05D006273 2.9e-45 185.3 106 82.1
CsaV3_6G052840 Cucumis sativus L. HOM05D004132 ORTHO05D006273 2.9e-45 185.3 107 82.2
AL5G39830 Arabidopsis lyrata HOM05D004132 ORTHO05D006273 3.8e-45 184.9 106 81.1
BcaC07g40186 Brassica carinata HOM05D004132 ORTHO05D006273 3.8e-45 184.9 106 82.1
CARHR168500 Cardamine hirsuta HOM05D004132 ORTHO05D006273 3.8e-45 184.9 106 82.1
COL.COLO4_20206 Corchorus olitorius HOM05D004132 ORTHO05D006273 3.8e-45 184.9 106 78.3
Os12g0533700 Oryza sativa ssp. japonica HOM05D004132 ORTHO05D006273 3.8e-45 184.9 106 81.1
SalBow7G0375 Salvia bowleyana HOM05D004132 ORTHO05D006273 3.8e-45 184.9 106 80.2
AagrBONN_evm.TU.Sc2ySwM_344.2605 Anthoceros agrestis HOM05D004132 ORTHO05D006273 6.5e-45 184.1 106 80.2
Sp5g04580 Schrenkiella parvula HOM05D004132 ORTHO05D006273 6.5e-45 184.1 106 80.2
Hund00133 Selenicereus undatus HOM05D004132 ORTHO05D006273 6.5e-45 184.1 106 80.2
Oeu018076.1 Olea europaea HOM05D004132 ORTHO05D006273 1.1e-44 183.3 106 78.3
RcHm_v2.0_Chr3g0486261 Rosa chinensis HOM05D004132 ORTHO05D006273 1.1e-44 183.3 106 82.1
BolC8t50964H Brassica oleracea HOM05D004132 ORTHO05D006273 1.5e-44 183.0 106 82.1
HanXRQChr09g0260401 Helianthus annuus HOM05D004132 ORTHO05D018522 1.5e-44 183.0 107 77.6
Phvul.008G010100 Phaseolus vulgaris HOM05D004132 ORTHO05D006273 1.9e-44 182.6 106 78.3
RcHm_v2.0_Chr5g0020641 Rosa chinensis HOM05D004132 ORTHO05D006273 1.9e-44 182.6 106 80.2
Sed0002662 Sechium edule HOM05D004132 ORTHO05D006273 1.9e-44 182.6 107 81.3
Sc08g0001660 Simmondsia chinensis HOM05D004132 ORTHO05D006273 1.9e-44 182.6 106 78.3
SGA_v2.0_scaffold175G39350 Striga asiatica HOM05D004132 ORTHO05D006273 1.9e-44 182.6 106 78.3
CDE05G2803 Ceratophyllum demersum HOM05D004132 ORTHO05D006273 2.5e-44 182.2 106 80.2
Ciclev10011787m.g Citrus clementina HOM05D004132 ORTHO05D006273 2.5e-44 182.2 106 79.2
DCAR_001290 Daucus carota HOM05D004132 ORTHO05D006273 2.5e-44 182.2 106 77.4
Aa31LG10G12860 Aethionema arabicum HOM05D004132 ORTHO05D006273 3.2e-44 181.8 106 79.2
MSTRG.16365 Avicennia marina HOM05D004132 ORTHO05D006273 3.2e-44 181.8 106 77.4
GSVIVG01020308001 Vitis vinifera HOM05D004132 ORTHO05D018522 3.2e-44 181.8 106 81.1
Sed0008608 Sechium edule HOM05D004132 ORTHO05D006273 4.2e-44 181.4 107 81.3
SGA_v2.0_scaffold298G47699 Striga asiatica HOM05D004132 ORTHO05D006273 5.5e-44 181.0 106 77.4
Zm00001eb371320 Zea mays HOM05D004132 ORTHO05D006273 5.5e-44 181.0 106 79.2
CANSAT78G2113 Cannabis sativa HOM05D004132 ORTHO05D006273 7.2e-44 180.6 106 80.2
Solyc05g056260.2 Solanum lycopersicum HOM05D004132 ORTHO05D006273 7.2e-44 180.6 106 77.4
Sopen05g034650 Solanum pennellii HOM05D004132 ORTHO05D006273 7.2e-44 180.6 106 77.4
PGSC0003DMG400023334 Solanum tuberosum HOM05D004132 ORTHO05D006273 7.2e-44 180.6 106 77.4
Migut.D01293 Erythranthe guttata HOM05D004132 ORTHO05D006273 9.4e-44 180.3 106 77.4
ATR0215G010 Amborella trichopoda HOM05D004132 ORTHO05D006273 1.6e-43 179.5 106 80.2
AT3G58140 Arabidopsis thaliana HOM05D004132 ORTHO05D006273 1.6e-43 179.5 107 80.4
CAN.G1921.3 Capsicum annuum HOM05D004132 ORTHO05D006273 1.6e-43 179.5 106 77.4
