Notice (8): Undefined variable: source_groups_information [APP/View/Tools/similarity_heatmap.ctp, line 77]Code Context <label>Source(s)</label> <select class='form form-select' name='ontology_source_group' id='ontology_source_group'> <?php foreach ($source_groups_information['available'] as $source_group_id) : ?> $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Tools/similarity_heatmap.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D001654', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '391', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'gene_selection' => array( 'parameters' => array( (int) 0 => array( [maximum depth reached] ) ), 'genes' => array( 'A01p17190' => 'bna', 'A03p27570' => 'bna', 'A03p31360' => 'bna', 'A10p08660' => 'bna', 'Aa31LG3G290' => 'aar', 'Aa31LG3G300' => 'aar', 'Aa31LG3G6750' => 'aar', 'Aa31LG5G1590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4644' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1124' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1480' => 'aag', 'Actinidia02507' => 'ach', 'Actinidia06471' => 'ach', 'Actinidia25865' => 'ach', 'Actinidia26164' => 'ach', 'Ah.09g230010' => 'amhyb', 'AL6G51350' => 'aly', 'AL7G27100' => 'aly', 'AL8G23890' => 'aly', 'Aqoxy2G02641' => 'aox', 'Aqoxy6G00125' => 'aox', 'Aqoxy7G02984' => 'aox', 'arahy.Tifrunner.gnm1.ann1.G1RM5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKF9WG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS0PB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1V4H7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UW8EWK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZIY6TR' => 'arhy', 'AT4G01940' => 'ath', 'AT4G25910' => 'ath', 'AT5G49940' => 'ath', 'ATR0580G236' => 'atr', 'ATR0693G051' => 'atr', 'ATR1134G081' => 'atr', 'Atru.chr5.945' => 'acertr', 'Atru.chr6.763' => 'acertr', 'Atru.chr7.837' => 'acertr', 'AUR62011756' => 'cqu', 'AUR62021316' => 'cqu', 'AUR62022780' => 'cqu', 'AUR62024601' => 'cqu', 'AUR62033233' => 'cqu', 'BcaB01g02401' => 'bca', 'BcaB01g02931' => 'bca', 'BcaB01g02932' => 'bca', 'BcaB08g35376' => 'bca', 'BcaC01g04843' => 'bca', 'BcaC01g06789' => 'bca', 'BcaC04g20838' => 'bca', 'BcaC09g50733' => 'bca', 'BcaNung03768' => 'bca', 'BolC1t02071H' => 'bol', 'BolC3t15650H' => 'bol', 'BolC3t16108H' => 'bol', 'BolC9t56717H' => 'bol', 'BraA01t01675Z' => 'bra', 'BraA03t11970Z' => 'bra', 'BraA03t12316Z' => 'bra', 'BraSC37t46137Z' => 'bra', 'C01p21510' => 'bna', 'C03p33280' => 'bna', 'C03p38270' => 'bna', 'C09p38620' => 'bna', 'CAN.G293.5' => 'can', 'CAN.G798.52' => 'can', 'CAN.G97.7' => 'can', 'CANSAT11G1414' => 'cansat', 'CANSAT25G2218' => 'cansat', 'CANSAT54G0695' => 'cansat', 'CARHR233380' => 'chi', 'CARHR249740' => 'chi', 'CARHR258780' => 'chi', 'Carub.0006s3529' => 'cru', 'Carub.0007s1504' => 'cru', 'Carub.0008s0982' => 'cru', 'Ca_00046_v3' => 'car', 'Ca_02035_v3' => 'car', 'Ca_09225_v3' => 'car', 'CBR_g3282' => 'cbr', 'CBR_g39901' => 'cbr', 'CBR_g4584' => 'cbr', 'Cc01_g21660' => 'ccan', 'Cc02_g23000' => 'ccan', 'Cc05_g08650' => 'ccan', 'CDE02G0161' => 'cde', 'CDE05G0483' => 'cde', 'CDE07G0634' => 'cde', 'CDE08G1347' => 'cde', 'CDE11G0536' => 'cde', 'Cfa001520' => 'cfa', 'Cfa004509' => 'cfa', 'Cfa013406' => 'cfa', 'Ciclev10002359m.g' => 'ccl', 'Ciclev10009375m.g' => 'ccl', 'Ciclev10022131m.g' => 'ccl', 'CiPaw.01G010200' => 'cil', 'CiPaw.05G005900' => 'cil', 'CiPaw.06G173000' => 'cil', 'CiPaw.07G120500' => 'cil', 'CiPaw.07G194400' => 'cil', 'CiPaw.10G108200' => 'cil', 'ClCG02G019990' => 'cla', 'ClCG09G004900' => 'cla', 'ClCG09G022880' => 'cla', 'ClCG10G007540' => 'cla', 'ClCG11G011960' => 'cla', 'ClCG11G013330' => 'cla', 'COL.COLO4_06000' => 'col', 'COL.COLO4_17741' => 'col', 'COL.COLO4_23188' => 'col', 'Cpa.g.c34934.1' => 'cpa', 'Cpa.g.sc18.96' => 'cpa', 'Cpa.g.sc18.98' => 'cpa', 'Cpa.g.sc30.41' => 'cpa', 'Cre17.g710800' => 'cre', 'Cre18.g748447' => 'cre', 'CsaV3_2G008550' => 'csa', 'CsaV3_5G029830' => 'csa', 'CsaV3_6G016690' => 'csa', 'CsaV3_7G030190' => 'csa', 'CSS0008228' => 'camsi', 'CSS0009235' => 'camsi', 'CSS0034043' => 'camsi', 'CSS0038161' => 'camsi', 'CSS0043588' => 'camsi', 'DCAR_002908' => 'dca', 'DCAR_014691' => 'dca', 'DCAR_017986' => 'dca', 'DCAR_029272' => 'dca', 'Dinv00086' => 'din', 'Dinv07475' => 'din', 'Dinv12117' => 'din', 'Dinv19399' => 'din', 'Dinv19562' => 'din', 'Duzib052G1033' => 'dzi', 'Duzib138G0592' => 'dzi', 'Duzib150G1318' => 'dzi', 'Duzib170G0717' => 'dzi', 'Duzib248G1383' => 'dzi', 'ECA236G3292' => 'eca', 'ECA240G1393' => 'eca', 'ECA247G3538' => 'eca', 'EL10Ac1g02279' => 'bvu', 'EL10Ac4g08741' => 'bvu', 'EL10Ac5g11549' => 'bvu', 'EL10Ac5g11749' => 'bvu', 'EL10Ac8g18301' => 'bvu', 'EL10As5g23607' => 'bvu', 'Eucgr.C02388' => 'egr', 'Eucgr.G00348' => 'egr', 'Eucgr.H00910' => 'egr', 'FAN01G0458' => 'fan', 'FAN01G1194' => 'fan', 'FAN03G0897' => 'fan', 'FAN06G2452' => 'fan', 'FAN07G2725' => 'fan', 'FAN10G2163' => 'fan', 'FAN12G1553' => 'fan', 'FAN19G0421' => 'fan', 'FAN23G2580' => 'fan', 'FAN28G2334' => 'fan', 'FvH4_1g26790' => 'fve', 'FvH4_4g07770' => 'fve', 'FvH4_7g01380' => 'fve', 'Glyma.09G056800' => 'gma', 'Glyma.12G167700' => 'gma', 'Glyma.15G163100' => 'gma', 'Glyma.19G218400' => 'gma', 'Gohir.A01G182600' => 'ghi', 'Gohir.A04G132800' => 'ghi', 'Gohir.A05G003800' => 'ghi', 'Gohir.A12G123100' => 'ghi', 'Gohir.D01G173700' => 'ghi', 'Gohir.D04G176400' => 'ghi', 'Gohir.D05G004200' => 'ghi', 'Gohir.D12G126700' => 'ghi', 'Gorai.002G215800' => 'gra', 'Gorai.008G137600' => 'gra', 'Gorai.009G003900' => 'gra', 'Gorai.012G168000' => 'gra', 'GSVIVG01023274001' => 'vvi', 'GSVIVG01028158001' => 'vvi', 'GSVIVG01029242001' => 'vvi', 'HanXRQChr07g0202151' => 'han', 'HanXRQChr10g0284781' => 'han', 'HanXRQChr10g0294531' => 'han', 'Haze_10065' => 'cav', 'Haze_10068' => 'cav', 'Haze_17021' => 'cav', 'Haze_21951' => 'cav', 'Hma1.2p1_0427F.1_g150720' => 'hma', 'Hma1.2p1_0965F.1_g242110' => 'hma', 'Hma1.2p1_0965F.1_g242120' => 'hma', 'Hma1.2p1_1086F.1_g255470' => 'hma', 'HPP92_010771' => 'vpl', 'HPP92_019385' => 'vpl', 'Hund02947' => 'sun', 'Hund09037' => 'sun', 'Hund15487' => 'sun', 'Lalb_Chr04g0260031' => 'lal', 'Lalb_Chr04g0264711' => 'lal', 'Lalb_Chr15g0084031' => 'lal', 'Lj1g0022661' => 'lja', 'Lj2A1210G30' => 'lonja', 'Lj6g0011770' => 'lja', 'Lj6g0014097' => 'lja', 'Lj9A300T37' => 'lonja', 'Lju50A10T17' => 'lonja', 'Lsat_1_v5_gn_7_53861' => 'lsa', 'Lsat_1_v5_gn_7_76401' => 'lsa', 'Lsat_1_v5_gn_8_76661' => 'lsa', 'Manes.02G223600' => 'mes', 'Manes.05G012600' => 'mes', 'Manes.10G119902' => 'mes', 'Manes.13G117402' => 'mes', 'Manes.14G157474' => 'mes', 'Mapoly0019s0107' => 'mpo', 'Mapoly0190s0016' => 'mpo', 'MBI05_g32509_MAGBIO' => 'mbi', 'MBI11_g32071_MAGBIO' => 'mbi', 'MBI14_g08137_MAGBIO' => 'mbi', 'MBI18_g12613_MAGBIO' => 'mbi', 'MBI18_g30542_MAGBIO' => 'mbi', 'MBI19_g03284_MAGBIO' => 'mbi', 'MCO13G021' => 'mco', 'MD08G1240400' => 'mdo', 'MD09G1286600' => 'mdo', 'MD15G1433600' => 'mdo', 'MD16G1254000' => 'mdo', 'MD16G1254100' => 'mdo', 'MD17G1279000' => 'mdo', 'Medtr2g005900' => 'mtr', 'Medtr2g036690' => 'mtr', 'Medtr7g109850' => 'mtr', 'MELO3C004002.2' => 'cme', 'MELO3C011825.2' => 'cme', 'MELO3C015905.2' => 'cme', 'Migut.B00787' => 'egut', 'Migut.D00055' => 'egut', 'Migut.M00235' => 'egut', 'Migut.N00825' => 'egut', 'MSTRG.15077' => 'ama', 'MSTRG.21710' => 'ama', 'MSTRG.5213' => 'ama', 'Nitab4.5_0000006g0140' => 'nta', 'Nitab4.5_0000222g0090' => 'nta', 'Nitab4.5_0000667g0090' => 'nta', 'Nitab4.5_0000948g0080' => 'nta', 'Nitab4.5_0002550g0010' => 'nta', 'Nitab4.5_0002596g0070' => 'nta', 'Nitab4.5_0010752g0010' => 'nta', 'Nitab4.5_0013295g0010' => 'nta', 'Nn1g08385' => 'nnu', 'Nn2g10632' => 'nnu', 'Nn2g13424' => 'nnu', 'Nn3g21818' => 'nnu', 'Oeu000129.1' => 'oeu', 'Oeu004408.1' => 'oeu', 'Oeu008488.1' => 'oeu', 'Oeu008489.1' => 'oeu', 'Oeu038049.1' => 'oeu', 'Oeu045933.1' => 'oeu', 'Oeu056020.2' => 'oeu', 'Os03g0314700' => 'osa', 'Os06g0694500' => 'osa', 'Os11g0181500' => 'osa', 'Os12g0176200' => 'osa', 'Peaxi162Scf00002g02411' => 'pax', 'Peaxi162Scf00011g00933' => 'pax', 'Peaxi162Scf00462g00042' => 'pax', 'Peaxi162Scf00770g00013' => 'pax', 'PGR042G3227' => 'pgr', 'PGR044G0478' => 'pgr', 'PGR044G1571' => 'pgr', 'PGR083G0503' => 'pgr', 'PGSC0003DMG400005276' => 'stu', 'PGSC0003DMG400009020' => 'stu', 'PGSC0003DMG400024898' => 'stu', 'Phvul.001G214800' => 'pvu', 'Phvul.006G218300' => 'pvu', 'Phvul.009G238700' => 'pvu', 'Potri.002G192200' => 'ptr', 'Potri.003G009300' => 'ptr', 'Potri.004G222600' => 'ptr', 'Potri.006G165600' => 'ptr', 'Potri.014G117700' => 'ptr', 'Pp3c14_19650' => 'ppa', 'Pp3c2_23200' => 'ppa', 'PRCOL_00002783' => 'pco', 'PRCOL_00005187' => 'pco', 'Prupe.1G081800' => 'ppe', 'Prupe.1G577000' => 'ppe', 'Prupe.3G007000' => 'ppe', 'Prupe.6G008100' => 'ppe', 'Psat1g146960' => 'psa', 'Psat1g223440' => 'psa', 'Psat3g019000' => 'psa', 'PSO063G5418' => 'pso', 'PSO170G2651' => 'pso', 'PSO170G4354' => 'pso', 'PSO210G1196' => 'pso', 'PSO761G0367' => 'pso', 'PSO782G4022' => 'pso', 'QL02p100173' => 'qlo', 'QL11p005109' => 'qlo', 'QL12p018829' => 'qlo', 'RcHm_v2.0_Chr1g0317081' => 'rch', 'RcHm_v2.0_Chr1g0346861' => 'rch', 'RcHm_v2.0_Chr3g0487011' => 'rch', 'RcHm_v2.0_Chr4g0387891' => 'rch', 'RcHm_v2.0_Chr4g0400851' => 'rch', 'RcHm_v2.0_Chr5g0059041' => 'rch', 'Rhsim01G0292400' => 'rsi', 'Rhsim02G0076500' => 'rsi', 'Rhsim05G0118200' => 'rsi', 'Rhsim09G0002000' => 'rsi', 'Rhsim09G0190600' => 'rsi', 'Rhsim09G0190800' => 'rsi', 'Rhsim11G0124900' => 'rsi', 'Rhsim11G0125100' => 'rsi', 'Rhsim13G0040200' => 'rsi', 'RhsimUnG0217600' => 'rsi', 'RhsimUnG0217800' => 'rsi', 'RhsimUnG0218000' => 'rsi', 'Sabra06G0127400' => 'sbr', 'Sabra14G0087300' => 'sbr', 'SalBow1G5435' => 'sbo', 'SalBow3G1717' => 'sbo', 'SalBow3G3994' => 'sbo', 'Sc04g0003500' => 'sci', 'Sc04g0010540' => 'sci', 'Sc07g0004590' => 'sci', 'Sed0014348' => 'sed', 'Sed0018517' => 'sed', 'Sed0023884' => 'sed', 'SEGI_16917' => 'sgi', 'SEGI_17633' => 'sgi', 'SEGI_34300' => 'sgi', 'SEGI_35309' => 'sgi', 'SEGI_41551' => 'sgi', 'SGA_v2.0_scaffold42G15913' => 'sas', 'SGA_v2.0_scaffold80G25718' => 'sas', 'SGA_v2.0_scaffold8G04434' => 'sas', 'SHI34758' => 'shi', 'SMO024G0001' => 'smo', 'SMO118G0472' => 'smo', 'SMO144G0019' => 'smo', 'SMO347G0287' => 'smo', 'Solyc01g079220.4' => 'sly', 'Solyc01g103710.4' => 'sly', 'Solyc05g044630.3' => 'sly', 'Sopen01g031000' => 'spe', 'Sopen01g046120' => 'spe', 'Sopen05g026930' => 'spe', 'Sp6g01820' => 'spa', 'Sp6g11560' => 'spa', 'Sp7g23940' => 'spa', 'TAR365G0959' => 'tar', 'TAR381G0191' => 'tar', 'TAR626G1426' => 'tar', 'TAR628G1090' => 'tar', 'TAR633G1054' => 'tar', 'THA.LOC104799819' => 'tha', 'THA.LOC104801311' => 'tha', 'THA.LOC104817786' => 'tha', 'Thecc.01G318700' => 'tca', 'Thecc.02G023300' => 'tca', 'Thecc.09G178200' => 'tca', 'Thhalv10014572m.g' => 'esa', 'Thhalv10026125m.g' => 'esa', 'Thhalv10028839m.g' => 'esa', 'TPR.G2150' => 'tpr', 'TPR.G4072' => 'tpr', 'TPR.G9244' => 'tpr', 'TWI14G0226' => 'twi', 'TWI34G1171' => 'twi', 'TWI59G1035' => 'twi', 'unitig_62.g23130' => 'ugi', 'unitig_62.g23905' => 'ugi', 'unitig_699.g19850' => 'ugi', 'unitig_747.g21265' => 'ugi', 'vmacro15099' => 'vma', 'vmacro17581' => 'vma', 'vmacro19870' => 'vma', 'VMungo0540G0123' => 'vmu', 'VMungo1309G0577' => 'vmu', 'VMungo1383G1372' => 'vmu', 'VMungo1383G1795' => 'vmu', 'Zm00001eb015070' => 'zma', 'Zm00001eb201220' => 'zma', 'Zm00001eb273230' => 'zma' ) ), 'data_type' => 'gene_family', 'gf_id' => 'HOM05D001654', 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D001654' ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'subfamily_family_types' => array( (int) 0 => 'ORTHOFAM' ), 'parental_family_types' => array( (int) 0 => 'HOMFAM' ), 'gene_family_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'allowed_data_types' => array( 'GO' => 'Gene Ontology', 'INTERPRO' => 'InterPro', 'GENE_FAMILY' => 'Gene Family' ) ) $sidebar_info = array( 'gf_id' => 'HOM05D001654', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '391', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $gene_selection = array( 'parameters' => array( (int) 0 => array( 'data_type' => 'GENE_FAMILY', 'data_value' => 'HOM05D001654' ) ), 'genes' => array( 'A01p17190' => 'bna', 'A03p27570' => 'bna', 'A03p31360' => 'bna', 'A10p08660' => 'bna', 'Aa31LG3G290' => 'aar', 'Aa31LG3G300' => 'aar', 'Aa31LG3G6750' => 'aar', 'Aa31LG5G1590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4644' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1124' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1480' => 'aag', 'Actinidia02507' => 'ach', 'Actinidia06471' => 'ach', 'Actinidia25865' => 'ach', 'Actinidia26164' => 'ach', 'Ah.09g230010' => 'amhyb', 'AL6G51350' => 'aly', 'AL7G27100' => 'aly', 'AL8G23890' => 'aly', 'Aqoxy2G02641' => 'aox', 'Aqoxy6G00125' => 'aox', 'Aqoxy7G02984' => 'aox', 'arahy.Tifrunner.gnm1.ann1.G1RM5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKF9WG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS0PB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1V4H7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UW8EWK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZIY6TR' => 'arhy', 'AT4G01940' => 'ath', 'AT4G25910' => 'ath', 'AT5G49940' => 'ath', 'ATR0580G236' => 'atr', 'ATR0693G051' => 'atr', 'ATR1134G081' => 'atr', 'Atru.chr5.945' => 'acertr', 'Atru.chr6.763' => 'acertr', 'Atru.chr7.837' => 'acertr', 'AUR62011756' => 'cqu', 'AUR62021316' => 'cqu', 'AUR62022780' => 'cqu', 'AUR62024601' => 'cqu', 'AUR62033233' => 'cqu', 'BcaB01g02401' => 'bca', 'BcaB01g02931' => 'bca', 'BcaB01g02932' => 'bca', 'BcaB08g35376' => 'bca', 'BcaC01g04843' => 'bca', 'BcaC01g06789' => 'bca', 'BcaC04g20838' => 'bca', 'BcaC09g50733' => 'bca', 'BcaNung03768' => 'bca', 'BolC1t02071H' => 'bol', 'BolC3t15650H' => 'bol', 'BolC3t16108H' => 'bol', 'BolC9t56717H' => 'bol', 'BraA01t01675Z' => 'bra', 'BraA03t11970Z' => 'bra', 'BraA03t12316Z' => 'bra', 'BraSC37t46137Z' => 'bra', 'C01p21510' => 'bna', 'C03p33280' => 'bna', 'C03p38270' => 'bna', 'C09p38620' => 'bna', 'CAN.G293.5' => 'can', 'CAN.G798.52' => 'can', 'CAN.G97.7' => 'can', 'CANSAT11G1414' => 'cansat', 'CANSAT25G2218' => 'cansat', 'CANSAT54G0695' => 'cansat', 'CARHR233380' => 'chi', 'CARHR249740' => 'chi', 'CARHR258780' => 'chi', 'Carub.0006s3529' => 'cru', 'Carub.0007s1504' => 'cru', 'Carub.0008s0982' => 'cru', 'Ca_00046_v3' => 'car', 'Ca_02035_v3' => 'car', 'Ca_09225_v3' => 'car', 'CBR_g3282' => 'cbr', 'CBR_g39901' => 'cbr', 'CBR_g4584' => 'cbr', 'Cc01_g21660' => 'ccan', 'Cc02_g23000' => 'ccan', 'Cc05_g08650' => 'ccan', 'CDE02G0161' => 'cde', 'CDE05G0483' => 'cde', 'CDE07G0634' => 'cde', 'CDE08G1347' => 'cde', 'CDE11G0536' => 'cde', 'Cfa001520' => 'cfa', 'Cfa004509' => 'cfa', 'Cfa013406' => 'cfa', 'Ciclev10002359m.g' => 'ccl', 'Ciclev10009375m.g' => 'ccl', 'Ciclev10022131m.g' => 'ccl', 'CiPaw.01G010200' => 'cil', 'CiPaw.05G005900' => 'cil', 'CiPaw.06G173000' => 'cil', 'CiPaw.07G120500' => 'cil', 'CiPaw.07G194400' => 'cil', 'CiPaw.10G108200' => 'cil', 'ClCG02G019990' => 'cla', 'ClCG09G004900' => 'cla', 'ClCG09G022880' => 'cla', 'ClCG10G007540' => 'cla', 'ClCG11G011960' => 'cla', 'ClCG11G013330' => 'cla', 'COL.COLO4_06000' => 'col', 'COL.COLO4_17741' => 'col', 'COL.COLO4_23188' => 'col', 'Cpa.g.c34934.1' => 'cpa', 'Cpa.g.sc18.96' => 'cpa', 'Cpa.g.sc18.98' => 'cpa', 'Cpa.g.sc30.41' => 'cpa', 'Cre17.g710800' => 'cre', 'Cre18.g748447' => 'cre', 'CsaV3_2G008550' => 'csa', 'CsaV3_5G029830' => 'csa', 'CsaV3_6G016690' => 'csa', 'CsaV3_7G030190' => 'csa', 'CSS0008228' => 'camsi', 'CSS0009235' => 'camsi', 'CSS0034043' => 'camsi', 'CSS0038161' => 'camsi', 'CSS0043588' => 'camsi', 'DCAR_002908' => 'dca', 'DCAR_014691' => 'dca', 'DCAR_017986' => 'dca', 'DCAR_029272' => 'dca', 'Dinv00086' => 'din', 'Dinv07475' => 'din', 'Dinv12117' => 'din', 'Dinv19399' => 'din', 'Dinv19562' => 'din', 'Duzib052G1033' => 'dzi', 'Duzib138G0592' => 'dzi', 'Duzib150G1318' => 'dzi', 'Duzib170G0717' => 'dzi', 'Duzib248G1383' => 'dzi', 'ECA236G3292' => 'eca', 'ECA240G1393' => 'eca', 'ECA247G3538' => 'eca', 'EL10Ac1g02279' => 'bvu', 'EL10Ac4g08741' => 'bvu', 'EL10Ac5g11549' => 'bvu', 'EL10Ac5g11749' => 'bvu', 'EL10Ac8g18301' => 'bvu', 'EL10As5g23607' => 'bvu', 'Eucgr.C02388' => 'egr', 'Eucgr.G00348' => 'egr', 'Eucgr.H00910' => 'egr', 'FAN01G0458' => 'fan', 'FAN01G1194' => 'fan', 'FAN03G0897' => 'fan', 'FAN06G2452' => 'fan', 'FAN07G2725' => 'fan', 'FAN10G2163' => 'fan', 'FAN12G1553' => 'fan', 'FAN19G0421' => 'fan', 'FAN23G2580' => 'fan', 'FAN28G2334' => 'fan', 'FvH4_1g26790' => 'fve', 'FvH4_4g07770' => 'fve', 'FvH4_7g01380' => 'fve', 'Glyma.09G056800' => 'gma', 'Glyma.12G167700' => 'gma', 'Glyma.15G163100' => 'gma', 'Glyma.19G218400' => 'gma', 'Gohir.A01G182600' => 'ghi', 'Gohir.A04G132800' => 'ghi', 'Gohir.A05G003800' => 'ghi', 'Gohir.A12G123100' => 'ghi', 'Gohir.D01G173700' => 'ghi', 'Gohir.D04G176400' => 'ghi', 'Gohir.D05G004200' => 'ghi', 'Gohir.D12G126700' => 'ghi', 'Gorai.002G215800' => 'gra', 'Gorai.008G137600' => 'gra', 'Gorai.009G003900' => 'gra', 'Gorai.012G168000' => 'gra', 'GSVIVG01023274001' => 'vvi', 'GSVIVG01028158001' => 'vvi', 'GSVIVG01029242001' => 'vvi', 'HanXRQChr07g0202151' => 'han', 'HanXRQChr10g0284781' => 'han', 'HanXRQChr10g0294531' => 'han', 'Haze_10065' => 'cav', 'Haze_10068' => 'cav', 'Haze_17021' => 'cav', 'Haze_21951' => 'cav', 'Hma1.2p1_0427F.1_g150720' => 'hma', 'Hma1.2p1_0965F.1_g242110' => 'hma', 'Hma1.2p1_0965F.1_g242120' => 'hma', 'Hma1.2p1_1086F.1_g255470' => 'hma', 'HPP92_010771' => 'vpl', 'HPP92_019385' => 'vpl', 'Hund02947' => 'sun', 'Hund09037' => 'sun', 'Hund15487' => 'sun', 'Lalb_Chr04g0260031' => 'lal', 'Lalb_Chr04g0264711' => 'lal', 'Lalb_Chr15g0084031' => 'lal', 'Lj1g0022661' => 'lja', 'Lj2A1210G30' => 'lonja', 'Lj6g0011770' => 'lja', 'Lj6g0014097' => 'lja', 'Lj9A300T37' => 'lonja', 'Lju50A10T17' => 'lonja', 'Lsat_1_v5_gn_7_53861' => 'lsa', 'Lsat_1_v5_gn_7_76401' => 'lsa', 'Lsat_1_v5_gn_8_76661' => 'lsa', 'Manes.02G223600' => 'mes', 'Manes.05G012600' => 'mes', 'Manes.10G119902' => 'mes', 'Manes.13G117402' => 'mes', 'Manes.14G157474' => 'mes', 'Mapoly0019s0107' => 'mpo', 'Mapoly0190s0016' => 'mpo', 'MBI05_g32509_MAGBIO' => 'mbi', 'MBI11_g32071_MAGBIO' => 'mbi', 'MBI14_g08137_MAGBIO' => 'mbi', 'MBI18_g12613_MAGBIO' => 'mbi', 'MBI18_g30542_MAGBIO' => 'mbi', 'MBI19_g03284_MAGBIO' => 'mbi', 'MCO13G021' => 'mco', 'MD08G1240400' => 'mdo', 'MD09G1286600' => 'mdo', 'MD15G1433600' => 'mdo', 'MD16G1254000' => 'mdo', 'MD16G1254100' => 'mdo', 'MD17G1279000' => 'mdo', 'Medtr2g005900' => 'mtr', 'Medtr2g036690' => 'mtr', 'Medtr7g109850' => 'mtr', 'MELO3C004002.2' => 'cme', 'MELO3C011825.2' => 'cme', 'MELO3C015905.2' => 'cme', 'Migut.B00787' => 'egut', 'Migut.D00055' => 'egut', 'Migut.M00235' => 'egut', 'Migut.N00825' => 'egut', 'MSTRG.15077' => 'ama', 'MSTRG.21710' => 'ama', 'MSTRG.5213' => 'ama', 'Nitab4.5_0000006g0140' => 'nta', 'Nitab4.5_0000222g0090' => 'nta', 'Nitab4.5_0000667g0090' => 'nta', 'Nitab4.5_0000948g0080' => 'nta', 'Nitab4.5_0002550g0010' => 'nta', 'Nitab4.5_0002596g0070' => 'nta', 'Nitab4.5_0010752g0010' => 'nta', 'Nitab4.5_0013295g0010' => 'nta', 'Nn1g08385' => 'nnu', 'Nn2g10632' => 'nnu', 'Nn2g13424' => 'nnu', 'Nn3g21818' => 'nnu', 'Oeu000129.1' => 'oeu', 'Oeu004408.1' => 'oeu', 'Oeu008488.1' => 'oeu', 'Oeu008489.1' => 'oeu', 'Oeu038049.1' => 'oeu', 'Oeu045933.1' => 'oeu', 'Oeu056020.2' => 'oeu', 'Os03g0314700' => 'osa', 'Os06g0694500' => 'osa', 'Os11g0181500' => 'osa', 'Os12g0176200' => 'osa', 'Peaxi162Scf00002g02411' => 'pax', 'Peaxi162Scf00011g00933' => 'pax', 'Peaxi162Scf00462g00042' => 'pax', 'Peaxi162Scf00770g00013' => 'pax', 'PGR042G3227' => 'pgr', 'PGR044G0478' => 'pgr', 'PGR044G1571' => 'pgr', 'PGR083G0503' => 'pgr', 'PGSC0003DMG400005276' => 'stu', 'PGSC0003DMG400009020' => 'stu', 'PGSC0003DMG400024898' => 'stu', 'Phvul.001G214800' => 'pvu', 'Phvul.006G218300' => 'pvu', 'Phvul.009G238700' => 'pvu', 'Potri.002G192200' => 'ptr', 'Potri.003G009300' => 'ptr', 'Potri.004G222600' => 'ptr', 'Potri.006G165600' => 'ptr', 'Potri.014G117700' => 'ptr', 'Pp3c14_19650' => 'ppa', 'Pp3c2_23200' => 'ppa', 'PRCOL_00002783' => 'pco', 'PRCOL_00005187' => 'pco', 'Prupe.1G081800' => 'ppe', 'Prupe.1G577000' => 'ppe', 'Prupe.3G007000' => 'ppe', 'Prupe.6G008100' => 'ppe', 'Psat1g146960' => 'psa', 'Psat1g223440' => 'psa', 'Psat3g019000' => 'psa', 'PSO063G5418' => 'pso', 'PSO170G2651' => 'pso', 'PSO170G4354' => 'pso', 'PSO210G1196' => 'pso', 'PSO761G0367' => 'pso', 'PSO782G4022' => 'pso', 'QL02p100173' => 'qlo', 'QL11p005109' => 'qlo', 'QL12p018829' => 'qlo', 'RcHm_v2.0_Chr1g0317081' => 'rch', 'RcHm_v2.0_Chr1g0346861' => 'rch', 'RcHm_v2.0_Chr3g0487011' => 'rch', 'RcHm_v2.0_Chr4g0387891' => 'rch', 'RcHm_v2.0_Chr4g0400851' => 'rch', 'RcHm_v2.0_Chr5g0059041' => 'rch', 'Rhsim01G0292400' => 'rsi', 'Rhsim02G0076500' => 'rsi', 'Rhsim05G0118200' => 'rsi', 'Rhsim09G0002000' => 'rsi', 'Rhsim09G0190600' => 'rsi', 'Rhsim09G0190800' => 'rsi', 'Rhsim11G0124900' => 'rsi', 'Rhsim11G0125100' => 'rsi', 'Rhsim13G0040200' => 'rsi', 'RhsimUnG0217600' => 'rsi', 'RhsimUnG0217800' => 'rsi', 'RhsimUnG0218000' => 'rsi', 'Sabra06G0127400' => 'sbr', 'Sabra14G0087300' => 'sbr', 'SalBow1G5435' => 'sbo', 'SalBow3G1717' => 'sbo', 'SalBow3G3994' => 'sbo', 'Sc04g0003500' => 'sci', 'Sc04g0010540' => 'sci', 'Sc07g0004590' => 'sci', 'Sed0014348' => 'sed', 'Sed0018517' => 'sed', 'Sed0023884' => 'sed', 'SEGI_16917' => 'sgi', 'SEGI_17633' => 'sgi', 'SEGI_34300' => 'sgi', 'SEGI_35309' => 'sgi', 'SEGI_41551' => 'sgi', 'SGA_v2.0_scaffold42G15913' => 'sas', 'SGA_v2.0_scaffold80G25718' => 'sas', 'SGA_v2.0_scaffold8G04434' => 'sas', 'SHI34758' => 'shi', 'SMO024G0001' => 'smo', 'SMO118G0472' => 'smo', 'SMO144G0019' => 'smo', 'SMO347G0287' => 'smo', 'Solyc01g079220.4' => 'sly', 'Solyc01g103710.4' => 'sly', 'Solyc05g044630.3' => 'sly', 'Sopen01g031000' => 'spe', 'Sopen01g046120' => 'spe', 'Sopen05g026930' => 'spe', 'Sp6g01820' => 'spa', 'Sp6g11560' => 'spa', 'Sp7g23940' => 'spa', 'TAR365G0959' => 'tar', 'TAR381G0191' => 'tar', 'TAR626G1426' => 'tar', 'TAR628G1090' => 'tar', 'TAR633G1054' => 'tar', 'THA.LOC104799819' => 'tha', 'THA.LOC104801311' => 'tha', 'THA.LOC104817786' => 'tha', 'Thecc.01G318700' => 'tca', 'Thecc.02G023300' => 'tca', 'Thecc.09G178200' => 'tca', 'Thhalv10014572m.g' => 'esa', 'Thhalv10026125m.g' => 'esa', 'Thhalv10028839m.g' => 'esa', 'TPR.G2150' => 'tpr', 'TPR.G4072' => 'tpr', 'TPR.G9244' => 'tpr', 'TWI14G0226' => 'twi', 'TWI34G1171' => 'twi', 'TWI59G1035' => 'twi', 'unitig_62.g23130' => 'ugi', 'unitig_62.g23905' => 'ugi', 'unitig_699.g19850' => 'ugi', 'unitig_747.g21265' => 'ugi', 'vmacro15099' => 'vma', 'vmacro17581' => 'vma', 'vmacro19870' => 'vma', 'VMungo0540G0123' => 'vmu', 'VMungo1309G0577' => 'vmu', 'VMungo1383G1372' => 'vmu', 'VMungo1383G1795' => 'vmu', 'Zm00001eb015070' => 'zma', 'Zm00001eb201220' => 'zma', 'Zm00001eb273230' => 'zma' ) ) $data_type = 'gene_family' $gf_id = 'HOM05D001654' $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D001654' ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $subfamily_family_types = array( (int) 0 => 'ORTHOFAM' ) $parental_family_types = array( (int) 0 => 'HOMFAM' ) $gene_family_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $allowed_data_types = array( 'GO' => 'Gene Ontology', 'INTERPRO' => 'InterPro', 'GENE_FAMILY' => 'Gene Family' ) $data_identifier_value = 'HOM05D001654' $data_identifier_description = '' $adt_title = 'Gene Family' $adt = 'GENE_FAMILY' $is_selected = 'selected='selected'' $parameter = array( 'data_type' => 'GENE_FAMILY', 'data_value' => 'HOM05D001654' )include - APP/View/Tools/similarity_heatmap.ctp, line 77 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::render() - CORE/Cake/View/View.php, line 473 Controller::render() - CORE/Cake/Controller/Controller.php, line 963 Dispatcher::_invoke() - CORE/Cake/Routing/Dispatcher.php, line 200 Dispatcher::dispatch() - CORE/Cake/Routing/Dispatcher.php, line 167 [main] - APP/webroot/index.php, line 151
