Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SEGI_34338 Sequoiadendron giganteum HOM05D003776 ORTHO05D004459 0.0e+00 1438.7 734 100.0
Pp3c4_20350 Physcomitrium patens HOM05D003776 ORTHO05D004459 1.2e-247 860.1 701 62.1
Mapoly0052s0095 Marchantia polymorpha HOM05D003776 ORTHO05D004459 2.3e-243 845.9 733 59.3
AagrBONN_evm.TU.Sc2ySwM_228.87 Anthoceros agrestis HOM05D003776 ORTHO05D004459 1.1e-227 793.9 702 58.4
ATR0322G072 Amborella trichopoda HOM05D003776 ORTHO05D004459 1.5e-226 790.0 701 57.3
Nn8g39448 Nelumbo nucifera HOM05D003776 ORTHO05D004459 1.8e-214 750.0 699 56.2
TAR625G0211 Trochodendron aralioides HOM05D003776 ORTHO05D004459 1.5e-213 746.9 699 56.1
Ciclev10007244m.g Citrus clementina HOM05D003776 ORTHO05D004459 6.9e-211 738.0 700 54.9
Cfa003371 Carpinus fangiana HOM05D003776 ORTHO05D004459 1.2e-210 737.3 700 54.6
MD02G1032900 Malus domestica HOM05D003776 ORTHO05D004459 1.5e-210 736.9 700 54.7
Rhsim03G0247900 Rhododendron simsii HOM05D003776 ORTHO05D004459 1.0e-209 734.2 705 54.2
SMO347G0235 Selaginella moellendorffii HOM05D003776 ORTHO05D004459 2.2e-209 733.0 690 55.8
PSO455G0084 Papaver somniferum HOM05D003776 ORTHO05D004459 1.4e-208 730.3 699 55.1
Atru.chr7.1164 Acer truncatum HOM05D003776 ORTHO05D004459 1.9e-208 729.9 703 53.3
Manes.05G119700 Manihot esculenta HOM05D003776 ORTHO05D004459 2.5e-208 729.6 703 54.3
Prupe.7G242500 Prunus persica HOM05D003776 ORTHO05D004459 1.2e-207 727.2 699 53.2
Thecc.09G126200 Theobroma cacao HOM05D003776 ORTHO05D004459 1.6e-207 726.9 698 54.0
Dinv36529 Davidia involucrata HOM05D003776 ORTHO05D004459 1.3e-206 723.8 700 54.3
PSO170G4267 Papaver somniferum HOM05D003776 ORTHO05D004459 1.3e-206 723.8 699 54.5
Sed0006794 Sechium edule HOM05D003776 ORTHO05D004459 1.3e-206 723.8 714 53.1
GSVIVG01015528001 Vitis vinifera HOM05D003776 ORTHO05D004459 3.9e-206 722.2 699 54.5
Aqoxy7G02178 Aquilegia oxysepala HOM05D003776 ORTHO05D004459 6.7e-206 721.5 698 53.9
Solyc12g006480.2 Solanum lycopersicum HOM05D003776 ORTHO05D004459 1.1e-205 720.7 699 54.4
CiPaw.03G244000 Carya illinoinensis HOM05D003776 ORTHO05D004459 1.9e-205 719.9 701 52.9
Potri.006G119600 Populus trichocarpa HOM05D003776 ORTHO05D004459 3.3e-205 719.2 702 53.6
Sopen12g002420 Solanum pennellii HOM05D003776 ORTHO05D004459 4.3e-205 718.8 699 54.2
CANSAT11G0130 Cannabis sativa HOM05D003776 ORTHO05D004459 5.7e-205 718.4 706 53.1
Gorai.001G042000 Gossypium raimondii HOM05D003776 ORTHO05D004459 5.7e-205 718.4 698 53.6
Gohir.A07G035800 Gossypium hirsutum HOM05D003776 ORTHO05D004459 7.4e-205 718.0 698 53.9
Gohir.D07G039800 Gossypium hirsutum HOM05D003776 ORTHO05D004459 1.6e-204 716.8 698 53.4
Sc08g0006640 Simmondsia chinensis HOM05D003776 ORTHO05D004459 6.2e-204 714.9 701 53.9
Aqoxy3G01756 Aquilegia oxysepala HOM05D003776 ORTHO05D004459 1.1e-203 714.1 698 53.9
Cc06_g08530 Coffea canephora HOM05D003776 ORTHO05D004459 1.4e-203 713.8 700 53.6
