Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SEGI_34300 Sequoiadendron giganteum HOM05D001654 ORTHO05D008085 1.6e-197 692.6 352 100.0
Pp3c2_23200 Physcomitrium patens HOM05D001654 ORTHO05D008085 3.0e-79 299.7 315 51.4
Mapoly0190s0016 Marchantia polymorpha HOM05D001654 ORTHO05D008085 3.3e-78 296.2 303 52.1
CBR_g4584 Chara braunii HOM05D001654 ORTHO05D008085 4.2e-73 279.3 349 46.4
Cre17.g710800 Chlamydomonas reinhardtii HOM05D001654 ORTHO05D008085 1.2e-38 164.9 348 33.3
PRCOL_00005187 Prasinoderma coloniale HOM05D001654 ORTHO05D008085 2.3e-34 150.6 337 32.3
CBR_g39901 Chara braunii HOM05D001654 ORTHO05D008085 1.5e-22 111.3 133 46.6
PGSC0003DMG400009020 Solanum tuberosum HOM05D001654 ORTHO05D008085 2.1e-11 74.3 66 57.6
CAN.G293.5 Capsicum annuum HOM05D001654 ORTHO05D008085 2.7e-11 73.9 66 56.1
PSO210G1196 Papaver somniferum HOM05D001654 ORTHO05D008085 6.0e-11 72.8 67 53.7
arahy.Tifrunner.gnm1.ann1.T1V4H7 Arachis hypogaea HOM05D001654 ORTHO05D008085 1.3e-10 71.6 50 72.0
arahy.Tifrunner.gnm1.ann1.ZIY6TR Arachis hypogaea HOM05D001654 ORTHO05D008085 1.3e-10 71.6 56 66.1
ATR0693G051 Amborella trichopoda HOM05D001654 ORTHO05D008085 3.0e-10 70.5 49 69.4
Eucgr.H00910 Eucalyptus grandis HOM05D001654 ORTHO05D008085 3.9e-10 70.1 49 69.4
Manes.05G012600 Manihot esculenta HOM05D001654 ORTHO05D008085 3.9e-10 70.1 57 61.4
THA.LOC104801311 Tarenaya hassleriana HOM05D001654 ORTHO05D008085 3.9e-10 70.1 49 67.3
Nn3g21818 Nelumbo nucifera HOM05D001654 ORTHO05D008085 5.1e-10 69.7 49 67.3
Peaxi162Scf00770g00013 Petunia axillaris HOM05D001654 ORTHO05D008085 5.1e-10 69.7 65 53.8
MSTRG.21710 Avicennia marina HOM05D001654 ORTHO05D008085 6.6e-10 69.3 65 53.8
CANSAT25G2218 Cannabis sativa HOM05D001654 ORTHO05D008085 6.6e-10 69.3 57 57.9
MBI19_g03284_MAGBIO Magnolia biondii HOM05D001654 ORTHO05D008085 6.6e-10 69.3 49 67.3
HPP92_001223 Vanilla planifolia HOM05D000443 ORTHO05D008085 6.6e-10 69.3 49 67.3
AT4G01940 Arabidopsis thaliana HOM05D001654 ORTHO05D008085 8.6e-10 68.9 50 64.0
COL.COLO4_23188 Corchorus olitorius HOM05D001654 ORTHO05D008085 1.1e-09 68.6 49 67.3
Thhalv10028839m.g Eutrema salsugineum HOM05D001654 ORTHO05D008085 1.1e-09 68.6 49 65.3
Hma1.2p1_0965F.1_g242110 Hydrangea macrophylla HOM05D001654 ORTHO05D008085 1.1e-09 68.6 71 46.5
Solyc01g079220.4 Solanum lycopersicum HOM05D001654 ORTHO05D008085 1.1e-09 68.6 70 54.3
Sopen01g031000 Solanum pennellii HOM05D001654 ORTHO05D008085 1.1e-09 68.6 70 54.3
Gohir.A12G123100 Gossypium hirsutum HOM05D001654 ORTHO05D008085 1.5e-09 68.2 57 56.1
Glyma.19G218400 Glycine max HOM05D001654 ORTHO05D008085 1.9e-09 67.8 49 65.3
Gohir.D12G126700 Gossypium hirsutum HOM05D001654 ORTHO05D008085 1.9e-09 67.8 57 56.1
Gorai.008G137600 Gossypium raimondii HOM05D001654 ORTHO05D008085 1.9e-09 67.8 57 56.1
AL6G51350 Arabidopsis lyrata HOM05D001654 ORTHO05D008085 2.5e-09 67.4 49 63.3