<label>Source(s)</label> <select class='form form-select' name='ontology_source_group' id='ontology_source_group'> <?php foreach ($source_groups_information['available'] as $source_group_id) : ?>
<label>Source(s)</label>
<select class='form form-select' name='ontology_source_group' id='ontology_source_group'>
<?php foreach ($source_groups_information['available'] as $source_group_id) : ?>
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Tools/similarity_heatmap.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D001654', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '391', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'gene_selection' => array( 'parameters' => array( (int) 0 => array( [maximum depth reached] ) ), 'genes' => array( 'A01p17190' => 'bna', 'A03p27570' => 'bna', 'A03p31360' => 'bna', 'A10p08660' => 'bna', 'Aa31LG3G290' => 'aar', 'Aa31LG3G300' => 'aar', 'Aa31LG3G6750' => 'aar', 'Aa31LG5G1590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4644' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1124' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1480' => 'aag', 'Actinidia02507' => 'ach', 'Actinidia06471' => 'ach', 'Actinidia25865' => 'ach', 'Actinidia26164' => 'ach', 'Ah.09g230010' => 'amhyb', 'AL6G51350' => 'aly', 'AL7G27100' => 'aly', 'AL8G23890' => 'aly', 'Aqoxy2G02641' => 'aox', 'Aqoxy6G00125' => 'aox', 'Aqoxy7G02984' => 'aox', 'arahy.Tifrunner.gnm1.ann1.G1RM5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKF9WG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS0PB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1V4H7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UW8EWK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZIY6TR' => 'arhy', 'AT4G01940' => 'ath', 'AT4G25910' => 'ath', 'AT5G49940' => 'ath', 'ATR0580G236' => 'atr', 'ATR0693G051' => 'atr', 'ATR1134G081' => 'atr', 'Atru.chr5.945' => 'acertr', 'Atru.chr6.763' => 'acertr', 'Atru.chr7.837' => 'acertr', 'AUR62011756' => 'cqu', 'AUR62021316' => 'cqu', 'AUR62022780' => 'cqu', 'AUR62024601' => 'cqu', 'AUR62033233' => 'cqu', 'BcaB01g02401' => 'bca', 'BcaB01g02931' => 'bca', 'BcaB01g02932' => 'bca', 'BcaB08g35376' => 'bca', 'BcaC01g04843' => 'bca', 'BcaC01g06789' => 'bca', 'BcaC04g20838' => 'bca', 'BcaC09g50733' => 'bca', 'BcaNung03768' => 'bca', 'BolC1t02071H' => 'bol', 'BolC3t15650H' => 'bol', 'BolC3t16108H' => 'bol', 'BolC9t56717H' => 'bol', 'BraA01t01675Z' => 'bra', 'BraA03t11970Z' => 'bra', 'BraA03t12316Z' => 'bra', 'BraSC37t46137Z' => 'bra', 'C01p21510' => 'bna', 'C03p33280' => 'bna', 'C03p38270' => 'bna', 'C09p38620' => 'bna', 'CAN.G293.5' => 'can', 'CAN.G798.52' => 'can', 'CAN.G97.7' => 'can', 'CANSAT11G1414' => 'cansat', 'CANSAT25G2218' => 'cansat', 'CANSAT54G0695' => 'cansat', 'CARHR233380' => 'chi', 'CARHR249740' => 'chi', 'CARHR258780' => 'chi', 'Carub.0006s3529' => 'cru', 'Carub.0007s1504' => 'cru', 'Carub.0008s0982' => 'cru', 'Ca_00046_v3' => 'car', 'Ca_02035_v3' => 'car', 'Ca_09225_v3' => 'car', 'CBR_g3282' => 'cbr', 'CBR_g39901' => 'cbr', 'CBR_g4584' => 'cbr', 'Cc01_g21660' => 'ccan', 'Cc02_g23000' => 'ccan', 'Cc05_g08650' => 'ccan', 'CDE02G0161' => 'cde', 'CDE05G0483' => 'cde', 'CDE07G0634' => 'cde', 'CDE08G1347' => 'cde', 'CDE11G0536' => 'cde', 'Cfa001520' => 'cfa', 'Cfa004509' => 'cfa', 'Cfa013406' => 'cfa', 'Ciclev10002359m.g' => 'ccl', 'Ciclev10009375m.g' => 'ccl', 'Ciclev10022131m.g' => 'ccl', 'CiPaw.01G010200' => 'cil', 'CiPaw.05G005900' => 'cil', 'CiPaw.06G173000' => 'cil', 'CiPaw.07G120500' => 'cil', 'CiPaw.07G194400' => 'cil', 'CiPaw.10G108200' => 'cil', 'ClCG02G019990' => 'cla', 'ClCG09G004900' => 'cla', 'ClCG09G022880' => 'cla', 'ClCG10G007540' => 'cla', 'ClCG11G011960' => 'cla', 'ClCG11G013330' => 'cla', 'COL.COLO4_06000' => 'col', 'COL.COLO4_17741' => 'col', 'COL.COLO4_23188' => 'col', 'Cpa.g.c34934.1' => 'cpa', 'Cpa.g.sc18.96' => 'cpa', 'Cpa.g.sc18.98' => 'cpa', 'Cpa.g.sc30.41' => 'cpa', 'Cre17.g710800' => 'cre', 'Cre18.g748447' => 'cre', 'CsaV3_2G008550' => 'csa', 'CsaV3_5G029830' => 'csa', 'CsaV3_6G016690' => 'csa', 'CsaV3_7G030190' => 'csa', 'CSS0008228' => 'camsi', 'CSS0009235' => 'camsi', 'CSS0034043' => 'camsi', 'CSS0038161' => 'camsi', 'CSS0043588' => 'camsi', 'DCAR_002908' => 'dca', 'DCAR_014691' => 'dca', 'DCAR_017986' => 'dca', 'DCAR_029272' => 'dca', 'Dinv00086' => 'din', 'Dinv07475' => 'din', 'Dinv12117' => 'din', 'Dinv19399' => 'din', 'Dinv19562' => 'din', 'Duzib052G1033' => 'dzi', 'Duzib138G0592' => 'dzi', 'Duzib150G1318' => 'dzi', 'Duzib170G0717' => 'dzi', 'Duzib248G1383' => 'dzi', 'ECA236G3292' => 'eca', 'ECA240G1393' => 'eca', 'ECA247G3538' => 'eca', 'EL10Ac1g02279' => 'bvu', 'EL10Ac4g08741' => 'bvu', 'EL10Ac5g11549' => 'bvu', 'EL10Ac5g11749' => 'bvu', 'EL10Ac8g18301' => 'bvu', 'EL10As5g23607' => 'bvu', 'Eucgr.C02388' => 'egr', 'Eucgr.G00348' => 'egr', 'Eucgr.H00910' => 'egr', 'FAN01G0458' => 'fan', 'FAN01G1194' => 'fan', 'FAN03G0897' => 'fan', 'FAN06G2452' => 'fan', 'FAN07G2725' => 'fan', 'FAN10G2163' => 'fan', 'FAN12G1553' => 'fan', 'FAN19G0421' => 'fan', 'FAN23G2580' => 'fan', 'FAN28G2334' => 'fan', 'FvH4_1g26790' => 'fve', 'FvH4_4g07770' => 'fve', 'FvH4_7g01380' => 'fve', 'Glyma.09G056800' => 'gma', 'Glyma.12G167700' => 'gma', 'Glyma.15G163100' => 'gma', 'Glyma.19G218400' => 'gma', 'Gohir.A01G182600' => 'ghi', 'Gohir.A04G132800' => 'ghi', 'Gohir.A05G003800' => 'ghi', 'Gohir.A12G123100' => 'ghi', 'Gohir.D01G173700' => 'ghi', 'Gohir.D04G176400' => 'ghi', 'Gohir.D05G004200' => 'ghi', 'Gohir.D12G126700' => 'ghi', 'Gorai.002G215800' => 'gra', 'Gorai.008G137600' => 'gra', 'Gorai.009G003900' => 'gra', 'Gorai.012G168000' => 'gra', 'GSVIVG01023274001' => 'vvi', 'GSVIVG01028158001' => 'vvi', 'GSVIVG01029242001' => 'vvi', 'HanXRQChr07g0202151' => 'han', 'HanXRQChr10g0284781' => 'han', 'HanXRQChr10g0294531' => 'han', 'Haze_10065' => 'cav', 'Haze_10068' => 'cav', 'Haze_17021' => 'cav', 'Haze_21951' => 'cav', 'Hma1.2p1_0427F.1_g150720' => 'hma', 'Hma1.2p1_0965F.1_g242110' => 'hma', 'Hma1.2p1_0965F.1_g242120' => 'hma', 'Hma1.2p1_1086F.1_g255470' => 'hma', 'HPP92_010771' => 'vpl', 'HPP92_019385' => 'vpl', 'Hund02947' => 'sun', 'Hund09037' => 'sun', 'Hund15487' => 'sun', 'Lalb_Chr04g0260031' => 'lal', 'Lalb_Chr04g0264711' => 'lal', 'Lalb_Chr15g0084031' => 'lal', 'Lj1g0022661' => 'lja', 'Lj2A1210G30' => 'lonja', 'Lj6g0011770' => 'lja', 'Lj6g0014097' => 'lja', 'Lj9A300T37' => 'lonja', 'Lju50A10T17' => 'lonja', 'Lsat_1_v5_gn_7_53861' => 'lsa', 'Lsat_1_v5_gn_7_76401' => 'lsa', 'Lsat_1_v5_gn_8_76661' => 'lsa', 'Manes.02G223600' => 'mes', 'Manes.05G012600' => 'mes', 'Manes.10G119902' => 'mes', 'Manes.13G117402' => 'mes', 'Manes.14G157474' => 'mes', 'Mapoly0019s0107' => 'mpo', 'Mapoly0190s0016' => 'mpo', 'MBI05_g32509_MAGBIO' => 'mbi', 'MBI11_g32071_MAGBIO' => 'mbi', 'MBI14_g08137_MAGBIO' => 'mbi', 'MBI18_g12613_MAGBIO' => 'mbi', 'MBI18_g30542_MAGBIO' => 'mbi', 'MBI19_g03284_MAGBIO' => 'mbi', 'MCO13G021' => 'mco', 'MD08G1240400' => 'mdo', 'MD09G1286600' => 'mdo', 'MD15G1433600' => 'mdo', 'MD16G1254000' => 'mdo', 'MD16G1254100' => 'mdo', 'MD17G1279000' => 'mdo', 'Medtr2g005900' => 'mtr', 'Medtr2g036690' => 'mtr', 'Medtr7g109850' => 'mtr', 'MELO3C004002.2' => 'cme', 'MELO3C011825.2' => 'cme', 'MELO3C015905.2' => 'cme', 'Migut.B00787' => 'egut', 'Migut.D00055' => 'egut', 'Migut.M00235' => 'egut', 'Migut.N00825' => 'egut', 'MSTRG.15077' => 'ama', 'MSTRG.21710' => 'ama', 'MSTRG.5213' => 'ama', 'Nitab4.5_0000006g0140' => 'nta', 'Nitab4.5_0000222g0090' => 'nta', 'Nitab4.5_0000667g0090' => 'nta', 'Nitab4.5_0000948g0080' => 'nta', 'Nitab4.5_0002550g0010' => 'nta', 'Nitab4.5_0002596g0070' => 'nta', 'Nitab4.5_0010752g0010' => 'nta', 'Nitab4.5_0013295g0010' => 'nta', 'Nn1g08385' => 'nnu', 'Nn2g10632' => 'nnu', 'Nn2g13424' => 'nnu', 'Nn3g21818' => 'nnu', 'Oeu000129.1' => 'oeu', 'Oeu004408.1' => 'oeu', 'Oeu008488.1' => 'oeu', 'Oeu008489.1' => 'oeu', 'Oeu038049.1' => 'oeu', 'Oeu045933.1' => 'oeu', 'Oeu056020.2' => 'oeu', 'Os03g0314700' => 'osa', 'Os06g0694500' => 'osa', 'Os11g0181500' => 'osa', 'Os12g0176200' => 'osa', 'Peaxi162Scf00002g02411' => 'pax', 'Peaxi162Scf00011g00933' => 'pax', 'Peaxi162Scf00462g00042' => 'pax', 'Peaxi162Scf00770g00013' => 'pax', 'PGR042G3227' => 'pgr', 'PGR044G0478' => 'pgr', 'PGR044G1571' => 'pgr', 'PGR083G0503' => 'pgr', 'PGSC0003DMG400005276' => 'stu', 'PGSC0003DMG400009020' => 'stu', 'PGSC0003DMG400024898' => 'stu', 'Phvul.001G214800' => 'pvu', 'Phvul.006G218300' => 'pvu', 'Phvul.009G238700' => 'pvu', 'Potri.002G192200' => 'ptr', 'Potri.003G009300' => 'ptr', 'Potri.004G222600' => 'ptr', 'Potri.006G165600' => 'ptr', 'Potri.014G117700' => 'ptr', 'Pp3c14_19650' => 'ppa', 'Pp3c2_23200' => 'ppa', 'PRCOL_00002783' => 'pco', 'PRCOL_00005187' => 'pco', 'Prupe.1G081800' => 'ppe', 'Prupe.1G577000' => 'ppe', 'Prupe.3G007000' => 'ppe', 'Prupe.6G008100' => 'ppe', 'Psat1g146960' => 'psa', 'Psat1g223440' => 'psa', 'Psat3g019000' => 'psa', 'PSO063G5418' => 'pso', 'PSO170G2651' => 'pso', 'PSO170G4354' => 'pso', 'PSO210G1196' => 'pso', 'PSO761G0367' => 'pso', 'PSO782G4022' => 'pso', 'QL02p100173' => 'qlo', 'QL11p005109' => 'qlo', 'QL12p018829' => 'qlo', 'RcHm_v2.0_Chr1g0317081' => 'rch', 'RcHm_v2.0_Chr1g0346861' => 'rch', 'RcHm_v2.0_Chr3g0487011' => 'rch', 'RcHm_v2.0_Chr4g0387891' => 'rch', 'RcHm_v2.0_Chr4g0400851' => 'rch', 'RcHm_v2.0_Chr5g0059041' => 'rch', 'Rhsim01G0292400' => 'rsi', 'Rhsim02G0076500' => 'rsi', 'Rhsim05G0118200' => 'rsi', 'Rhsim09G0002000' => 'rsi', 'Rhsim09G0190600' => 'rsi', 'Rhsim09G0190800' => 'rsi', 'Rhsim11G0124900' => 'rsi', 'Rhsim11G0125100' => 'rsi', 'Rhsim13G0040200' => 'rsi', 'RhsimUnG0217600' => 'rsi', 'RhsimUnG0217800' => 'rsi', 'RhsimUnG0218000' => 'rsi', 'Sabra06G0127400' => 'sbr', 'Sabra14G0087300' => 'sbr', 'SalBow1G5435' => 'sbo', 'SalBow3G1717' => 'sbo', 'SalBow3G3994' => 'sbo', 'Sc04g0003500' => 'sci', 'Sc04g0010540' => 'sci', 'Sc07g0004590' => 'sci', 'Sed0014348' => 'sed', 'Sed0018517' => 'sed', 'Sed0023884' => 'sed', 'SEGI_16917' => 'sgi', 'SEGI_17633' => 'sgi', 'SEGI_34300' => 'sgi', 'SEGI_35309' => 'sgi', 'SEGI_41551' => 'sgi', 'SGA_v2.0_scaffold42G15913' => 'sas', 'SGA_v2.0_scaffold80G25718' => 'sas', 'SGA_v2.0_scaffold8G04434' => 'sas', 'SHI34758' => 'shi', 'SMO024G0001' => 'smo', 'SMO118G0472' => 'smo', 'SMO144G0019' => 'smo', 'SMO347G0287' => 'smo', 'Solyc01g079220.4' => 'sly', 'Solyc01g103710.4' => 'sly', 'Solyc05g044630.3' => 'sly', 'Sopen01g031000' => 'spe', 'Sopen01g046120' => 'spe', 'Sopen05g026930' => 'spe', 'Sp6g01820' => 'spa', 'Sp6g11560' => 'spa', 'Sp7g23940' => 'spa', 'TAR365G0959' => 'tar', 'TAR381G0191' => 'tar', 'TAR626G1426' => 'tar', 'TAR628G1090' => 'tar', 'TAR633G1054' => 'tar', 'THA.LOC104799819' => 'tha', 'THA.LOC104801311' => 'tha', 'THA.LOC104817786' => 'tha', 'Thecc.01G318700' => 'tca', 'Thecc.02G023300' => 'tca', 'Thecc.09G178200' => 'tca', 'Thhalv10014572m.g' => 'esa', 'Thhalv10026125m.g' => 'esa', 'Thhalv10028839m.g' => 'esa', 'TPR.G2150' => 'tpr', 'TPR.G4072' => 'tpr', 'TPR.G9244' => 'tpr', 'TWI14G0226' => 'twi', 'TWI34G1171' => 'twi', 'TWI59G1035' => 'twi', 'unitig_62.g23130' => 'ugi', 'unitig_62.g23905' => 'ugi', 'unitig_699.g19850' => 'ugi', 'unitig_747.g21265' => 'ugi', 'vmacro15099' => 'vma', 'vmacro17581' => 'vma', 'vmacro19870' => 'vma', 'VMungo0540G0123' => 'vmu', 'VMungo1309G0577' => 'vmu', 'VMungo1383G1372' => 'vmu', 'VMungo1383G1795' => 'vmu', 'Zm00001eb015070' => 'zma', 'Zm00001eb201220' => 'zma', 'Zm00001eb273230' => 'zma' ) ), 'data_type' => 'gene_family', 'gf_id' => 'HOM05D001654', 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D001654' ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'subfamily_family_types' => array( (int) 0 => 'ORTHOFAM' ), 'parental_family_types' => array( (int) 0 => 'HOMFAM' ), 'gene_family_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'allowed_data_types' => array( 'GO' => 'Gene Ontology', 'INTERPRO' => 'InterPro', 'GENE_FAMILY' => 'Gene Family' ) ) $sidebar_info = array( 'gf_id' => 