RcHm_v2.0_Chr2g0088511 Rosa chinensis HOM05D003776 ORTHO05D004459 1.4e-203 713.8 699 53.4
vmacro06129 Vaccinium macrocarpon HOM05D003776 ORTHO05D004459 2.4e-203 713.0 742 50.9
CsaV3_2G002830 Cucumis sativus L. HOM05D003776 ORTHO05D004459 5.3e-203 711.8 699 53.2
Ca_14403_v3 Cicer arietinum L. HOM05D003776 ORTHO05D004459 6.9e-203 711.4 698 53.9
QL02p088328 Quercus lobata HOM05D003776 ORTHO05D004459 2.0e-202 709.9 699 52.5
Eucgr.C04218 Eucalyptus grandis HOM05D003776 ORTHO05D004459 4.5e-202 708.8 698 52.6
FAN26G1438 Fragaria x ananassa HOM05D003776 ORTHO05D004459 1.0e-201 707.6 699 52.5
MELO3C004510.2 Cucumis melo HOM05D003776 ORTHO05D004459 1.7e-201 706.8 701 52.5
FAN23G1640 Fragaria x ananassa HOM05D003776 ORTHO05D004459 2.9e-201 706.1 698 52.3
Glyma.06G222100 Glycine max HOM05D003776 ORTHO05D004459 5.0e-201 705.3 703 52.3
DCAR_017818 Daucus carota HOM05D003776 ORTHO05D004459 6.5e-201 704.9 735 51.7
Lj7C629G11 Lonicera japonica HOM05D003776 ORTHO05D004459 6.5e-201 704.9 703 53.9
FvH4_1g03320 Fragaria vesca HOM05D003776 ORTHO05D004459 2.5e-200 703.0 699 51.9
FAN28G2120 Fragaria x ananassa HOM05D003776 ORTHO05D004459 4.2e-200 702.2 699 51.8
TWI34G1787 Tripterygium wilfordii HOM05D003776 ORTHO05D004459 1.6e-199 700.3 699 52.5
CDE02G1576 Ceratophyllum demersum HOM05D003776 ORTHO05D004459 2.7e-199 699.5 720 51.4
Haze_25580 Corylus avellana HOM05D003776 ORTHO05D004459 1.0e-198 697.6 700 53.0
HanXRQChr10g0315491 Helianthus annuus HOM05D003776 ORTHO05D004459 1.8e-198 696.8 701 52.4
Lsat_1_v5_gn_5_96021 Lactuca sativa HOM05D003776 ORTHO05D004459 5.1e-198 695.3 705 51.9
FAN19G1245 Fragaria x ananassa HOM05D003776 ORTHO05D004459 6.7e-198 694.9 699 51.8
PGR102G3028 Punica granatum HOM05D003776 ORTHO05D004459 6.7e-198 694.9 702 52.1
AUR62013362 Chenopodium quinoa HOM05D003776 ORTHO05D004459 1.5e-197 693.7 711 52.2
Medtr7g099880 Medicago truncatula HOM05D003776 ORTHO05D004459 2.5e-197 693.0 702 52.7
Lalb_Chr11g0072121 Lupinus albus HOM05D003776 ORTHO05D004459 7.4e-197 691.4 701 53.1
AUR62011127 Chenopodium quinoa HOM05D003776 ORTHO05D004459 9.7e-197 691.0 711 51.9
Phvul.009G198200 Phaseolus vulgaris HOM05D003776 ORTHO05D004459 2.2e-196 689.9 698 51.4
Os02g0202250 Oryza sativa ssp. japonica HOM05D003776 ORTHO05D004459 1.1e-195 687.6 700 52.0
VMungo1309G0107 Vigna mungo HOM05D003776 ORTHO05D004459 1.1e-195 687.6 703 51.9
Lj3g0001115 Lotus japonicus HOM05D003776 ORTHO05D004459 1.8e-195 686.8 698 52.0
TPR.G21471 Trifolium pratense HOM05D003776 ORTHO05D004459 5.3e-195 685.3 702 52.3
ECA234G1804 Erigeron canadensis HOM05D003776 ORTHO05D004459 4.5e-194 682.2 702 51.1
Psat1g024680 Pisum sativum HOM05D003776 ORTHO05D004459 5.9e-194 681.8 702 51.7
Nitab4.5_0002658g0150 Nicotiana tabacum HOM05D003776 ORTHO05D004459 1.0e-193 681.0 699 52.5
THA.LOC104808989 Tarenaya hassleriana HOM05D003776 ORTHO05D004459 1.7e-193 680.2 699 51.4