BcaB01g02401 Brassica carinata HOM05D001654 ORTHO05D008085 2.5e-09 67.4 49 63.3
BcaC01g06789 Brassica carinata HOM05D001654 ORTHO05D008085 2.5e-09 67.4 49 63.3
A03p31360 Brassica napus HOM05D001654 ORTHO05D008085 2.5e-09 67.4 49 63.3
C03p38270 Brassica napus HOM05D001654 ORTHO05D008085 2.5e-09 67.4 49 63.3
BolC3t16108H Brassica oleracea HOM05D001654 ORTHO05D008085 2.5e-09 67.4 49 63.3
BraA03t12316Z Brassica rapa HOM05D001654 ORTHO05D008085 2.5e-09 67.4 49 63.3
Cpa.g.sc11.97 Carica papaya HOM05D001170 ORTHO05D008741 2.5e-09 67.4 107 40.2
Sp6g01820 Schrenkiella parvula HOM05D001654 ORTHO05D008085 2.5e-09 67.4 49 63.3
TWI14G0226 Tripterygium wilfordii HOM05D001654 ORTHO05D008085 2.5e-09 67.4 57 56.1
TAR365G0959 Trochodendron aralioides HOM05D001654 ORTHO05D008085 2.5e-09 67.4 49 65.3
Cfa001520 Carpinus fangiana HOM05D001654 ORTHO05D008085 3.3e-09 67.0 49 63.3
CiPaw.07G120500 Carya illinoinensis HOM05D001654 ORTHO05D008085 3.3e-09 67.0 49 63.3
Lj1g0022661 Lotus japonicus HOM05D001654 ORTHO05D008085 3.3e-09 67.0 49 67.3
Medtr7g109850 Medicago truncatula HOM05D001654 ORTHO05D008085 3.3e-09 67.0 57 56.1
Psat3g019000 Pisum sativum HOM05D001654 ORTHO05D008085 3.3e-09 67.0 57 56.1
SalBow3G3994 Salvia bowleyana HOM05D001654 ORTHO05D008085 3.3e-09 67.0 65 52.3
VMungo1383G1372 Vigna mungo HOM05D001654 ORTHO05D008085 3.3e-09 67.0 49 65.3
Atru.chr5.945 Acer truncatum HOM05D001654 ORTHO05D008085 4.3e-09 66.6 57 57.9
Actinidia25865 Actinidia chinensis HOM05D001654 ORTHO05D008085 4.3e-09 66.6 49 65.3
Ca_09225_v3 Cicer arietinum L. HOM05D001654 ORTHO05D008085 4.3e-09 66.6 49 63.3
FvH4_1g26790 Fragaria vesca HOM05D001654 ORTHO05D008085 4.3e-09 66.6 49 65.3
FAN19G0421 Fragaria x ananassa HOM05D001654 ORTHO05D008085 4.3e-09 66.6 49 65.3
Medtr8g038785 Medicago truncatula HOM05D000371 ORTHO05D001484 4.3e-09 66.6 57 56.1
Rhsim01G0292400 Rhododendron simsii HOM05D001654 ORTHO05D008085 4.3e-09 66.6 50 66.0
Aqoxy2G02641 Aquilegia oxysepala HOM05D001654 ORTHO05D008085 5.6e-09 66.2 49 63.3
Carub.0006s3529 Capsella rubella HOM05D001654 ORTHO05D008085 5.6e-09 66.2 49 61.2
Haze_17021 Corylus avellana HOM05D001654 ORTHO05D008085 5.6e-09 66.2 49 63.3
Duzib138G0592 Durio zibethinus HOM05D001654 ORTHO05D008085 5.6e-09 66.2 53 60.4
FAN23G2580 Fragaria x ananassa HOM05D001654 ORTHO05D008085 5.6e-09 66.2 49 65.3
FAN28G2334 Fragaria x ananassa HOM05D001654 ORTHO05D008085 5.6e-09 66.2 49 65.3
Aa31LG5G1590 Aethionema arabicum HOM05D001654 ORTHO05D008085 7.3e-09 65.9 68 50.0
Ciclev10022131m.g Citrus clementina HOM05D001654 ORTHO05D008085 7.3e-09 65.9 49 61.2
ECA247G3538 Erigeron canadensis HOM05D001654 ORTHO05D008085 7.3e-09 65.9 49 63.3
Nitab4.5_0010752g0010 Nicotiana tabacum HOM05D001654 ORTHO05D008085 7.3e-09 65.9 69 49.3
PSO761G0367 Papaver somniferum HOM05D001654 ORTHO05D008085 7.3e-09 65.9 44 70.5