'HOM05D001654', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '391', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $gene_selection = array( 'parameters' => array( (int) 0 => array( 'data_type' => 'GENE_FAMILY', 'data_value' => 'HOM05D001654' ) ), 'genes' => array( 'A01p17190' => 'bna', 'A03p27570' => 'bna', 'A03p31360' => 'bna', 'A10p08660' => 'bna', 'Aa31LG3G290' => 'aar', 'Aa31LG3G300' => 'aar', 'Aa31LG3G6750' => 'aar', 'Aa31LG5G1590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4644' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1124' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1480' => 'aag', 'Actinidia02507' => 'ach', 'Actinidia06471' => 'ach', 'Actinidia25865' => 'ach', 'Actinidia26164' => 'ach', 'Ah.09g230010' => 'amhyb', 'AL6G51350' => 'aly', 'AL7G27100' => 'aly', 'AL8G23890' => 'aly', 'Aqoxy2G02641' => 'aox', 'Aqoxy6G00125' => 'aox', 'Aqoxy7G02984' => 'aox', 'arahy.Tifrunner.gnm1.ann1.G1RM5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKF9WG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS0PB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1V4H7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UW8EWK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZIY6TR' => 'arhy', 'AT4G01940' => 'ath', 'AT4G25910' => 'ath', 'AT5G49940' => 'ath', 'ATR0580G236' => 'atr', 'ATR0693G051' => 'atr', 'ATR1134G081' => 'atr', 'Atru.chr5.945' => 'acertr', 'Atru.chr6.763' => 'acertr', 'Atru.chr7.837' => 'acertr', 'AUR62011756' => 'cqu', 'AUR62021316' => 'cqu', 'AUR62022780' => 'cqu', 'AUR62024601' => 'cqu', 'AUR62033233' => 'cqu', 'BcaB01g02401' => 'bca', 'BcaB01g02931' => 'bca', 'BcaB01g02932' => 'bca', 'BcaB08g35376' => 'bca', 'BcaC01g04843' => 'bca', 'BcaC01g06789' => 'bca', 'BcaC04g20838' => 'bca', 'BcaC09g50733' => 'bca', 'BcaNung03768' => 'bca', 'BolC1t02071H' => 'bol', 'BolC3t15650H' => 'bol', 'BolC3t16108H' => 'bol', 'BolC9t56717H' => 'bol', 'BraA01t01675Z' => 'bra', 'BraA03t11970Z' => 'bra', 'BraA03t12316Z' => 'bra', 'BraSC37t46137Z' => 'bra', 'C01p21510' => 'bna', 'C03p33280' => 'bna', 'C03p38270' => 'bna', 'C09p38620' => 'bna', 'CAN.G293.5' => 'can', 'CAN.G798.52' => 'can', 'CAN.G97.7' => 'can', 'CANSAT11G1414' => 'cansat', 'CANSAT25G2218' => 'cansat', 'CANSAT54G0695' => 'cansat', 'CARHR233380' => 'chi', 'CARHR249740' => 'chi', 'CARHR258780' => 'chi', 'Carub.0006s3529' => 'cru', 'Carub.0007s1504' => 'cru', 'Carub.0008s0982' => 'cru', 'Ca_00046_v3' => 'car', 'Ca_02035_v3' => 'car', 'Ca_09225_v3' => 'car', 'CBR_g3282' => 'cbr', 'CBR_g39901' => 'cbr', 'CBR_g4584' => 'cbr', 'Cc01_g21660' => 'ccan', 'Cc02_g23000' => 'ccan', 'Cc05_g08650' => 'ccan', 'CDE02G0161' => 'cde', 'CDE05G0483' => 'cde', 'CDE07G0634' => 'cde', 'CDE08G1347' => 'cde', 'CDE11G0536' => 'cde', 'Cfa001520' => 'cfa', 'Cfa004509' => 'cfa', 'Cfa013406' => 'cfa', 'Ciclev10002359m.g' => 'ccl', 'Ciclev10009375m.g' => 'ccl', 'Ciclev10022131m.g' => 'ccl', 'CiPaw.01G010200' => 'cil', 'CiPaw.05G005900' => 'cil', 'CiPaw.06G173000' => 'cil', 'CiPaw.07G120500' => 'cil', 'CiPaw.07G194400' => 'cil', 'CiPaw.10G108200' => 'cil', 'ClCG02G019990' => 'cla', 'ClCG09G004900' => 'cla', 'ClCG09G022880' => 'cla', 'ClCG10G007540' => 'cla', 'ClCG11G011960' => 'cla', 'ClCG11G013330' => 'cla', 'COL.COLO4_06000' => 'col', 'COL.COLO4_17741' => 'col', 'COL.COLO4_23188' => 'col', 'Cpa.g.c34934.1' => 'cpa', 'Cpa.g.sc18.96' => 'cpa', 'Cpa.g.sc18.98' => 'cpa', 'Cpa.g.sc30.41' => 'cpa', 'Cre17.g710800' => 'cre', 'Cre18.g748447' => 'cre', 'CsaV3_2G008550' => 'csa', 'CsaV3_5G029830' => 'csa', 'CsaV3_6G016690' => 'csa', 'CsaV3_7G030190' => 'csa', 'CSS0008228' => 'camsi', 'CSS0009235' => 'camsi', 'CSS0034043' => 'camsi', 'CSS0038161' => 'camsi', 'CSS0043588' => 'camsi', 'DCAR_002908' => 'dca', 'DCAR_014691' => 'dca', 'DCAR_017986' => 'dca', 'DCAR_029272' => 'dca', 'Dinv00086' => 'din', 'Dinv07475' => 'din', 'Dinv12117' => 'din', 'Dinv19399' => 'din', 'Dinv19562' => 'din', 'Duzib052G1033' => 'dzi', 'Duzib138G0592' => 'dzi', 'Duzib150G1318' => 'dzi', 'Duzib170G0717' => 'dzi', 'Duzib248G1383' => 'dzi', 'ECA236G3292' => 'eca', 'ECA240G1393' => 'eca', 'ECA247G3538' => 'eca', 'EL10Ac1g02279' => 'bvu', 'EL10Ac4g08741' => 'bvu', 'EL10Ac5g11549' => 'bvu', 'EL10Ac5g11749' => 'bvu', 'EL10Ac8g18301' => 'bvu', 'EL10As5g23607' => 'bvu', 'Eucgr.C02388' => 'egr', 'Eucgr.G00348' => 'egr', 'Eucgr.H00910' => 'egr', 'FAN01G0458' => 'fan', 'FAN01G1194' => 'fan', 'FAN03G0897' => 'fan', 'FAN06G2452' => 'fan', 'FAN07G2725' => 'fan', 'FAN10G2163' => 'fan', 'FAN12G1553' => 'fan', 'FAN19G0421' => 'fan', 'FAN23G2580' => 'fan', 'FAN28G2334' => 'fan', 'FvH4_1g26790' => 'fve', 'FvH4_4g07770' => 'fve', 'FvH4_7g01380' => 'fve', 'Glyma.09G056800' => 'gma', 'Glyma.12G167700' => 'gma', 'Glyma.15G163100' => 'gma', 'Glyma.19G218400' => 'gma', 'Gohir.A01G182600' => 'ghi', 'Gohir.A04G132800' => 'ghi', 'Gohir.A05G003800' => 'ghi', 'Gohir.A12G123100' => 'ghi', 'Gohir.D01G173700' => 'ghi', 'Gohir.D04G176400' => 'ghi', 'Gohir.D05G004200' => 'ghi', 'Gohir.D12G126700' => 'ghi', 'Gorai.002G215800' => 'gra', 'Gorai.008G137600' => 'gra', 'Gorai.009G003900' => 'gra', 'Gorai.012G168000' => 'gra', 'GSVIVG01023274001' => 'vvi', 'GSVIVG01028158001' => 'vvi', 'GSVIVG01029242001' => 'vvi', 'HanXRQChr07g0202151' => 'han', 'HanXRQChr10g0284781' => 'han', 'HanXRQChr10g0294531' => 'han', 'Haze_10065' => 'cav', 'Haze_10068' => 'cav', 'Haze_17021' => 'cav', 'Haze_21951' => 'cav', 'Hma1.2p1_0427F.1_g150720' => 'hma', 'Hma1.2p1_0965F.1_g242110' => 'hma', 'Hma1.2p1_0965F.1_g242120' => 'hma', 'Hma1.2p1_1086F.1_g255470' => 'hma', 'HPP92_010771' => 'vpl', 'HPP92_019385' => 'vpl', 'Hund02947' => 'sun', 'Hund09037' => 'sun', 'Hund15487' => 'sun', 'Lalb_Chr04g0260031' => 'lal', 'Lalb_Chr04g0264711' => 'lal', 'Lalb_Chr15g0084031' => 'lal', 'Lj1g0022661' => 'lja', 'Lj2A1210G30' => 'lonja', 'Lj6g0011770' => 'lja', 'Lj6g0014097' => 'lja', 'Lj9A300T37' => 'lonja', 'Lju50A10T17' => 'lonja', 'Lsat_1_v5_gn_7_53861' => 'lsa', 'Lsat_1_v5_gn_7_76401' => 'lsa', 'Lsat_1_v5_gn_8_76661' => 'lsa', 'Manes.02G223600' => 'mes', 'Manes.05G012600' => 'mes', 'Manes.10G119902' => 'mes', 'Manes.13G117402' => 'mes', 'Manes.14G157474' => 'mes', 'Mapoly0019s0107' => 'mpo', 'Mapoly0190s0016' => 'mpo', 'MBI05_g32509_MAGBIO' => 'mbi', 'MBI11_g32071_MAGBIO' => 'mbi', 'MBI14_g08137_MAGBIO' => 'mbi', 'MBI18_g12613_MAGBIO' => 'mbi', 'MBI18_g30542_MAGBIO' => 'mbi', 'MBI19_g03284_MAGBIO' => 'mbi', 'MCO13G021' => 'mco', 'MD08G1240400' => 'mdo', 'MD09G1286600' => 'mdo', 'MD15G1433600' => 'mdo', 'MD16G1254000' => 'mdo', 'MD16G1254100' => 'mdo', 'MD17G1279000' => 'mdo', 'Medtr2g005900' => 'mtr', 'Medtr2g036690' => 'mtr', 'Medtr7g109850' => 'mtr', 'MELO3C004002.2' => 'cme', 'MELO3C011825.2' => 'cme', 'MELO3C015905.2' => 'cme', 'Migut.B00787' => 'egut', 'Migut.D00055' => 'egut', 'Migut.M00235' => 'egut', 'Migut.N00825' => 'egut', 'MSTRG.15077' => 'ama', 'MSTRG.21710' => 'ama', 'MSTRG.5213' => 'ama', 'Nitab4.5_0000006g0140' => 'nta', 'Nitab4.5_0000222g0090' => 'nta', 'Nitab4.5_0000667g0090' => 'nta', 'Nitab4.5_0000948g0080' => 'nta', 'Nitab4.5_0002550g0010' => 'nta', 'Nitab4.5_0002596g0070' => 'nta', 'Nitab4.5_0010752g0010' => 'nta', 'Nitab4.5_0013295g0010' => 'nta', 'Nn1g08385' => 'nnu', 'Nn2g10632' => 'nnu', 'Nn2g13424' => 'nnu', 'Nn3g21818' => 'nnu', 'Oeu000129.1' => 'oeu', 'Oeu004408.1' => 'oeu', 'Oeu008488.1' => 'oeu', 'Oeu008489.1' => 'oeu', 'Oeu038049.1' => 'oeu', 'Oeu045933.1' => 'oeu', 'Oeu056020.2' => 'oeu', 'Os03g0314700' => 'osa', 'Os06g0694500' => 'osa', 'Os11g0181500' => 'osa', 'Os12g0176200' => 'osa', 'Peaxi162Scf00002g02411' => 'pax', 'Peaxi162Scf00011g00933' => 'pax', 'Peaxi162Scf00462g00042' => 'pax', 'Peaxi162Scf00770g00013' => 'pax', 'PGR042G3227' => 'pgr', 'PGR044G0478' => 'pgr', 'PGR044G1571' => 'pgr', 'PGR083G0503' => 'pgr', 'PGSC0003DMG400005276' => 'stu', 'PGSC0003DMG400009020' => 'stu', 'PGSC0003DMG400024898' => 'stu', 'Phvul.001G214800' => 'pvu', 'Phvul.006G218300' => 'pvu', 'Phvul.009G238700' => 'pvu', 'Potri.002G192200' => 'ptr', 'Potri.003G009300' => 'ptr', 'Potri.004G222600' => 'ptr', 'Potri.006G165600' => 'ptr', 'Potri.014G117700' => 'ptr', 'Pp3c14_19650' => 'ppa', 'Pp3c2_23200' => 'ppa', 'PRCOL_00002783' => 'pco', 'PRCOL_00005187' => 'pco', 'Prupe.1G081800' => 'ppe', 'Prupe.1G577000' => 'ppe', 'Prupe.3G007000' => 'ppe', 'Prupe.6G008100' => 'ppe', 'Psat1g146960' => 'psa', 'Psat1g223440' => 'psa', 'Psat3g019000' => 'psa', 'PSO063G5418' => 'pso', 'PSO170G2651' => 'pso', 'PSO170G4354' => 'pso', 'PSO210G1196' => 'pso', 'PSO761G0367' => 'pso', 'PSO782G4022' => 'pso', 'QL02p100173' => 'qlo', 'QL11p005109' => 'qlo', 'QL12p018829' => 'qlo', 'RcHm_v2.0_Chr1g0317081' => 'rch', 'RcHm_v2.0_Chr1g0346861' => 'rch', 'RcHm_v2.0_Chr3g0487011' => 'rch', 'RcHm_v2.0_Chr4g0387891' => 'rch', 'RcHm_v2.0_Chr4g0400851' => 'rch', 'RcHm_v2.0_Chr5g0059041' => 'rch', 'Rhsim01G0292400' => 'rsi', 'Rhsim02G0076500' => 'rsi', 'Rhsim05G0118200' => 'rsi', 'Rhsim09G0002000' => 'rsi', 'Rhsim09G0190600' => 'rsi', 'Rhsim09G0190800' => 'rsi', 'Rhsim11G0124900' => 'rsi', 'Rhsim11G0125100' => 'rsi', 'Rhsim13G0040200' => 'rsi', 'RhsimUnG0217600' => 'rsi', 'RhsimUnG0217800' => 'rsi', 'RhsimUnG0218000' => 'rsi', 'Sabra06G0127400' => 'sbr', 'Sabra14G0087300' => 'sbr', 'SalBow1G5435' => 'sbo', 'SalBow3G1717' => 'sbo', 'SalBow3G3994' => 'sbo', 'Sc04g0003500' => 'sci', 'Sc04g0010540' => 'sci', 'Sc07g0004590' => 'sci', 'Sed0014348' => 'sed', 'Sed0018517' => 'sed', 'Sed0023884' => 'sed', 'SEGI_16917' => 'sgi', 'SEGI_17633' => 'sgi', 'SEGI_34300' => 'sgi', 'SEGI_35309' => 'sgi', 'SEGI_41551' => 'sgi', 'SGA_v2.0_scaffold42G15913' => 'sas', 'SGA_v2.0_scaffold80G25718' => 'sas', 'SGA_v2.0_scaffold8G04434' => 'sas', 'SHI34758' => 'shi', 'SMO024G0001' => 'smo', 'SMO118G0472' => 'smo', 'SMO144G0019' => 'smo', 'SMO347G0287' => 'smo', 'Solyc01g079220.4' => 'sly', 'Solyc01g103710.4' => 'sly', 'Solyc05g044630.3' => 'sly', 'Sopen01g031000' => 'spe', 'Sopen01g046120' => 'spe', 'Sopen05g026930' => 'spe', 'Sp6g01820' => 'spa', 'Sp6g11560' => 'spa', 'Sp7g23940' => 'spa', 'TAR365G0959' => 'tar', 'TAR381G0191' => 'tar', 'TAR626G1426' => 'tar', 'TAR628G1090' => 'tar', 'TAR633G1054' => 'tar', 'THA.LOC104799819' => 'tha', 'THA.LOC104801311' => 'tha', 'THA.LOC104817786' => 'tha', 'Thecc.01G318700' => 'tca', 'Thecc.02G023300' => 'tca', 'Thecc.09G178200' => 'tca', 'Thhalv10014572m.g' => 'esa', 'Thhalv10026125m.g' => 'esa', 'Thhalv10028839m.g' => 'esa', 'TPR.G2150' => 'tpr', 'TPR.G4072' => 'tpr', 'TPR.G9244' => 'tpr', 'TWI14G0226' => 'twi', 'TWI34G1171' => 'twi', 'TWI59G1035' => 'twi', 'unitig_62.g23130' => 'ugi', 'unitig_62.g23905' => 'ugi', 'unitig_699.g19850' => 'ugi', 'unitig_747.g21265' => 'ugi', 'vmacro15099' => 'vma', 'vmacro17581' => 'vma', 'vmacro19870' => 'vma', 'VMungo0540G0123' => 'vmu', 'VMungo1309G0577' => 'vmu', 'VMungo1383G1372' => 'vmu', 'VMungo1383G1795' => 'vmu', 'Zm00001eb015070' => 'zma', 'Zm00001eb201220' => 'zma', 'Zm00001eb273230' => 'zma' ) ) $data_type = 'gene_family' $gf_id = 'HOM05D001654' $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D001654' ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $subfamily_family_types = array( (int) 0 => 'ORTHOFAM' ) $parental_family_types = array( (int) 0 => 'HOMFAM' ) $gene_family_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $allowed_data_types = array( 'GO' => 'Gene Ontology', 'INTERPRO' => 'InterPro', 'GENE_FAMILY' => 'Gene Family' ) $data_identifier_value = 'HOM05D001654' $data_identifier_description = '' $adt_title = 'Gene Family' $adt = 'GENE_FAMILY' $is_selected = 'selected='selected'' $parameter = array( 'data_type' => 'GENE_FAMILY', 'data_value' => 'HOM05D001654' )
include - APP/View/Tools/similarity_heatmap.ctp, line 77 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::render() - CORE/Cake/View/View.php, line 473 Controller::render() - CORE/Cake/Controller/Controller.php, line 963 Dispatcher::_invoke() - CORE/Cake/Routing/Dispatcher.php, line 200 Dispatcher::dispatch() - CORE/Cake/Routing/Dispatcher.php, line 167 [main] - APP/webroot/index.php, line 151