EL10Ac8g18652 Beta vulgaris HOM05D003776 ORTHO05D004459 5.0e-193 678.7 700 52.9
Hund09133 Selenicereus undatus HOM05D003776 ORTHO05D004459 5.0e-193 678.7 713 51.9
Peaxi162Scf01211g00016 Petunia axillaris HOM05D003776 ORTHO05D004459 5.5e-192 675.2 725 50.2
Sabra06G0094200 Salix brachista HOM05D003776 ORTHO05D004459 1.4e-190 670.6 776 47.8
Carub.0008s1091 Capsella rubella HOM05D003776 ORTHO05D004459 3.0e-190 669.5 703 51.5
MSTRG.19598 Avicennia marina HOM05D003776 ORTHO05D004459 1.1e-189 667.5 699 51.2
AT5G51200 Arabidopsis thaliana HOM05D003776 ORTHO05D004459 5.7e-189 665.2 702 51.1
CBR_g37692 Chara braunii HOM05D003776 ORTHO05D004459 2.8e-188 662.9 707 51.3
Aa31LG5G9110 Aethionema arabicum HOM05D003776 ORTHO05D004459 1.1e-187 661.0 703 50.8
Sp4g09050 Schrenkiella parvula HOM05D003776 ORTHO05D004459 1.4e-187 660.6 702 50.6
Zm00001eb235620 Zea mays HOM05D003776 ORTHO05D004459 2.4e-187 659.8 699 50.4
AL8G25470 Arabidopsis lyrata HOM05D003776 ORTHO05D004459 3.1e-187 659.4 702 50.7
CARHR118630 Cardamine hirsuta HOM05D003776 ORTHO05D004459 5.9e-186 655.2 700 50.1
Thhalv10002339m.g Eutrema salsugineum HOM05D003776 ORTHO05D004459 2.2e-185 653.3 701 49.9
Duzib168G2222 Durio zibethinus HOM05D003776 ORTHO05D004459 2.9e-185 652.9 593 55.3
Migut.J01158 Erythranthe guttata HOM05D003776 ORTHO05D004459 3.2e-184 649.4 708 49.4
C07p25670 Brassica napus HOM05D003776 ORTHO05D004459 3.6e-183 646.0 703 49.8
BolC7t43085H Brassica oleracea HOM05D003776 ORTHO05D004459 3.6e-183 646.0 703 49.8
A07p17720 Brassica napus HOM05D003776 ORTHO05D004459 1.0e-182 644.4 703 49.6
Lalb_Chr08g0234811 Lupinus albus HOM05D003776 ORTHO05D004459 1.0e-182 644.4 652 52.8
BraA07t29494Z Brassica rapa HOM05D003776 ORTHO05D004459 1.3e-180 637.5 719 48.5
ClCG11G003010 Citrullus lanatus HOM05D003776 ORTHO05D004459 1.0e-177 627.9 699 48.9
Duzib187G1323 Durio zibethinus HOM05D003776 ORTHO05D004459 4.8e-172 609.0 708 47.6
Oeu055885.1 Olea europaea HOM05D003776 ORTHO05D004459 7.2e-160 568.5 544 54.2
Nitab4.5_0008846g0010 Nicotiana tabacum HOM05D003776 ORTHO05D004459 1.4e-155 554.3 698 45.4
arahy.Tifrunner.gnm1.ann1.GK8SHH Arachis hypogaea HOM05D003776 ORTHO05D004459 8.6e-145 518.5 554 50.5
Cpa.g.sc75.31 Carica papaya HOM05D003776 ORTHO05D004459 4.0e-142 509.6 513 51.1
HPP92_008667 Vanilla planifolia HOM05D003776 ORTHO05D004459 2.1e-127 460.7 561 46.7
vmacro22117 Vaccinium macrocarpon HOM05D003776 ORTHO05D004459 2.5e-120 437.2 512 48.0
Hma1.2p1_0018F.1_g012430 Hydrangea macrophylla HOM05D003776 ORTHO05D004459 1.3e-116 424.9 499 48.5
Actinidia26393 Actinidia chinensis HOM05D003776 ORTHO05D004459 1.1e-110 405.2 360 57.5
Ah.09g226220 Amaranthus hybridus HOM05D003776 ORTHO05D004459 1.3e-100 371.7 393 52.4
COL.COLO4_35084 Corchorus olitorius HOM05D003776 ORTHO05D004459 1.0e-92 345.5 305 54.4