Haze_06152 Corylus avellana HOM05D004132 ORTHO05D006273 1.6e-43 179.5 129 69.0
Zm00001eb153980 Zea mays HOM05D004132 ORTHO05D006273 1.6e-43 179.5 106 79.2
SMO361G0681 Selaginella moellendorffii HOM05D004132 ORTHO05D006273 2.1e-43 179.1 106 78.3
TWI59G0283 Tripterygium wilfordii HOM05D004132 ORTHO05D006273 4.7e-43 177.9 106 79.2
Peaxi162Scf00858g00012 Petunia axillaris HOM05D004132 ORTHO05D006273 6.1e-43 177.6 106 76.4
CDE05G2281 Ceratophyllum demersum HOM05D004132 ORTHO05D006273 1.0e-42 176.8 106 78.3
GSVIVG01020339001 Vitis vinifera HOM05D004132 ORTHO05D006273 1.8e-42 176.0 106 77.4
Pp3c5_15740 Physcomitrium patens HOM05D004132 ORTHO05D006273 3.0e-42 175.3 107 76.6
TPR.G28546 Trifolium pratense HOM05D004132 ORTHO05D006273 3.0e-42 175.3 89 91.0
unitig_37.g12049 Utricularia gibba HOM05D004132 ORTHO05D006273 3.0e-42 175.3 106 76.4
Rhsim04G0004400 Rhododendron simsii HOM05D004132 ORTHO05D006273 2.0e-41 172.6 112 75.9
AUR62010256 Chenopodium quinoa HOM05D004132 ORTHO05D006273 5.7e-41 171.0 89 86.5
AUR62013238 Chenopodium quinoa HOM05D004132 ORTHO05D006273 5.7e-41 171.0 89 86.5
Manes.12G056400 Manihot esculenta HOM05D004132 ORTHO05D006273 9.8e-41 170.2 91 84.6
EL10Ac9g22320 Beta vulgaris HOM05D004132 ORTHO05D006273 1.7e-40 169.5 89 84.3
HPP92_026254 Vanilla planifolia HOM05D004132 ORTHO05D006273 4.8e-40 167.9 106 74.5
Hund06337 Selenicereus undatus HOM05D004132 ORTHO05D006273 1.1e-39 166.8 92 79.3
Nitab4.5_0000582g0060 Nicotiana tabacum HOM05D004132 ORTHO05D006273 9.1e-39 163.7 89 82.0
Nitab4.5_0004719g0050 Nicotiana tabacum HOM05D004132 ORTHO05D006273 1.6e-38 162.9 88 81.8
Mapoly0072s0003 Marchantia polymorpha HOM05D004132 ORTHO05D006273 1.0e-37 160.2 107 73.8
CBR_g19753 Chara braunii HOM05D004132 ORTHO05D006273 3.0e-34 148.7 91 72.5
Cre02.g079600 Chlamydomonas reinhardtii HOM05D004132 ORTHO05D006273 1.5e-33 146.4 107 62.6
MCO13G295 Micromonas commoda HOM05D004132 ORTHO05D006273 7.5e-33 144.1 101 69.3
Oeu056054.1 Olea europaea HOM05D004132 ORTHO05D006273 1.2e-30 136.7 77 79.2
PRCOL_00002437 Prasinoderma coloniale HOM05D004132 ORTHO05D006273 1.1e-28 130.2 107 57.0
Dinv25394 Davidia involucrata HOM05D004132 ORTHO05D006273 3.5e-22 108.6 52 90.4
arahy.Tifrunner.gnm1.ann1.0UIU5S Arachis hypogaea HOM05D004132 ORTHO05D018522 3.9e-21 105.1 55 81.8
QL04p095610 Quercus lobata HOM05D004132 ORTHO05D018522 3.9e-21 105.1 165 40.0
Cfa022583 Carpinus fangiana HOM05D004132 ORTHO05D006273 1.2e-19 100.1 120 43.3
HanXRQChr16g0516741 Helianthus annuus HOM05D004132 ORTHO05D018522 4.0e-18 95.1 53 81.1
Haze_26151 Corylus avellana HOM05D004132 ORTHO05D006273 4.4e-17 91.7 102 44.1
TPR.G19642 Trifolium pratense HOM05D004132 ORTHO05D018522 8.3e-16 87.4 56 75.0
RcHm_v2.0_Chr3g0486391 Rosa chinensis HOM05D004132 ORTHO05D006273 9.2e-15 84.0 52 75.0
AL4G21280 Arabidopsis lyrata HOM05D004132 ORTHO05D000124 7.3e-12 74.3 80 48.8
arahy.Tifrunner.gnm1.ann1.DI7635 Arachis hypogaea HOM05D004132 ORTHO05D006273 8.1e-11 70.9 35 80.0
arahy.Tifrunner.gnm1.ann1.S74BYY Arachis hypogaea HOM05D004132 ORTHO05D006273 1.2e-09 67.0 35 80.0


User provided reference genes

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