Notice (8): Trying to access array offset on value of type null [APP/View/Tools/similarity_heatmap.ctp, line 77]Code Context <label>Source(s)</label> <select class='form form-select' name='ontology_source_group' id='ontology_source_group'> <?php foreach ($source_groups_information['available'] as $source_group_id) : ?> $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Tools/similarity_heatmap.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D001654', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '391', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'gene_selection' => array( 'parameters' => array( (int) 0 => array( [maximum depth reached] ) ), 'genes' => array( 'A01p17190' => 'bna', 'A03p27570' => 'bna', 'A03p31360' => 'bna', 'A10p08660' => 'bna', 'Aa31LG3G290' => 'aar', 'Aa31LG3G300' => 'aar', 'Aa31LG3G6750' => 'aar', 'Aa31LG5G1590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4644' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1124' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1480' => 'aag', 'Actinidia02507' => 'ach', 'Actinidia06471' => 'ach', 'Actinidia25865' => 'ach', 'Actinidia26164' => 'ach', 'Ah.09g230010' => 'amhyb', 'AL6G51350' => 'aly', 'AL7G27100' => 'aly', 'AL8G23890' => 'aly', 'Aqoxy2G02641' => 'aox', 'Aqoxy6G00125' => 'aox', 'Aqoxy7G02984' => 'aox', 'arahy.Tifrunner.gnm1.ann1.G1RM5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKF9WG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS0PB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1V4H7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UW8EWK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZIY6TR' => 'arhy', 'AT4G01940' => 'ath', 'AT4G25910' => 'ath', 'AT5G49940' => 'ath', 'ATR0580G236' => 'atr', 'ATR0693G051' => 'atr', 'ATR1134G081' => 'atr', 'Atru.chr5.945' => 'acertr', 'Atru.chr6.763' => 'acertr', 'Atru.chr7.837' => 'acertr', 'AUR62011756' => 'cqu', 'AUR62021316' => 'cqu', 'AUR62022780' => 'cqu', 'AUR62024601' => 'cqu', 'AUR62033233' => 'cqu', 'BcaB01g02401' => 'bca', 'BcaB01g02931' => 'bca', 'BcaB01g02932' => 'bca', 'BcaB08g35376' => 'bca', 'BcaC01g04843' => 'bca', 'BcaC01g06789' => 'bca', 'BcaC04g20838' => 'bca', 'BcaC09g50733' => 'bca', 'BcaNung03768' => 'bca', 'BolC1t02071H' => 'bol', 'BolC3t15650H' => 'bol', 'BolC3t16108H' => 'bol', 'BolC9t56717H' => 'bol', 'BraA01t01675Z' => 'bra', 'BraA03t11970Z' => 'bra', 'BraA03t12316Z' => 'bra', 'BraSC37t46137Z' => 'bra', 'C01p21510' => 'bna', 'C03p33280' => 'bna', 'C03p38270' => 'bna', 'C09p38620' => 'bna', 'CAN.G293.5' => 'can', 'CAN.G798.52' => 'can', 'CAN.G97.7' => 'can', 'CANSAT11G1414' => 'cansat', 'CANSAT25G2218' => 'cansat', 'CANSAT54G0695' => 'cansat', 'CARHR233380' => 'chi', 'CARHR249740' => 'chi', 'CARHR258780' => 'chi', 'Carub.0006s3529' => 'cru', 'Carub.0007s1504' => 'cru', 'Carub.0008s0982' => 'cru', 'Ca_00046_v3' => 'car', 'Ca_02035_v3' => 'car', 'Ca_09225_v3' => 'car', 'CBR_g3282' => 'cbr', 'CBR_g39901' => 'cbr', 'CBR_g4584' => 'cbr', 'Cc01_g21660' => 'ccan', 'Cc02_g23000' => 'ccan', 'Cc05_g08650' => 'ccan', 'CDE02G0161' => 'cde', 'CDE05G0483' => 'cde', 'CDE07G0634' => 'cde', 'CDE08G1347' => 'cde', 'CDE11G0536' => 'cde', 'Cfa001520' => 'cfa', 'Cfa004509' => 'cfa', 'Cfa013406' => 'cfa', 'Ciclev10002359m.g' => 'ccl', 'Ciclev10009375m.g' => 'ccl', 'Ciclev10022131m.g' => 'ccl', 'CiPaw.01G010200' => 'cil', 'CiPaw.05G005900' => 'cil', 'CiPaw.06G173000' => 'cil', 'CiPaw.07G120500' => 'cil', 'CiPaw.07G194400' => 'cil', 'CiPaw.10G108200' => 'cil', 'ClCG02G019990' => 'cla', 'ClCG09G004900' => 'cla', 'ClCG09G022880' => 'cla', 'ClCG10G007540' => 'cla', 'ClCG11G011960' => 'cla', 'ClCG11G013330' => 'cla', 'COL.COLO4_06000' => 'col', 'COL.COLO4_17741' => 'col', 'COL.COLO4_23188' => 'col', 'Cpa.g.c34934.1' => 'cpa', 'Cpa.g.sc18.96' => 'cpa', 'Cpa.g.sc18.98' => 'cpa', 'Cpa.g.sc30.41' => 'cpa', 'Cre17.g710800' => 'cre', 'Cre18.g748447' => 'cre', 'CsaV3_2G008550' => 'csa', 'CsaV3_5G029830' => 'csa', 'CsaV3_6G016690' => 'csa', 'CsaV3_7G030190' => 'csa', 'CSS0008228' => 'camsi', 'CSS0009235' => 'camsi', 'CSS0034043' => 'camsi', 'CSS0038161' => 'camsi', 'CSS0043588' => 'camsi', 'DCAR_002908' => 'dca', 'DCAR_014691' => 'dca', 'DCAR_017986' => 'dca', 'DCAR_029272' => 'dca', 'Dinv00086' => 'din', 'Dinv07475' => 'din', 'Dinv12117' => 'din', 'Dinv19399' => 'din', 'Dinv19562' => 'din', 'Duzib052G1033' => 'dzi', 'Duzib138G0592' => 'dzi', 'Duzib150G1318' => 'dzi', 'Duzib170G0717' => 'dzi', 'Duzib248G1383' => 'dzi', 'ECA236G3292' => 'eca', 'ECA240G1393' => 'eca', 'ECA247G3538' => 'eca', 'EL10Ac1g02279' => 'bvu', 'EL10Ac4g08741' => 'bvu', 'EL10Ac5g11549' => 'bvu', 'EL10Ac5g11749' => 'bvu', 'EL10Ac8g18301' => 'bvu', 'EL10As5g23607' => 'bvu', 'Eucgr.C02388' => 'egr', 'Eucgr.G00348' => 'egr', 'Eucgr.H00910' => 'egr', 'FAN01G0458' => 'fan', 'FAN01G1194' => 'fan', 'FAN03G0897' => 'fan', 'FAN06G2452' => 'fan', 'FAN07G2725' => 'fan', 'FAN10G2163' => 'fan', 'FAN12G1553' => 'fan', 'FAN19G0421' => 'fan', 'FAN23G2580' => 'fan', 'FAN28G2334' => 'fan', 'FvH4_1g26790' => 'fve', 'FvH4_4g07770' => 'fve', 'FvH4_7g01380' => 'fve', 'Glyma.09G056800' => 'gma', 'Glyma.12G167700' => 'gma', 'Glyma.15G163100' => 'gma', 'Glyma.19G218400' => 'gma', 'Gohir.A01G182600' => 'ghi', 'Gohir.A04G132800' => 'ghi', 'Gohir.A05G003800' => 'ghi', 'Gohir.A12G123100' => 'ghi', 'Gohir.D01G173700' => 'ghi', 'Gohir.D04G176400' => 'ghi', 'Gohir.D05G004200' => 'ghi', 'Gohir.D12G126700' => 'ghi', 'Gorai.002G215800' => 'gra', 'Gorai.008G137600' => 'gra', 'Gorai.009G003900' => 'gra', 'Gorai.012G168000' => 'gra', 'GSVIVG01023274001' => 'vvi', 'GSVIVG01028158001' => 'vvi', 'GSVIVG01029242001' => 'vvi', 'HanXRQChr07g0202151' => 'han', 'HanXRQChr10g0284781' => 'han', 'HanXRQChr10g0294531' => 'han', 'Haze_10065' => 'cav', 'Haze_10068' => 'cav', 'Haze_17021' => 'cav', 'Haze_21951' => 'cav', 'Hma1.2p1_0427F.1_g150720' => 'hma', 'Hma1.2p1_0965F.1_g242110' => 'hma', 'Hma1.2p1_0965F.1_g242120' => 'hma', 'Hma1.2p1_1086F.1_g255470' => 'hma', 'HPP92_010771' => 'vpl', 'HPP92_019385' => 'vpl', 'Hund02947' => 'sun', 'Hund09037' => 'sun', 'Hund15487' => 'sun', 'Lalb_Chr04g0260031' => 'lal', 'Lalb_Chr04g0264711' => 'lal', 'Lalb_Chr15g0084031' => 'lal', 'Lj1g0022661' => 'lja', 'Lj2A1210G30' => 'lonja', 'Lj6g0011770' => 'lja', 'Lj6g0014097' => 'lja', 'Lj9A300T37' => 'lonja', 'Lju50A10T17' => 'lonja', 'Lsat_1_v5_gn_7_53861' => 'lsa', 'Lsat_1_v5_gn_7_76401' => 'lsa', 'Lsat_1_v5_gn_8_76661' => 'lsa', 'Manes.02G223600' => 'mes', 'Manes.05G012600' => 'mes', 'Manes.10G119902' => 'mes', 'Manes.13G117402' => 'mes', 'Manes.14G157474' => 'mes', 'Mapoly0019s0107' => 'mpo', 'Mapoly0190s0016' => 'mpo', 'MBI05_g32509_MAGBIO' => 'mbi', 'MBI11_g32071_MAGBIO' => 'mbi', 'MBI14_g08137_MAGBIO' => 'mbi', 'MBI18_g12613_MAGBIO' => 'mbi', 'MBI18_g30542_MAGBIO' => 'mbi', 'MBI19_g03284_MAGBIO' => 'mbi', 'MCO13G021' => 'mco', 'MD08G1240400' => 'mdo', 'MD09G1286600' => 'mdo', 'MD15G1433600' => 'mdo', 'MD16G1254000' => 'mdo', 'MD16G1254100' => 'mdo', 'MD17G1279000' => 'mdo', 'Medtr2g005900' => 'mtr', 'Medtr2g036690' => 'mtr', 'Medtr7g109850' => 'mtr', 'MELO3C004002.2' => 'cme', 'MELO3C011825.2' => 'cme', 'MELO3C015905.2' => 'cme', 'Migut.B00787' => 'egut', 'Migut.D00055' => 'egut', 'Migut.M00235' => 'egut', 'Migut.N00825' => 'egut', 'MSTRG.15077' => 'ama', 'MSTRG.21710' => 'ama', 'MSTRG.5213' => 'ama', 'Nitab4.5_0000006g0140' => 'nta', 'Nitab4.5_0000222g0090' => 'nta', 'Nitab4.5_0000667g0090' => 'nta', 'Nitab4.5_0000948g0080' => 'nta', 'Nitab4.5_0002550g0010' => 'nta', 'Nitab4.5_0002596g0070' => 'nta', 'Nitab4.5_0010752g0010' => 'nta', 'Nitab4.5_0013295g0010' => 'nta', 'Nn1g08385' => 'nnu', 'Nn2g10632' => 'nnu', 'Nn2g13424' => 'nnu', 'Nn3g21818' => 'nnu', 'Oeu000129.1' => 'oeu', 'Oeu004408.1' => 'oeu', 'Oeu008488.1' => 'oeu', 'Oeu008489.1' => 'oeu', 'Oeu038049.1' => 'oeu', 'Oeu045933.1' => 'oeu', 'Oeu056020.2' => 'oeu', 'Os03g0314700' => 'osa', 'Os06g0694500' => 'osa', 'Os11g0181500' => 'osa', 'Os12g0176200' => 'osa', 'Peaxi162Scf00002g02411' => 'pax', 'Peaxi162Scf00011g00933' => 'pax', 'Peaxi162Scf00462g00042' => 'pax', 'Peaxi162Scf00770g00013' => 'pax', 'PGR042G3227' => 'pgr', 'PGR044G0478' => 'pgr', 'PGR044G1571' => 'pgr', 'PGR083G0503' => 'pgr', 'PGSC0003DMG400005276' => 'stu', 'PGSC0003DMG400009020' => 'stu', 'PGSC0003DMG400024898' => 'stu', 'Phvul.001G214800' => 'pvu', 'Phvul.006G218300' => 'pvu', 'Phvul.009G238700' => 'pvu', 'Potri.002G192200' => 'ptr', 'Potri.003G009300' => 'ptr', 'Potri.004G222600' => 'ptr', 'Potri.006G165600' => 'ptr', 'Potri.014G117700' => 'ptr', 'Pp3c14_19650' => 'ppa', 'Pp3c2_23200' => 'ppa', 'PRCOL_00002783' => 'pco', 'PRCOL_00005187' => 'pco', 'Prupe.1G081800' => 'ppe', 'Prupe.1G577000' => 'ppe', 'Prupe.3G007000' => 'ppe', 'Prupe.6G008100' => 'ppe', 'Psat1g146960' => 'psa', 'Psat1g223440' => 'psa', 'Psat3g019000' => 'psa', 'PSO063G5418' => 'pso', 'PSO170G2651' => 'pso', 'PSO170G4354' => 'pso', 'PSO210G1196' => 'pso', 'PSO761G0367' => 'pso', 'PSO782G4022' => 'pso', 'QL02p100173' => 'qlo', 'QL11p005109' => 'qlo', 'QL12p018829' => 'qlo', 'RcHm_v2.0_Chr1g0317081' => 'rch', 'RcHm_v2.0_Chr1g0346861' => 'rch', 'RcHm_v2.0_Chr3g0487011' => 'rch', 'RcHm_v2.0_Chr4g0387891' => 'rch', 'RcHm_v2.0_Chr4g0400851' => 'rch', 'RcHm_v2.0_Chr5g0059041' => 'rch', 'Rhsim01G0292400' => 'rsi', 'Rhsim02G0076500' => 'rsi', 'Rhsim05G0118200' => 'rsi', 'Rhsim09G0002000' => 'rsi', 'Rhsim09G0190600' => 'rsi', 'Rhsim09G0190800' => 'rsi', 'Rhsim11G0124900' => 'rsi', 'Rhsim11G0125100' => 'rsi', 'Rhsim13G0040200' => 'rsi', 'RhsimUnG0217600' => 'rsi', 'RhsimUnG0217800' => 'rsi', 'RhsimUnG0218000' => 'rsi', 'Sabra06G0127400' => 'sbr', 'Sabra14G0087300' => 'sbr', 'SalBow1G5435' => 'sbo', 'SalBow3G1717' => 'sbo', 'SalBow3G3994' => 'sbo', 'Sc04g0003500' => 'sci', 'Sc04g0010540' => 'sci', 'Sc07g0004590' => 'sci', 'Sed0014348' => 'sed', 'Sed0018517' => 'sed', 'Sed0023884' => 'sed', 'SEGI_16917' => 'sgi', 'SEGI_17633' => 'sgi', 'SEGI_34300' => 'sgi', 'SEGI_35309' => 'sgi', 'SEGI_41551' => 'sgi', 'SGA_v2.0_scaffold42G15913' => 'sas', 'SGA_v2.0_scaffold80G25718' => 'sas', 'SGA_v2.0_scaffold8G04434' => 'sas', 'SHI34758' => 'shi', 'SMO024G0001' => 'smo', 'SMO118G0472' => 'smo', 'SMO144G0019' => 'smo', 'SMO347G0287' => 'smo', 'Solyc01g079220.4' => 'sly', 'Solyc01g103710.4' => 'sly', 'Solyc05g044630.3' => 'sly', 'Sopen01g031000' => 'spe', 'Sopen01g046120' => 'spe', 'Sopen05g026930' => 'spe', 'Sp6g01820' => 'spa', 'Sp6g11560' => 'spa', 'Sp7g23940' => 'spa', 'TAR365G0959' => 'tar', 'TAR381G0191' => 'tar', 'TAR626G1426' => 'tar', 'TAR628G1090' => 'tar', 'TAR633G1054' => 'tar', 'THA.LOC104799819' => 'tha', 'THA.LOC104801311' => 'tha', 'THA.LOC104817786' => 'tha', 'Thecc.01G318700' => 'tca', 'Thecc.02G023300' => 'tca', 'Thecc.09G178200' => 'tca', 'Thhalv10014572m.g' => 'esa', 'Thhalv10026125m.g' => 'esa', 'Thhalv10028839m.g' => 'esa', 'TPR.G2150' => 'tpr', 'TPR.G4072' => 'tpr', 'TPR.G9244' => 'tpr', 'TWI14G0226' => 'twi', 'TWI34G1171' => 'twi', 'TWI59G1035' => 'twi', 'unitig_62.g23130' => 'ugi', 'unitig_62.g23905' => 'ugi', 'unitig_699.g19850' => 'ugi', 'unitig_747.g21265' => 'ugi', 'vmacro15099' => 'vma', 'vmacro17581' => 'vma', 'vmacro19870' => 'vma', 'VMungo0540G0123' => 'vmu', 'VMungo1309G0577' => 'vmu', 'VMungo1383G1372' => 'vmu', 'VMungo1383G1795' => 'vmu', 'Zm00001eb015070' => 'zma', 'Zm00001eb201220' => 'zma', 'Zm00001eb273230' => 'zma' ) ), 'data_type' => 'gene_family', 'gf_id' => 'HOM05D001654', 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D001654' ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'subfamily_family_types' => array( (int) 0 => 'ORTHOFAM' ), 'parental_family_types' => array( (int) 0 => 'HOMFAM' ), 'gene_family_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'allowed_data_types' => array( 'GO' => 'Gene Ontology', 'INTERPRO' => 'InterPro', 'GENE_FAMILY' => 'Gene Family' ) ) $sidebar_info = array( 'gf_id' => 