PGR083G0503 Punica granatum HOM05D001654 ORTHO05D008085 7.3e-09 65.9 49 61.2
QL12p018829 Quercus lobata HOM05D001654 ORTHO05D008085 7.3e-09 65.9 49 61.2
CDE11G0536 Ceratophyllum demersum HOM05D001654 ORTHO05D008085 9.5e-09 65.5 49 63.3
Hma1.2p1_0965F.1_g242120 Hydrangea macrophylla HOM05D001654 ORTHO05D008085 9.5e-09 65.5 49 63.3
Phvul.001G214800 Phaseolus vulgaris HOM05D001654 ORTHO05D008085 9.5e-09 65.5 49 63.3
Potri.002G192200 Populus trichocarpa HOM05D001654 ORTHO05D008085 9.5e-09 65.5 57 57.9
TPR.G4072 Trifolium pratense HOM05D001654 ORTHO05D008085 9.5e-09 65.5 57 54.4
EL10As5g23607 Beta vulgaris HOM05D001654 ORTHO05D008085 1.2e-08 65.1 64 46.9
AUR62011756 Chenopodium quinoa HOM05D001654 ORTHO05D008085 1.2e-08 65.1 64 46.9
Dinv00086 Davidia involucrata HOM05D001654 ORTHO05D008085 1.2e-08 65.1 49 65.3
Dinv12117 Davidia involucrata HOM05D001654 ORTHO05D008085 1.2e-08 65.1 49 65.3
Lsat_1_v5_gn_8_76661 Lactuca sativa HOM05D001654 ORTHO05D008085 1.2e-08 65.1 49 61.2
Nitab4.5_0000222g0090 Nicotiana tabacum HOM05D001654 ORTHO05D008085 1.2e-08 65.1 69 47.8
SMO144G0019 Selaginella moellendorffii HOM05D001654 ORTHO05D008085 1.2e-08 65.1 50 62.0
vmacro15099 Vaccinium macrocarpon HOM05D001654 ORTHO05D008085 1.2e-08 65.1 49 63.3
GSVIVG01028158001 Vitis vinifera HOM05D001654 ORTHO05D008085 1.2e-08 65.1 49 63.3
HanXRQChr10g0284781 Helianthus annuus HOM05D001654 ORTHO05D008085 1.6e-08 64.7 66 48.5
Lalb_Chr04g0260031 Lupinus albus HOM05D001654 ORTHO05D008085 1.6e-08 64.7 50 62.0
Os03g0314700 Oryza sativa ssp. japonica HOM05D001654 ORTHO05D008085 1.6e-08 64.7 49 63.3
Prupe.6G008100 Prunus persica HOM05D001654 ORTHO05D008085 1.6e-08 64.7 64 54.7
Sc04g0010540 Simmondsia chinensis HOM05D001654 ORTHO05D008085 1.6e-08 64.7 50 62.0
CDE05G0483 Ceratophyllum demersum HOM05D001654 ORTHO05D008085 2.1e-08 64.3 49 61.2
Migut.D00055 Erythranthe guttata HOM05D001654 ORTHO05D008085 2.1e-08 64.3 65 50.8
Prupe.3G007000 Prunus persica HOM05D001654 ORTHO05D008085 2.1e-08 64.3 49 61.2
SMO118G0472 Selaginella moellendorffii HOM05D001654 ORTHO05D008085 2.1e-08 64.3 50 62.0
CARHR249740 Cardamine hirsuta HOM05D001654 ORTHO05D008085 2.8e-08 63.9 49 59.2
RcHm_v2.0_Chr3g0487011 Rosa chinensis HOM05D001654 ORTHO05D008085 2.8e-08 63.9 49 61.2
Thecc.01G318700 Theobroma cacao HOM05D001654 ORTHO05D008085 2.8e-08 63.9 49 61.2
Cc01_g21660 Coffea canephora HOM05D001654 ORTHO05D008085 3.6e-08 63.5 37 75.7
Cpa.g.sc18.96 Carica papaya HOM05D001654 ORTHO05D008085 4.7e-08 63.2 48 62.5
AUR62024601 Chenopodium quinoa HOM05D001654 ORTHO05D008085 4.7e-08 63.2 64 45.3
MD17G1279000 Malus domestica HOM05D001654 ORTHO05D008085 4.7e-08 63.2 49 59.2
SGA_v2.0_scaffold80G25718 Striga asiatica HOM05D001654 ORTHO05D008085 4.7e-08 63.2 38 78.9
Zm00001eb015070 Zea mays HOM05D001654 ORTHO05D008085 6.2e-08 62.8 49 61.2
ClCG09G004900 Citrullus lanatus HOM05D001654 ORTHO05D008085 8.1e-08 62.4 49 61.2