RcHm_v2.0_Chr2g0152361 Rosa chinensis HOM05D003776 ORTHO05D004459 9.7e-80 302.4 696 31.9
HPP92_008648 Vanilla planifolia HOM05D003776 ORTHO05D004459 7.7e-77 292.7 356 46.3
CAN.G816.2 Capsicum annuum HOM05D003776 ORTHO05D004459 1.4e-73 282.0 300 51.3
RcHm_v2.0_Chr2g0152391 Rosa chinensis HOM05D003776 ORTHO05D004459 8.8e-65 252.7 695 28.3
Lsat_1_v5_gn_7_7080 Lactuca sativa HOM05D003776 ORTHO05D004459 6.3e-63 246.5 298 46.6
Hma1.2p1_0018F.1_g012440 Hydrangea macrophylla HOM05D003776 ORTHO05D004459 3.3e-56 224.2 168 61.9
Psat0s3979g0040 Pisum sativum HOM05D003776 ORTHO05D004459 9.1e-54 216.1 210 50.5
Ah.09g226230 Amaranthus hybridus HOM05D003776 ORTHO05D004459 1.5e-51 208.8 251 43.0
SEGI_04425 Sequoiadendron giganteum HOM05D003776 ORTHO05D004459 4.7e-50 203.8 120 85.8
Zm00001eb121860 Zea mays HOM05D003776 ORTHO05D005656 1.5e-40 172.2 179 54.2
Pp3c23_3420 Physcomitrium patens HOM05D003776 ORTHO05D004459 9.2e-38 162.9 139 54.0
RcHm_v2.0_Chr4g0403131 Rosa chinensis HOM05D003776 ORTHO05D004459 1.0e-36 159.5 226 43.4
RcHm_v2.0_Chr4g0403161 Rosa chinensis HOM05D003776 ORTHO05D004459 1.0e-36 159.5 226 43.4
Lsat_1_v5_gn_3_39400 Lactuca sativa HOM05D003776 ORTHO05D004459 2.3e-36 158.3 229 40.6
Pp3c20_13260 Physcomitrium patens HOM05D003776 ORTHO05D004459 5.6e-35 153.7 157 50.3
Psat0s1308g0040 Pisum sativum HOM05D002636 ORTHO05D004459 3.2e-30 137.9 121 57.0
FvH4_6g38782 Fragaria vesca HOM05D003776 ORTHO05D004459 2.7e-29 134.8 340 30.6
Lsat_1_v5_gn_5_62781 Lactuca sativa HOM05D003776 ORTHO05D004459 6.2e-26 123.6 313 28.4
FvH4_6g38790 Fragaria vesca HOM05D003776 ORTHO05D004459 1.0e-25 122.9 145 43.4
Psat5g250280 Pisum sativum HOM05D003776 ORTHO05D004459 1.8e-25 122.1 97 60.8
Psat7g006280 Pisum sativum HOM05D003776 ORTHO05D004459 2.6e-24 118.2 126 53.2
ECA246G1679 Erigeron canadensis HOM05D003776 ORTHO05D004459 5.6e-19 100.5 159 37.7
RcHm_v2.0_Chr3g0479611 Rosa chinensis HOM05D003776 ORTHO05D004459 2.2e-15 88.6 105 45.7
MCO11G810 Micromonas commoda HOM05D003776 ORTHO05D004459 3.5e-13 81.3 400 23.0
PRCOL_00003394 Prasinoderma coloniale HOM05D003776 ORTHO05D004459 7.8e-13 80.1 631 23.1
SEGI_27908 Sequoiadendron giganteum HOM05D003776 ORTHO05D004459 7.8e-13 80.1 43 83.7
SEGI_26904 Sequoiadendron giganteum HOM05D000464 ORTHO05D006292 1.3e-12 79.3 45 80.0
Cpa.g.sc75.30 Carica papaya HOM05D003776 ORTHO05D004459 1.7e-12 79.0 100 45.0
arahy.Tifrunner.gnm1.ann1.6DBV70 Arachis hypogaea HOM05D003776 ORTHO05D004459 2.3e-12 78.6 100 47.0
MD16G1253500 Malus domestica HOM05D003776 ORTHO05D004459 1.1e-11 76.3 108 42.6
Peaxi162Scf00062g02012 Petunia axillaris HOM05D003776 ORTHO05D004459 3.4e-08 64.7 96 38.5
arahy.Tifrunner.gnm1.ann1.HIW0J1 Arachis hypogaea HOM05D003776 ORTHO05D004459 7.6e-08 63.5 62 48.4
Peaxi162Scf00574g00919 Petunia axillaris HOM05D003776 ORTHO05D004459 9.9e-08 63.2 83 42.2


User provided reference genes

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