'HOM05D001654', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '391', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $gene_selection = array( 'parameters' => array( (int) 0 => array( 'data_type' => 'GENE_FAMILY', 'data_value' => 'HOM05D001654' ) ), 'genes' => array( 'A01p17190' => 'bna', 'A03p27570' => 'bna', 'A03p31360' => 'bna', 'A10p08660' => 'bna', 'Aa31LG3G290' => 'aar', 'Aa31LG3G300' => 'aar', 'Aa31LG3G6750' => 'aar', 'Aa31LG5G1590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4644' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1124' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1480' => 'aag', 'Actinidia02507' => 'ach', 'Actinidia06471' => 'ach', 'Actinidia25865' => 'ach', 'Actinidia26164' => 'ach', 'Ah.09g230010' => 'amhyb', 'AL6G51350' => 'aly', 'AL7G27100' => 'aly', 'AL8G23890' => 'aly', 'Aqoxy2G02641' => 'aox', 'Aqoxy6G00125' => 'aox', 'Aqoxy7G02984' => 'aox', 'arahy.Tifrunner.gnm1.ann1.G1RM5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKF9WG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS0PB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1V4H7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UW8EWK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZIY6TR' => 'arhy', 'AT4G01940' => 'ath', 'AT4G25910' => 'ath', 'AT5G49940' => 'ath', 'ATR0580G236' => 'atr', 'ATR0693G051' => 'atr', 'ATR1134G081' => 'atr', 'Atru.chr5.945' => 'acertr', 'Atru.chr6.763' => 'acertr', 'Atru.chr7.837' => 'acertr', 'AUR62011756' => 'cqu', 'AUR62021316' => 'cqu', 'AUR62022780' => 'cqu', 'AUR62024601' => 'cqu', 'AUR62033233' => 'cqu', 'BcaB01g02401' => 'bca', 'BcaB01g02931' => 'bca', 'BcaB01g02932' => 'bca', 'BcaB08g35376' => 'bca', 'BcaC01g04843' => 'bca', 'BcaC01g06789' => 'bca', 'BcaC04g20838' => 'bca', 'BcaC09g50733' => 'bca', 'BcaNung03768' => 'bca', 'BolC1t02071H' => 'bol', 'BolC3t15650H' => 'bol', 'BolC3t16108H' => 'bol', 'BolC9t56717H' => 'bol', 'BraA01t01675Z' => 'bra', 'BraA03t11970Z' => 'bra', 'BraA03t12316Z' => 'bra', 'BraSC37t46137Z' => 'bra', 'C01p21510' => 'bna', 'C03p33280' => 'bna', 'C03p38270' => 'bna', 'C09p38620' => 'bna', 'CAN.G293.5' => 'can', 'CAN.G798.52' => 'can', 'CAN.G97.7' => 'can', 'CANSAT11G1414' => 'cansat', 'CANSAT25G2218' => 'cansat', 'CANSAT54G0695' => 'cansat', 'CARHR233380' => 'chi', 'CARHR249740' => 'chi', 'CARHR258780' => 'chi', 'Carub.0006s3529' => 'cru', 'Carub.0007s1504' => 'cru', 'Carub.0008s0982' => 'cru', 'Ca_00046_v3' => 'car', 'Ca_02035_v3' => 'car', 'Ca_09225_v3' => 'car', 'CBR_g3282' => 'cbr', 'CBR_g39901' => 'cbr', 'CBR_g4584' => 'cbr', 'Cc01_g21660' => 'ccan', 'Cc02_g23000' => 'ccan', 'Cc05_g08650' => 'ccan', 'CDE02G0161' => 'cde', 'CDE05G0483' => 'cde', 'CDE07G0634' => 'cde', 'CDE08G1347' => 'cde', 'CDE11G0536' => 'cde', 'Cfa001520' => 'cfa', 'Cfa004509' => 'cfa', 'Cfa013406' => 'cfa', 'Ciclev10002359m.g' => 'ccl', 'Ciclev10009375m.g' => 'ccl', 'Ciclev10022131m.g' => 'ccl', 'CiPaw.01G010200' => 'cil', 'CiPaw.05G005900' => 'cil', 'CiPaw.06G173000' => 'cil', 'CiPaw.07G120500' => 'cil', 'CiPaw.07G194400' => 'cil', 'CiPaw.10G108200' => 'cil', 'ClCG02G019990' => 'cla', 'ClCG09G004900' => 'cla', 'ClCG09G022880' => 'cla', 'ClCG10G007540' => 'cla', 'ClCG11G011960' => 'cla', 'ClCG11G013330' => 'cla', 'COL.COLO4_06000' => 'col', 'COL.COLO4_17741' => 'col', 'COL.COLO4_23188' => 'col', 'Cpa.g.c34934.1' => 'cpa', 'Cpa.g.sc18.96' => 'cpa', 'Cpa.g.sc18.98' => 'cpa', 'Cpa.g.sc30.41' => 'cpa', 'Cre17.g710800' => 'cre', 'Cre18.g748447' => 'cre', 'CsaV3_2G008550' => 'csa', 'CsaV3_5G029830' => 'csa', 'CsaV3_6G016690' => 'csa', 'CsaV3_7G030190' => 'csa', 'CSS0008228' => 'camsi', 'CSS0009235' => 'camsi', 'CSS0034043' => 'camsi', 'CSS0038161' => 'camsi', 'CSS0043588' => 'camsi', 'DCAR_002908' => 'dca', 'DCAR_014691' => 'dca', 'DCAR_017986' => 'dca', 'DCAR_029272' => 'dca', 'Dinv00086' => 'din', 'Dinv07475' => 'din', 'Dinv12117' => 'din', 'Dinv19399' => 'din', 'Dinv19562' => 'din', 'Duzib052G1033' => 'dzi', 'Duzib138G0592' => 'dzi', 'Duzib150G1318' => 'dzi', 'Duzib170G0717' => 'dzi', 'Duzib248G1383' => 'dzi', 'ECA236G3292' => 'eca', 'ECA240G1393' => 'eca', 'ECA247G3538' => 'eca', 'EL10Ac1g02279' => 'bvu', 'EL10Ac4g08741' => 'bvu', 'EL10Ac5g11549' => 'bvu', 'EL10Ac5g11749' => 'bvu', 'EL10Ac8g18301' => 'bvu', 'EL10As5g23607' => 'bvu', 'Eucgr.C02388' => 'egr', 'Eucgr.G00348' => 'egr', 'Eucgr.H00910' => 'egr', 'FAN01G0458' => 'fan', 'FAN01G1194' => 'fan', 'FAN03G0897' => 'fan', 'FAN06G2452' => 'fan', 'FAN07G2725' => 'fan', 'FAN10G2163' => 'fan', 'FAN12G1553' => 'fan', 'FAN19G0421' => 'fan', 'FAN23G2580' => 'fan', 'FAN28G2334' => 'fan', 'FvH4_1g26790' => 'fve', 'FvH4_4g07770' => 'fve', 'FvH4_7g01380' => 'fve', 'Glyma.09G056800' => 'gma', 'Glyma.12G167700' => 'gma', 'Glyma.15G163100' => 'gma', 'Glyma.19G218400' => 'gma', 'Gohir.A01G182600' => 'ghi', 'Gohir.A04G132800' => 'ghi', 'Gohir.A05G003800' => 'ghi', 'Gohir.A12G123100' => 'ghi', 'Gohir.D01G173700' => 'ghi', 'Gohir.D04G176400' => 'ghi', 'Gohir.D05G004200' => 'ghi', 'Gohir.D12G126700' => 'ghi', 'Gorai.002G215800' => 'gra', 'Gorai.008G137600' => 'gra', 'Gorai.009G003900' => 'gra', 'Gorai.012G168000' => 'gra', 'GSVIVG01023274001' => 'vvi', 'GSVIVG01028158001' => 'vvi', 'GSVIVG01029242001' => 'vvi', 'HanXRQChr07g0202151' => 'han', 'HanXRQChr10g0284781' => 'han', 'HanXRQChr10g0294531' => 'han', 'Haze_10065' => 'cav', 'Haze_10068' => 'cav', 'Haze_17021' => 'cav', 'Haze_21951' => 'cav', 'Hma1.2p1_0427F.1_g150720' => 'hma', 'Hma1.2p1_0965F.1_g242110' => 'hma', 'Hma1.2p1_0965F.1_g242120' => 'hma', 'Hma1.2p1_1086F.1_g255470' => 'hma', 'HPP92_010771' => 'vpl', 'HPP92_019385' => 'vpl', 'Hund02947' => 'sun', 'Hund09037' => 'sun', 'Hund15487' => 'sun', 'Lalb_Chr04g0260031' => 'lal', 'Lalb_Chr04g0264711' => 'lal', 'Lalb_Chr15g0084031' => 'lal', 'Lj1g0022661' => 'lja', 'Lj2A1210G30' => 'lonja', 'Lj6g0011770' => 'lja', 'Lj6g0014097' => 'lja', 'Lj9A300T37' => 'lonja', 'Lju50A10T17' => 'lonja', 'Lsat_1_v5_gn_7_53861' => 'lsa', 'Lsat_1_v5_gn_7_76401' => 'lsa', 'Lsat_1_v5_gn_8_76661' => 'lsa', 'Manes.02G223600' => 'mes', 'Manes.05G012600' => 'mes', 'Manes.10G119902' => 'mes', 'Manes.13G117402' => 'mes', 'Manes.14G157474' => 'mes', 'Mapoly0019s0107' => 'mpo', 'Mapoly0190s0016' => 'mpo', 'MBI05_g32509_MAGBIO' => 'mbi', 'MBI11_g32071_MAGBIO' => 'mbi', 'MBI14_g08137_MAGBIO' => 'mbi', 'MBI18_g12613_MAGBIO' => 'mbi', 'MBI18_g30542_MAGBIO' => 'mbi', 'MBI19_g03284_MAGBIO' => 'mbi', 'MCO13G021' => 'mco', 'MD08G1240400' => 'mdo', 'MD09G1286600' => 'mdo', 'MD15G1433600' => 'mdo', 'MD16G1254000' => 'mdo', 'MD16G1254100' => 'mdo', 'MD17G1279000' => 'mdo', 'Medtr2g005900' => 'mtr', 'Medtr2g036690' => 'mtr', 'Medtr7g109850' => 'mtr', 'MELO3C004002.2' => 'cme', 'MELO3C011825.2' => 'cme', 'MELO3C015905.2' => 'cme', 'Migut.B00787' => 'egut', 'Migut.D00055' => 'egut', 'Migut.M00235' => 'egut', 'Migut.N00825' => 'egut', 'MSTRG.15077' => 'ama', 'MSTRG.21710' => 'ama', 'MSTRG.5213' => 'ama', 'Nitab4.5_0000006g0140' => 'nta', 'Nitab4.5_0000222g0090' => 'nta', 'Nitab4.5_0000667g0090' => 'nta', 'Nitab4.5_0000948g0080' => 'nta', 'Nitab4.5_0002550g0010' => 'nta', 'Nitab4.5_0002596g0070' => 'nta', 'Nitab4.5_0010752g0010' => 'nta', 'Nitab4.5_0013295g0010' => 'nta', 'Nn1g08385' => 'nnu', 'Nn2g10632' => 'nnu', 'Nn2g13424' => 'nnu', 'Nn3g21818' => 'nnu', 'Oeu000129.1' => 'oeu', 'Oeu004408.1' => 'oeu', 'Oeu008488.1' => 'oeu', 'Oeu008489.1' => 'oeu', 'Oeu038049.1' => 'oeu', 'Oeu045933.1' => 'oeu', 'Oeu056020.2' => 'oeu', 'Os03g0314700' => 'osa', 'Os06g0694500' => 'osa', 'Os11g0181500' => 'osa', 'Os12g0176200' => 'osa', 'Peaxi162Scf00002g02411' => 'pax', 'Peaxi162Scf00011g00933' => 'pax', 'Peaxi162Scf00462g00042' => 'pax', 'Peaxi162Scf00770g00013' => 'pax', 'PGR042G3227' => 'pgr', 'PGR044G0478' => 'pgr', 'PGR044G1571' => 'pgr', 'PGR083G0503' => 'pgr', 'PGSC0003DMG400005276' => 'stu', 'PGSC0003DMG400009020' => 'stu', 'PGSC0003DMG400024898' => 'stu', 'Phvul.001G214800' => 'pvu', 'Phvul.006G218300' => 'pvu', 'Phvul.009G238700' => 'pvu', 'Potri.002G192200' => 'ptr', 'Potri.003G009300' => 'ptr', 'Potri.004G222600' => 'ptr', 'Potri.006G165600' => 'ptr', 'Potri.014G117700' => 'ptr', 'Pp3c14_19650' => 'ppa', 'Pp3c2_23200' => 'ppa', 'PRCOL_00002783' => 'pco', 'PRCOL_00005187' => 'pco', 'Prupe.1G081800' => 'ppe', 'Prupe.1G577000' => 'ppe', 'Prupe.3G007000' => 'ppe', 'Prupe.6G008100' => 'ppe', 'Psat1g146960' => 'psa', 'Psat1g223440' => 'psa', 'Psat3g019000' => 'psa', 'PSO063G5418' => 'pso', 'PSO170G2651' => 'pso', 'PSO170G4354' => 'pso', 'PSO210G1196' => 'pso', 'PSO761G0367' => 'pso', 'PSO782G4022' => 'pso', 'QL02p100173' => 'qlo', 'QL11p005109' => 'qlo', 'QL12p018829' => 'qlo', 'RcHm_v2.0_Chr1g0317081' => 'rch', 'RcHm_v2.0_Chr1g0346861' => 'rch', 'RcHm_v2.0_Chr3g0487011' => 'rch', 'RcHm_v2.0_Chr4g0387891' => 'rch', 'RcHm_v2.0_Chr4g0400851' => 'rch', 'RcHm_v2.0_Chr5g0059041' => 'rch', 'Rhsim01G0292400' => 'rsi', 'Rhsim02G0076500' => 'rsi', 'Rhsim05G0118200' => 'rsi', 'Rhsim09G0002000' => 'rsi', 'Rhsim09G0190600' => 'rsi', 'Rhsim09G0190800' => 'rsi', 'Rhsim11G0124900' => 'rsi', 'Rhsim11G0125100' => 'rsi', 'Rhsim13G0040200' => 'rsi', 'RhsimUnG0217600' => 'rsi', 'RhsimUnG0217800' => 'rsi', 'RhsimUnG0218000' => 'rsi', 'Sabra06G0127400' => 'sbr', 'Sabra14G0087300' => 'sbr', 'SalBow1G5435' => 'sbo', 'SalBow3G1717' => 'sbo', 'SalBow3G3994' => 'sbo', 'Sc04g0003500' => 'sci', 'Sc04g0010540' => 'sci', 'Sc07g0004590' => 'sci', 'Sed0014348' => 'sed', 'Sed0018517' => 'sed', 'Sed0023884' => 'sed', 'SEGI_16917' => 'sgi', 'SEGI_17633' => 'sgi', 'SEGI_34300' => 'sgi', 'SEGI_35309' => 'sgi', 'SEGI_41551' => 'sgi', 'SGA_v2.0_scaffold42G15913' => 'sas', 'SGA_v2.0_scaffold80G25718' => 'sas', 'SGA_v2.0_scaffold8G04434' => 'sas', 'SHI34758' => 'shi', 'SMO024G0001' => 'smo', 'SMO118G0472' => 'smo', 'SMO144G0019' => 'smo', 'SMO347G0287' => 'smo', 'Solyc01g079220.4' => 'sly', 'Solyc01g103710.4' => 'sly', 'Solyc05g044630.3' => 'sly', 'Sopen01g031000' => 'spe', 'Sopen01g046120' => 'spe', 'Sopen05g026930' => 'spe', 'Sp6g01820' => 'spa', 'Sp6g11560' => 'spa', 'Sp7g23940' => 'spa', 'TAR365G0959' => 'tar', 'TAR381G0191' => 'tar', 'TAR626G1426' => 'tar', 'TAR628G1090' => 'tar', 'TAR633G1054' => 'tar', 'THA.LOC104799819' => 'tha', 'THA.LOC104801311' => 'tha', 'THA.LOC104817786' => 'tha', 'Thecc.01G318700' => 'tca', 'Thecc.02G023300' => 'tca', 'Thecc.09G178200' => 'tca', 'Thhalv10014572m.g' => 'esa', 'Thhalv10026125m.g' => 'esa', 'Thhalv10028839m.g' => 'esa', 'TPR.G2150' => 'tpr', 'TPR.G4072' => 'tpr', 'TPR.G9244' => 'tpr', 'TWI14G0226' => 'twi', 'TWI34G1171' => 'twi', 'TWI59G1035' => 'twi', 'unitig_62.g23130' => 'ugi', 'unitig_62.g23905' => 'ugi', 'unitig_699.g19850' => 'ugi', 'unitig_747.g21265' => 'ugi', 'vmacro15099' => 'vma', 'vmacro17581' => 'vma', 'vmacro19870' => 'vma', 'VMungo0540G0123' => 'vmu', 'VMungo1309G0577' => 'vmu', 'VMungo1383G1372' => 'vmu', 'VMungo1383G1795' => 'vmu', 'Zm00001eb015070' => 'zma', 'Zm00001eb201220' => 'zma', 'Zm00001eb273230' => 'zma' ) ) $data_type = 'gene_family' $gf_id = 'HOM05D001654' $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D001654' ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $subfamily_family_types = array( (int) 0 => 'ORTHOFAM' ) $parental_family_types = array( (int) 0 => 'HOMFAM' ) $gene_family_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $allowed_data_types = array( 'GO' => 'Gene Ontology', 'INTERPRO' => 'InterPro', 'GENE_FAMILY' => 'Gene Family' ) $data_identifier_value = 'HOM05D001654' $data_identifier_description = '' $adt_title = 'Gene Family' $adt = 'GENE_FAMILY' $is_selected = 'selected='selected'' $parameter = array( 'data_type' => 'GENE_FAMILY', 'data_value' => 'HOM05D001654' )include - APP/View/Tools/similarity_heatmap.ctp, line 77 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::render() - CORE/Cake/View/View.php, line 473 Controller::render() - CORE/Cake/Controller/Controller.php, line 963 Dispatcher::_invoke() - CORE/Cake/Routing/Dispatcher.php, line 200 Dispatcher::dispatch() - CORE/Cake/Routing/Dispatcher.php, line 167 [main] - APP/webroot/index.php, line 151