Potri.014G117700 Populus trichocarpa HOM05D001654 ORTHO05D008085 8.1e-08 62.4 57 54.4
Sabra14G0087300 Salix brachista HOM05D001654 ORTHO05D008085 8.1e-08 62.4 57 54.4
MELO3C015905.2 Cucumis melo HOM05D001654 ORTHO05D008085 1.1e-07 62.0 49 61.2
CsaV3_7G030190 Cucumis sativus L. HOM05D001654 ORTHO05D008085 1.1e-07 62.0 49 61.2
Sed0023884 Sechium edule HOM05D001654 ORTHO05D008085 1.4e-07 61.6 67 49.3
Lj2A1210G30 Lonicera japonica HOM05D001654 ORTHO05D008085 1.8e-07 61.2 49 59.2
Oeu008488.1 Olea europaea HOM05D001654 ORTHO05D008085 1.8e-07 61.2 72 48.6
Hund02947 Selenicereus undatus HOM05D001654 ORTHO05D008085 1.8e-07 61.2 58 50.0
Ciclev10012321m.g Citrus clementina HOM05D001170 ORTHO05D008741 3.1e-07 60.5 94 37.2
unitig_62.g23905 Utricularia gibba HOM05D001654 ORTHO05D008085 3.1e-07 60.5 50 58.0
Dinv09288 Davidia involucrata HOM05D001170 ORTHO05D008741 5.2e-07 59.7 111 32.4
Actinidia05360 Actinidia chinensis HOM05D001170 ORTHO05D008741 6.8e-07 59.3 85 38.8
RcHm_v2.0_Chr4g0387891 Rosa chinensis HOM05D001654 ORTHO05D008085 1.5e-06 58.2 41 63.4
CAN.G133.10 Capsicum annuum HOM05D001170 ORTHO05D008741 2.0e-06 57.8 111 33.3
Gohir.A09G166100 Gossypium hirsutum HOM05D001170 ORTHO05D008741 2.0e-06 57.8 85 36.5
PGSC0003DMG400004454 Solanum tuberosum HOM05D001170 ORTHO05D008741 2.0e-06 57.8 111 34.2
Zm00001eb163210 Zea mays HOM05D001170 ORTHO05D008741 2.0e-06 57.8 85 35.3
CSS0008228 Camellia sinensis var. sinensis HOM05D001654 ORTHO05D008085 2.6e-06 57.4 33 81.8
CSS0009561 Camellia sinensis var. sinensis HOM05D001170 ORTHO05D008741 2.6e-06 57.4 111 30.6
Haze_20986 Corylus avellana HOM05D001170 ORTHO05D008741 2.6e-06 57.4 87 34.5
Gohir.D09G161700 Gossypium hirsutum HOM05D001170 ORTHO05D008741 2.6e-06 57.4 85 36.5
Gorai.006G183400 Gossypium raimondii HOM05D001170 ORTHO05D008741 2.6e-06 57.4 85 36.5
TAR623G1719 Trochodendron aralioides HOM05D001594 ORTHO05D002862 2.6e-06 57.4 87 35.6
Atru.chr8.2265 Acer truncatum HOM05D001170 ORTHO05D008741 3.4e-06 57.0 85 36.5
Mapoly0001s0103 Marchantia polymorpha HOM05D001170 ORTHO05D008741 3.4e-06 57.0 94 37.2
vmacro08884 Vaccinium macrocarpon HOM05D001170 ORTHO05D008741 3.4e-06 57.0 111 29.7
SEGI_12455 Sequoiadendron giganteum HOM05D011033 ORTHO05D015595 4.4e-06 56.6 123 35.0
PGR031G0399 Punica granatum HOM05D001170 ORTHO05D008741 5.8e-06 56.2 94 31.9
Cfa017188 Carpinus fangiana HOM05D001170 ORTHO05D008741 7.6e-06 55.8 87 33.3
MBI15_g13301_MAGBIO Magnolia biondii HOM05D001170 ORTHO05D008741 7.6e-06 55.8 85 37.6
RcHm_v2.0_Chr1g0346861 Rosa chinensis HOM05D001654 ORTHO05D008085 7.6e-06 55.8 41 61.0
GSVIVG01011178001 Vitis vinifera HOM05D001170 ORTHO05D008741 7.6e-06 55.8 111 27.9
EL10Ac5g12545 Beta vulgaris HOM05D001343 ORTHO05D002008 9.9e-06 55.5 85 34.1


User provided reference genes

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