Warning (2): Invalid argument supplied for foreach() [APP/View/Tools/similarity_heatmap.ctp, line 77]Code Context <label>Source(s)</label> <select class='form form-select' name='ontology_source_group' id='ontology_source_group'> <?php foreach ($source_groups_information['available'] as $source_group_id) : ?> $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Tools/similarity_heatmap.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D001654', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '391', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'gene_selection' => array( 'parameters' => array( (int) 0 => array( [maximum depth reached] ) ), 'genes' => array( 'A01p17190' => 'bna', 'A03p27570' => 'bna', 'A03p31360' => 'bna', 'A10p08660' => 'bna', 'Aa31LG3G290' => 'aar', 'Aa31LG3G300' => 'aar', 'Aa31LG3G6750' => 'aar', 'Aa31LG5G1590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4644' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1124' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1480' => 'aag', 'Actinidia02507' => 'ach', 'Actinidia06471' => 'ach', 'Actinidia25865' => 'ach', 'Actinidia26164' => 'ach', 'Ah.09g230010' => 'amhyb', 'AL6G51350' => 'aly', 'AL7G27100' => 'aly', 'AL8G23890' => 'aly', 'Aqoxy2G02641' => 'aox', 'Aqoxy6G00125' => 'aox', 'Aqoxy7G02984' => 'aox', 'arahy.Tifrunner.gnm1.ann1.G1RM5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKF9WG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS0PB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1V4H7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UW8EWK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZIY6TR' => 'arhy', 'AT4G01940' => 'ath', 'AT4G25910' => 'ath', 'AT5G49940' => 'ath', 'ATR0580G236' => 'atr', 'ATR0693G051' => 'atr', 'ATR1134G081' => 'atr', 'Atru.chr5.945' => 'acertr', 'Atru.chr6.763' => 'acertr', 'Atru.chr7.837' => 'acertr', 'AUR62011756' => 'cqu', 'AUR62021316' => 'cqu', 'AUR62022780' => 'cqu', 'AUR62024601' => 'cqu', 'AUR62033233' => 'cqu', 'BcaB01g02401' => 'bca', 'BcaB01g02931' => 'bca', 'BcaB01g02932' => 'bca', 'BcaB08g35376' => 'bca', 'BcaC01g04843' => 'bca', 'BcaC01g06789' => 'bca', 'BcaC04g20838' => 'bca', 'BcaC09g50733' => 'bca', 'BcaNung03768' => 'bca', 'BolC1t02071H' => 'bol', 'BolC3t15650H' => 'bol', 'BolC3t16108H' => 'bol', 'BolC9t56717H' => 'bol', 'BraA01t01675Z' => 'bra', 'BraA03t11970Z' => 'bra', 'BraA03t12316Z' => 'bra', 'BraSC37t46137Z' => 'bra', 'C01p21510' => 'bna', 'C03p33280' => 'bna', 'C03p38270' => 'bna', 'C09p38620' => 'bna', 'CAN.G293.5' => 'can', 'CAN.G798.52' => 'can', 'CAN.G97.7' => 'can', 'CANSAT11G1414' => 'cansat', 'CANSAT25G2218' => 'cansat', 'CANSAT54G0695' => 'cansat', 'CARHR233380' => 'chi', 'CARHR249740' => 'chi', 'CARHR258780' => 'chi', 'Carub.0006s3529' => 'cru', 'Carub.0007s1504' => 'cru', 'Carub.0008s0982' => 'cru', 'Ca_00046_v3' => 'car', 'Ca_02035_v3' => 'car', 'Ca_09225_v3' => 'car', 'CBR_g3282' => 'cbr', 'CBR_g39901' => 'cbr', 'CBR_g4584' => 'cbr', 'Cc01_g21660' => 'ccan', 'Cc02_g23000' => 'ccan', 'Cc05_g08650' => 'ccan', 'CDE02G0161' => 'cde', 'CDE05G0483' => 'cde', 'CDE07G0634' => 'cde', 'CDE08G1347' => 'cde', 'CDE11G0536' => 'cde', 'Cfa001520' => 'cfa', 'Cfa004509' => 'cfa', 'Cfa013406' => 'cfa', 'Ciclev10002359m.g' => 'ccl', 'Ciclev10009375m.g' => 'ccl', 'Ciclev10022131m.g' => 'ccl', 'CiPaw.01G010200' => 'cil', 'CiPaw.05G005900' => 'cil', 'CiPaw.06G173000' => 'cil', 'CiPaw.07G120500' => 'cil', 'CiPaw.07G194400' => 'cil', 'CiPaw.10G108200' => 'cil', 'ClCG02G019990' => 'cla', 'ClCG09G004900' => 'cla', 'ClCG09G022880' => 'cla', 'ClCG10G007540' => 'cla', 'ClCG11G011960' => 'cla', 'ClCG11G013330' => 'cla', 'COL.COLO4_06000' => 'col', 'COL.COLO4_17741' => 'col', 'COL.COLO4_23188' => 'col', 'Cpa.g.c34934.1' => 'cpa', 'Cpa.g.sc18.96' => 'cpa', 'Cpa.g.sc18.98' => 'cpa', 'Cpa.g.sc30.41' => 'cpa', 'Cre17.g710800' => 'cre', 'Cre18.g748447' => 'cre', 'CsaV3_2G008550' => 'csa', 'CsaV3_5G029830' => 'csa', 'CsaV3_6G016690' => 'csa', 'CsaV3_7G030190' => 'csa', 'CSS0008228' => 'camsi', 'CSS0009235' => 'camsi', 'CSS0034043' => 'camsi', 'CSS0038161' => 'camsi', 'CSS0043588' => 'camsi', 'DCAR_002908' => 'dca', 'DCAR_014691' => 'dca', 'DCAR_017986' => 'dca', 'DCAR_029272' => 'dca', 'Dinv00086' => 'din', 'Dinv07475' => 'din', 'Dinv12117' => 'din', 'Dinv19399' => 'din', 'Dinv19562' => 'din', 'Duzib052G1033' => 'dzi', 'Duzib138G0592' => 'dzi', 'Duzib150G1318' => 'dzi', 'Duzib170G0717' => 'dzi', 'Duzib248G1383' => 'dzi', 'ECA236G3292' => 'eca', 'ECA240G1393' => 'eca', 'ECA247G3538' => 'eca', 'EL10Ac1g02279' => 'bvu', 'EL10Ac4g08741' => 'bvu', 'EL10Ac5g11549' => 'bvu', 'EL10Ac5g11749' => 'bvu', 'EL10Ac8g18301' => 'bvu', 'EL10As5g23607' => 'bvu', 'Eucgr.C02388' => 'egr', 'Eucgr.G00348' => 'egr', 'Eucgr.H00910' => 'egr', 'FAN01G0458' => 'fan', 'FAN01G1194' => 'fan', 'FAN03G0897' => 'fan', 'FAN06G2452' => 'fan', 'FAN07G2725' => 'fan', 'FAN10G2163' => 'fan', 'FAN12G1553' => 'fan', 'FAN19G0421' => 'fan', 'FAN23G2580' => 'fan', 'FAN28G2334' => 'fan', 'FvH4_1g26790' => 'fve', 'FvH4_4g07770' => 'fve', 'FvH4_7g01380' => 'fve', 'Glyma.09G056800' => 'gma', 'Glyma.12G167700' => 'gma', 'Glyma.15G163100' => 'gma', 'Glyma.19G218400' => 'gma', 'Gohir.A01G182600' => 'ghi', 'Gohir.A04G132800' => 'ghi', 'Gohir.A05G003800' => 'ghi', 'Gohir.A12G123100' => 'ghi', 'Gohir.D01G173700' => 'ghi', 'Gohir.D04G176400' => 'ghi', 'Gohir.D05G004200' => 'ghi', 'Gohir.D12G126700' => 'ghi', 'Gorai.002G215800' => 'gra', 'Gorai.008G137600' => 'gra', 'Gorai.009G003900' => 'gra', 'Gorai.012G168000' => 'gra', 'GSVIVG01023274001' => 'vvi', 'GSVIVG01028158001' => 'vvi', 'GSVIVG01029242001' => 'vvi', 'HanXRQChr07g0202151' => 'han', 'HanXRQChr10g0284781' => 'han', 'HanXRQChr10g0294531' => 'han', 'Haze_10065' => 'cav', 'Haze_10068' => 'cav', 'Haze_17021' => 'cav', 'Haze_21951' => 'cav', 'Hma1.2p1_0427F.1_g150720' => 'hma', 'Hma1.2p1_0965F.1_g242110' => 'hma', 'Hma1.2p1_0965F.1_g242120' => 'hma', 'Hma1.2p1_1086F.1_g255470' => 'hma', 'HPP92_010771' => 'vpl', 'HPP92_019385' => 'vpl', 'Hund02947' => 'sun', 'Hund09037' => 'sun', 'Hund15487' => 'sun', 'Lalb_Chr04g0260031' => 'lal', 'Lalb_Chr04g0264711' => 'lal', 'Lalb_Chr15g0084031' => 'lal', 'Lj1g0022661' => 'lja', 'Lj2A1210G30' => 'lonja', 'Lj6g0011770' => 'lja', 'Lj6g0014097' => 'lja', 'Lj9A300T37' => 'lonja', 'Lju50A10T17' => 'lonja', 'Lsat_1_v5_gn_7_53861' => 'lsa', 'Lsat_1_v5_gn_7_76401' => 'lsa', 'Lsat_1_v5_gn_8_76661' => 'lsa', 'Manes.02G223600' => 'mes', 'Manes.05G012600' => 'mes', 'Manes.10G119902' => 'mes', 'Manes.13G117402' => 'mes', 'Manes.14G157474' => 'mes', 'Mapoly0019s0107' => 'mpo', 'Mapoly0190s0016' => 'mpo', 'MBI05_g32509_MAGBIO' => 'mbi', 'MBI11_g32071_MAGBIO' => 'mbi', 'MBI14_g08137_MAGBIO' => 'mbi', 'MBI18_g12613_MAGBIO' => 'mbi', 'MBI18_g30542_MAGBIO' => 'mbi', 'MBI19_g03284_MAGBIO' => 'mbi', 'MCO13G021' => 'mco', 'MD08G1240400' => 'mdo', 'MD09G1286600' => 'mdo', 'MD15G1433600' => 'mdo', 'MD16G1254000' => 'mdo', 'MD16G1254100' => 'mdo', 'MD17G1279000' => 'mdo', 'Medtr2g005900' => 'mtr', 'Medtr2g036690' => 'mtr', 'Medtr7g109850' => 'mtr', 'MELO3C004002.2' => 'cme', 'MELO3C011825.2' => 'cme', 'MELO3C015905.2' => 'cme', 'Migut.B00787' => 'egut', 'Migut.D00055' => 'egut', 'Migut.M00235' => 'egut', 'Migut.N00825' => 'egut', 'MSTRG.15077' => 'ama', 'MSTRG.21710' => 'ama', 'MSTRG.5213' => 'ama', 'Nitab4.5_0000006g0140' => 'nta', 'Nitab4.5_0000222g0090' => 'nta', 'Nitab4.5_0000667g0090' => 'nta', 'Nitab4.5_0000948g0080' => 'nta', 'Nitab4.5_0002550g0010' => 'nta', 'Nitab4.5_0002596g0070' => 'nta', 'Nitab4.5_0010752g0010' => 'nta', 'Nitab4.5_0013295g0010' => 'nta', 'Nn1g08385' => 'nnu', 'Nn2g10632' => 'nnu', 'Nn2g13424' => 'nnu', 'Nn3g21818' => 'nnu', 'Oeu000129.1' => 'oeu', 'Oeu004408.1' => 'oeu', 'Oeu008488.1' => 'oeu', 'Oeu008489.1' => 'oeu', 'Oeu038049.1' => 'oeu', 'Oeu045933.1' => 'oeu', 'Oeu056020.2' => 'oeu', 'Os03g0314700' => 'osa', 'Os06g0694500' => 'osa', 'Os11g0181500' => 'osa', 'Os12g0176200' => 'osa', 'Peaxi162Scf00002g02411' => 'pax', 'Peaxi162Scf00011g00933' => 'pax', 'Peaxi162Scf00462g00042' => 'pax', 'Peaxi162Scf00770g00013' => 'pax', 'PGR042G3227' => 'pgr', 'PGR044G0478' => 'pgr', 'PGR044G1571' => 'pgr', 'PGR083G0503' => 'pgr', 'PGSC0003DMG400005276' => 'stu', 'PGSC0003DMG400009020' => 'stu', 'PGSC0003DMG400024898' => 'stu', 'Phvul.001G214800' => 'pvu', 'Phvul.006G218300' => 'pvu', 'Phvul.009G238700' => 'pvu', 'Potri.002G192200' => 'ptr', 'Potri.003G009300' => 'ptr', 'Potri.004G222600' => 'ptr', 'Potri.006G165600' => 'ptr', 'Potri.014G117700' => 'ptr', 'Pp3c14_19650' => 'ppa', 'Pp3c2_23200' => 'ppa', 'PRCOL_00002783' => 'pco', 'PRCOL_00005187' => 'pco', 'Prupe.1G081800' => 'ppe', 'Prupe.1G577000' => 'ppe', 'Prupe.3G007000' => 'ppe', 'Prupe.6G008100' => 'ppe', 'Psat1g146960' => 'psa', 'Psat1g223440' => 'psa', 'Psat3g019000' => 'psa', 'PSO063G5418' => 'pso', 'PSO170G2651' => 'pso', 'PSO170G4354' => 'pso', 'PSO210G1196' => 'pso', 'PSO761G0367' => 'pso', 'PSO782G4022' => 'pso', 'QL02p100173' => 'qlo', 'QL11p005109' => 'qlo', 'QL12p018829' => 'qlo', 'RcHm_v2.0_Chr1g0317081' => 'rch', 'RcHm_v2.0_Chr1g0346861' => 'rch', 'RcHm_v2.0_Chr3g0487011' => 'rch', 'RcHm_v2.0_Chr4g0387891' => 'rch', 'RcHm_v2.0_Chr4g0400851' => 'rch', 'RcHm_v2.0_Chr5g0059041' => 'rch', 'Rhsim01G0292400' => 'rsi', 'Rhsim02G0076500' => 'rsi', 'Rhsim05G0118200' => 'rsi', 'Rhsim09G0002000' => 'rsi', 'Rhsim09G0190600' => 'rsi', 'Rhsim09G0190800' => 'rsi', 'Rhsim11G0124900' => 'rsi', 'Rhsim11G0125100' => 'rsi', 'Rhsim13G0040200' => 'rsi', 'RhsimUnG0217600' => 'rsi', 'RhsimUnG0217800' => 'rsi', 'RhsimUnG0218000' => 'rsi', 'Sabra06G0127400' => 'sbr', 'Sabra14G0087300' => 'sbr', 'SalBow1G5435' => 'sbo', 'SalBow3G1717' => 'sbo', 'SalBow3G3994' => 'sbo', 'Sc04g0003500' => 'sci', 'Sc04g0010540' => 'sci', 'Sc07g0004590' => 'sci', 'Sed0014348' => 'sed', 'Sed0018517' => 'sed', 'Sed0023884' => 'sed', 'SEGI_16917' => 'sgi', 'SEGI_17633' => 'sgi', 'SEGI_34300' => 'sgi', 'SEGI_35309' => 'sgi', 'SEGI_41551' => 'sgi', 'SGA_v2.0_scaffold42G15913' => 'sas', 'SGA_v2.0_scaffold80G25718' => 'sas', 'SGA_v2.0_scaffold8G04434' => 'sas', 'SHI34758' => 'shi', 'SMO024G0001' => 'smo', 'SMO118G0472' => 'smo', 'SMO144G0019' => 'smo', 'SMO347G0287' => 'smo', 'Solyc01g079220.4' => 'sly', 'Solyc01g103710.4' => 'sly', 'Solyc05g044630.3' => 'sly', 'Sopen01g031000' => 'spe', 'Sopen01g046120' => 'spe', 'Sopen05g026930' => 'spe', 'Sp6g01820' => 'spa', 'Sp6g11560' => 'spa', 'Sp7g23940' => 'spa', 'TAR365G0959' => 'tar', 'TAR381G0191' => 'tar', 'TAR626G1426' => 'tar', 'TAR628G1090' => 'tar', 'TAR633G1054' => 'tar', 'THA.LOC104799819' => 'tha', 'THA.LOC104801311' => 'tha', 'THA.LOC104817786' => 'tha', 'Thecc.01G318700' => 'tca', 'Thecc.02G023300' => 'tca', 'Thecc.09G178200' => 'tca', 'Thhalv10014572m.g' => 'esa', 'Thhalv10026125m.g' => 'esa', 'Thhalv10028839m.g' => 'esa', 'TPR.G2150' => 'tpr', 'TPR.G4072' => 'tpr', 'TPR.G9244' => 'tpr', 'TWI14G0226' => 'twi', 'TWI34G1171' => 'twi', 'TWI59G1035' => 'twi', 'unitig_62.g23130' => 'ugi', 'unitig_62.g23905' => 'ugi', 'unitig_699.g19850' => 'ugi', 'unitig_747.g21265' => 'ugi', 'vmacro15099' => 'vma', 'vmacro17581' => 'vma', 'vmacro19870' => 'vma', 'VMungo0540G0123' => 'vmu', 'VMungo1309G0577' => 'vmu', 'VMungo1383G1372' => 'vmu', 'VMungo1383G1795' => 'vmu', 'Zm00001eb015070' => 'zma', 'Zm00001eb201220' => 'zma', 'Zm00001eb273230' => 'zma' ) ), 'data_type' => 'gene_family', 'gf_id' => 'HOM05D001654', 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D001654' ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'subfamily_family_types' => array( (int) 0 => 'ORTHOFAM' ), 'parental_family_types' => array( (int) 0 => 'HOMFAM' ), 'gene_family_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'allowed_data_types' => array( 'GO' => 'Gene Ontology', 'INTERPRO' => 'InterPro', 'GENE_FAMILY' => 'Gene Family' ) ) $sidebar_info = array( 'gf_id' => 'HOM05D001654', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '391', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $gene_selection = array( 'parameters' => array( (int) 0 => array( 'data_type' => 'GENE_FAMILY', 'data_value' => 'HOM05D001654' ) ), 'genes' => array( 'A01p17190' => 'bna', 'A03p27570' => 'bna', 'A03p31360' => 'bna', 'A10p08660' => 'bna', 'Aa31LG3G290' => 'aar', 'Aa31LG3G300' => 'aar', 'Aa31LG3G6750' => 'aar', 'Aa31LG5G1590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4644' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1124' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1480' => 'aag', 'Actinidia02507' => 'ach', 'Actinidia06471' => 'ach', 'Actinidia25865' => 'ach', 'Actinidia26164' => 'ach', 'Ah.09g230010' => 'amhyb', 'AL6G51350' => 'aly', 'AL7G27100' => 'aly', 'AL8G23890' => 'aly', 'Aqoxy2G02641' => 'aox', 'Aqoxy6G00125' => 'aox', 'Aqoxy7G02984' => 'aox', 'arahy.Tifrunner.gnm1.ann1.G1RM5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKF9WG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS0PB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1V4H7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UW8EWK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZIY6TR' => 'arhy', 'AT4G01940' => 'ath', 'AT4G25910' => 'ath', 'AT5G49940' => 'ath', 'ATR0580G236' => 'atr', 'ATR0693G051' => 'atr', 'ATR1134G081' => 'atr', 'Atru.chr5.945' => 'acertr', 'Atru.chr6.763' => 'acertr', 'Atru.chr7.837' => 'acertr', 'AUR62011756' => 'cqu', 'AUR62021316' => 'cqu', 'AUR62022780' => 'cqu', 'AUR62024601' => 'cqu', 'AUR62033233' => 'cqu', 'BcaB01g02401' => 'bca', 'BcaB01g02931' => 'bca', 'BcaB01g02932' => 'bca', 'BcaB08g35376' => 'bca', 'BcaC01g04843' => 'bca', 'BcaC01g06789' => 'bca', 'BcaC04g20838' => 'bca', 'BcaC09g50733' => 'bca', 'BcaNung03768' => 'bca', 'BolC1t02071H' => 'bol', 'BolC3t15650H' => 'bol', 'BolC3t16108H' => 'bol', 'BolC9t56717H' => 'bol', 'BraA01t01675Z' => 'bra', 'BraA03t11970Z' => 'bra', 'BraA03t12316Z' => 'bra', 'BraSC37t46137Z' => 'bra', 'C01p21510' => 'bna', 'C03p33280' => 'bna', 'C03p38270' => 'bna', 'C09p38620' => 'bna', 'CAN.G293.5' => 'can', 'CAN.G798.52' => 'can', 'CAN.G97.7' => 'can', 'CANSAT11G1414' => 'cansat', 'CANSAT25G2218' => 'cansat', 'CANSAT54G0695' => 'cansat', 'CARHR233380' => 'chi', 'CARHR249740' => 'chi', 'CARHR258780' => 'chi', 'Carub.0006s3529' => 'cru', 'Carub.0007s1504' => 'cru', 'Carub.0008s0982' => 'cru', 'Ca_00046_v3' => 'car', 'Ca_02035_v3' => 'car', 'Ca_09225_v3' => 'car', 'CBR_g3282' => 'cbr', 'CBR_g39901' => 'cbr', 'CBR_g4584' => 'cbr', 'Cc01_g21660' => 'ccan', 'Cc02_g23000' => 'ccan', 'Cc05_g08650' => 'ccan', 'CDE02G0161' => 'cde', 'CDE05G0483' => 'cde', 'CDE07G0634' => 'cde', 'CDE08G1347' => 'cde', 'CDE11G0536' => 'cde', 'Cfa001520' => 'cfa', 'Cfa004509' => 'cfa', 'Cfa013406' => 'cfa', 'Ciclev10002359m.g' => 'ccl', 'Ciclev10009375m.g' => 'ccl', 'Ciclev10022131m.g' => 'ccl', 'CiPaw.01G010200' => 'cil', 'CiPaw.05G005900' => 'cil', 'CiPaw.06G173000' => 'cil', 'CiPaw.07G120500' => 'cil', 'CiPaw.07G194400' => 'cil', 'CiPaw.10G108200' => 'cil', 'ClCG02G019990' => 'cla', 'ClCG09G004900' => 'cla', 'ClCG09G022880' => 'cla', 'ClCG10G007540' => 'cla', 'ClCG11G011960' => 'cla', 'ClCG11G013330' => 'cla', 'COL.COLO4_06000' => 'col', 'COL.COLO4_17741' => 'col', 'COL.COLO4_23188' => 'col', 'Cpa.g.c34934.1' => 'cpa', 'Cpa.g.sc18.96' => 'cpa', 'Cpa.g.sc18.98' => 'cpa', 'Cpa.g.sc30.41' => 'cpa', 'Cre17.g710800' => 'cre', 'Cre18.g748447' => 'cre', 'CsaV3_2G008550' => 'csa', 'CsaV3_5G029830' => 'csa', 'CsaV3_6G016690' => 'csa', 'CsaV3_7G030190' => 'csa', 'CSS0008228' => 'camsi', 'CSS0009235' => 'camsi', 'CSS0034043' => 'camsi', 'CSS0038161' => 'camsi', 'CSS0043588' => 'camsi', 'DCAR_002908' => 'dca', 'DCAR_014691' => 'dca', 'DCAR_017986' => 'dca', 'DCAR_029272' => 'dca', 'Dinv00086' => 'din', 'Dinv07475' => 'din', 'Dinv12117' => 'din', 'Dinv19399' => 'din', 'Dinv19562' => 'din', 'Duzib052G1033' => 'dzi', 'Duzib138G0592' => 'dzi', 'Duzib150G1318' => 'dzi', 'Duzib170G0717' => 'dzi', 'Duzib248G1383' => 'dzi', 'ECA236G3292' => 'eca', 'ECA240G1393' => 'eca', 'ECA247G3538' => 'eca', 'EL10Ac1g02279' => 'bvu', 'EL10Ac4g08741' => 'bvu', 'EL10Ac5g11549' => 'bvu', 'EL10Ac5g11749' => 'bvu', 'EL10Ac8g18301' => 'bvu', 'EL10As5g23607' => 'bvu', 'Eucgr.C02388' => 'egr', 'Eucgr.G00348' => 'egr', 'Eucgr.H00910' => 'egr', 'FAN01G0458' => 'fan', 'FAN01G1194' => 'fan', 'FAN03G0897' => 'fan', 'FAN06G2452' => 'fan', 'FAN07G2725' => 'fan', 'FAN10G2163' => 'fan', 'FAN12G1553' => 'fan', 'FAN19G0421' => 'fan', 'FAN23G2580' => 'fan', 'FAN28G2334' => 'fan', 'FvH4_1g26790' => 'fve', 'FvH4_4g07770' => 'fve', 'FvH4_7g01380' => 'fve', 'Glyma.09G056800' => 'gma', 'Glyma.12G167700' => 'gma', 'Glyma.15G163100' => 'gma', 'Glyma.19G218400' => 'gma', 'Gohir.A01G182600' => 'ghi', 'Gohir.A04G132800' => 'ghi', 'Gohir.A05G003800' => 'ghi', 'Gohir.A12G123100' => 'ghi', 'Gohir.D01G173700' => 'ghi', 'Gohir.D04G176400' => 'ghi', 'Gohir.D05G004200' => 'ghi', 'Gohir.D12G126700' => 'ghi', 'Gorai.002G215800' => 'gra', 'Gorai.008G137600' => 'gra', 'Gorai.009G003900' => 'gra', 'Gorai.012G168000' => 'gra', 'GSVIVG01023274001' => 'vvi', 'GSVIVG01028158001' => 'vvi', 'GSVIVG01029242001' => 'vvi', 'HanXRQChr07g0202151' => 'han', 'HanXRQChr10g0284781' => 'han', 'HanXRQChr10g0294531' => 'han', 'Haze_10065' => 'cav', 'Haze_10068' => 'cav', 'Haze_17021' => 'cav', 'Haze_21951' => 'cav', 'Hma1.2p1_0427F.1_g150720' => 'hma', 'Hma1.2p1_0965F.1_g242110' => 'hma', 'Hma1.2p1_0965F.1_g242120' => 'hma', 'Hma1.2p1_1086F.1_g255470' => 'hma', 'HPP92_010771' => 'vpl', 'HPP92_019385' => 'vpl', 'Hund02947' => 'sun', 'Hund09037' => 'sun', 'Hund15487' => 'sun', 'Lalb_Chr04g0260031' => 'lal', 'Lalb_Chr04g0264711' => 'lal', 'Lalb_Chr15g0084031' => 'lal', 'Lj1g0022661' => 'lja', 'Lj2A1210G30' => 'lonja', 'Lj6g0011770' => 'lja', 'Lj6g0014097' => 'lja', 'Lj9A300T37' => 'lonja', 'Lju50A10T17' => 'lonja', 'Lsat_1_v5_gn_7_53861' => 'lsa', 'Lsat_1_v5_gn_7_76401' => 'lsa', 'Lsat_1_v5_gn_8_76661' => 'lsa', 'Manes.02G223600' => 'mes', 'Manes.05G012600' => 'mes', 'Manes.10G119902' => 'mes', 'Manes.13G117402' => 'mes', 'Manes.14G157474' => 'mes', 'Mapoly0019s0107' => 'mpo', 'Mapoly0190s0016' => 'mpo', 'MBI05_g32509_MAGBIO' => 'mbi', 'MBI11_g32071_MAGBIO' => 'mbi', 'MBI14_g08137_MAGBIO' => 'mbi', 'MBI18_g12613_MAGBIO' => 'mbi', 'MBI18_g30542_MAGBIO' => 'mbi', 'MBI19_g03284_MAGBIO' => 'mbi', 'MCO13G021' => 'mco', 'MD08G1240400' => 'mdo', 'MD09G1286600' => 'mdo', 'MD15G1433600' => 'mdo', 'MD16G1254000' => 'mdo', 'MD16G1254100' => 'mdo', 'MD17G1279000' => 'mdo', 'Medtr2g005900' => 'mtr', 'Medtr2g036690' => 'mtr', 'Medtr7g109850' => 'mtr', 'MELO3C004002.2' => 'cme', 'MELO3C011825.2' => 'cme', 'MELO3C015905.2' => 'cme', 'Migut.B00787' => 'egut', 'Migut.D00055' => 'egut', 'Migut.M00235' => 'egut', 'Migut.N00825' => 'egut', 'MSTRG.15077' => 'ama', 'MSTRG.21710' => 'ama', 'MSTRG.5213' => 'ama', 'Nitab4.5_0000006g0140' => 'nta', 'Nitab4.5_0000222g0090' => 'nta', 'Nitab4.5_0000667g0090' => 'nta', 'Nitab4.5_0000948g0080' => 'nta', 'Nitab4.5_0002550g0010' => 'nta', 'Nitab4.5_0002596g0070' => 'nta', 'Nitab4.5_0010752g0010' => 'nta', 'Nitab4.5_0013295g0010' => 'nta', 'Nn1g08385' => 'nnu', 'Nn2g10632' => 'nnu', 'Nn2g13424' => 'nnu', 'Nn3g21818' => 'nnu', 'Oeu000129.1' => 'oeu', 'Oeu004408.1' => 'oeu', 'Oeu008488.1' => 'oeu', 'Oeu008489.1' => 'oeu', 'Oeu038049.1' => 'oeu', 'Oeu045933.1' => 'oeu', 'Oeu056020.2' => 'oeu', 'Os03g0314700' => 'osa', 'Os06g0694500' => 'osa', 'Os11g0181500' => 'osa', 'Os12g0176200' => 'osa', 'Peaxi162Scf00002g02411' => 'pax', 'Peaxi162Scf00011g00933' => 'pax', 'Peaxi162Scf00462g00042' => 'pax', 'Peaxi162Scf00770g00013' => 'pax', 'PGR042G3227' => 'pgr', 'PGR044G0478' => 'pgr', 'PGR044G1571' => 'pgr', 'PGR083G0503' => 'pgr', 'PGSC0003DMG400005276' => 'stu', 'PGSC0003DMG400009020' => 'stu', 'PGSC0003DMG400024898' => 'stu', 'Phvul.001G214800' => 'pvu', 'Phvul.006G218300' => 'pvu', 'Phvul.009G238700' => 'pvu', 'Potri.002G192200' => 'ptr', 'Potri.003G009300' => 'ptr', 'Potri.004G222600' => 'ptr', 'Potri.006G165600' => 'ptr', 'Potri.014G117700' => 'ptr', 'Pp3c14_19650' => 'ppa', 'Pp3c2_23200' => 'ppa', 'PRCOL_00002783' => 'pco', 'PRCOL_00005187' => 'pco', 'Prupe.1G081800' => 'ppe', 'Prupe.1G577000' => 'ppe', 'Prupe.3G007000' => 'ppe', 'Prupe.6G008100' => 'ppe', 'Psat1g146960' => 'psa', 'Psat1g223440' => 'psa', 'Psat3g019000' => 'psa', 'PSO063G5418' => 'pso', 'PSO170G2651' => 'pso', 'PSO170G4354' => 'pso', 'PSO210G1196' => 'pso', 'PSO761G0367' => 'pso', 'PSO782G4022' => 'pso', 'QL02p100173' => 'qlo', 'QL11p005109' => 'qlo', 'QL12p018829' => 'qlo', 'RcHm_v2.0_Chr1g0317081' => 'rch', 'RcHm_v2.0_Chr1g0346861' => 'rch', 'RcHm_v2.0_Chr3g0487011' => 'rch', 'RcHm_v2.0_Chr4g0387891' => 'rch', 'RcHm_v2.0_Chr4g0400851' => 'rch', 'RcHm_v2.0_Chr5g0059041' => 'rch', 'Rhsim01G0292400' => 'rsi', 'Rhsim02G0076500' => 'rsi', 'Rhsim05G0118200' => 'rsi', 'Rhsim09G0002000' => 'rsi', 'Rhsim09G0190600' => 'rsi', 'Rhsim09G0190800' => 'rsi', 'Rhsim11G0124900' => 'rsi', 'Rhsim11G0125100' => 'rsi', 'Rhsim13G0040200' => 'rsi', 'RhsimUnG0217600' => 'rsi', 'RhsimUnG0217800' => 'rsi', 'RhsimUnG0218000' => 'rsi', 'Sabra06G0127400' => 'sbr', 'Sabra14G0087300' => 'sbr', 'SalBow1G5435' => 'sbo', 'SalBow3G1717' => 'sbo', 'SalBow3G3994' => 'sbo', 'Sc04g0003500' => 'sci', 'Sc04g0010540' => 'sci', 'Sc07g0004590' => 'sci', 'Sed0014348' => 'sed', 'Sed0018517' => 'sed', 'Sed0023884' => 'sed', 'SEGI_16917' => 'sgi', 'SEGI_17633' => 'sgi', 'SEGI_34300' => 'sgi', 'SEGI_35309' => 'sgi', 'SEGI_41551' => 'sgi', 'SGA_v2.0_scaffold42G15913' => 'sas', 'SGA_v2.0_scaffold80G25718' => 'sas', 'SGA_v2.0_scaffold8G04434' => 'sas', 'SHI34758' => 'shi', 'SMO024G0001' => 'smo', 'SMO118G0472' => 'smo', 'SMO144G0019' => 'smo', 'SMO347G0287' => 'smo', 'Solyc01g079220.4' => 'sly', 'Solyc01g103710.4' => 'sly', 'Solyc05g044630.3' => 'sly', 'Sopen01g031000' => 'spe', 'Sopen01g046120' => 'spe', 'Sopen05g026930' => 'spe', 'Sp6g01820' => 'spa', 'Sp6g11560' => 'spa', 'Sp7g23940' => 'spa', 'TAR365G0959' => 'tar', 'TAR381G0191' => 'tar', 'TAR626G1426' => 'tar', 'TAR628G1090' => 'tar', 'TAR633G1054' => 'tar', 'THA.LOC104799819' => 'tha', 'THA.LOC104801311' => 'tha', 'THA.LOC104817786' => 'tha', 'Thecc.01G318700' => 'tca', 'Thecc.02G023300' => 'tca', 'Thecc.09G178200' => 'tca', 'Thhalv10014572m.g' => 'esa', 'Thhalv10026125m.g' => 'esa', 'Thhalv10028839m.g' => 'esa', 'TPR.G2150' => 'tpr', 'TPR.G4072' => 'tpr', 'TPR.G9244' => 'tpr', 'TWI14G0226' => 'twi', 'TWI34G1171' => 'twi', 'TWI59G1035' => 'twi', 'unitig_62.g23130' => 'ugi', 'unitig_62.g23905' => 'ugi', 'unitig_699.g19850' => 'ugi', 'unitig_747.g21265' => 'ugi', 'vmacro15099' => 'vma', 'vmacro17581' => 'vma', 'vmacro19870' => 'vma', 'VMungo0540G0123' => 'vmu', 'VMungo1309G0577' => 'vmu', 'VMungo1383G1372' => 'vmu', 'VMungo1383G1795' => 'vmu', 'Zm00001eb015070' => 'zma', 'Zm00001eb201220' => 'zma', 'Zm00001eb273230' => 'zma' ) ) $data_type = 'gene_family' $gf_id = 'HOM05D001654' $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D001654' ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $subfamily_family_types = array( (int) 0 => 'ORTHOFAM' ) $parental_family_types = array( (int) 0 => 'HOMFAM' ) $gene_family_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $allowed_data_types = array( 'GO' => 'Gene Ontology', 'INTERPRO' => 'InterPro', 'GENE_FAMILY' => 'Gene Family' ) $data_identifier_value = 'HOM05D001654' $data_identifier_description = '' $adt_title = 'Gene Family' $adt = 'GENE_FAMILY' $is_selected = 'selected='selected'' $parameter = array( 'data_type' => 'GENE_FAMILY', 'data_value' => 'HOM05D001654' )include - APP/View/Tools/similarity_heatmap.ctp, line 77 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::render() - CORE/Cake/View/View.php, line 473 Controller::render() - CORE/Cake/Controller/Controller.php, line 963 Dispatcher::_invoke() - CORE/Cake/Routing/Dispatcher.php, line 200 Dispatcher::dispatch() - CORE/Cake/Routing/Dispatcher.php, line 167 [main] - APP/webroot/index.php, line 151