Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SEGI_33976 Sequoiadendron giganteum HOM05D004413 ORTHO05D005199 8.4e-215 750.4 461 100.0
SEGI_10444 Sequoiadendron giganteum HOM05D004413 ORTHO05D005199 5.6e-158 561.6 368 100.0
SEGI_03996 Sequoiadendron giganteum HOM05D004413 ORTHO05D005199 1.7e-146 523.5 368 93.8
CANSAT64G0940 Cannabis sativa HOM05D004413 ORTHO05D005199 2.2e-66 257.3 301 48.5
Lalb_Chr19g0124241 Lupinus albus HOM05D004413 ORTHO05D005199 2.2e-66 257.3 282 48.2
Medtr6g463300 Medicago truncatula HOM05D004413 ORTHO05D005199 8.5e-66 255.4 305 46.9
Nn3g19386 Nelumbo nucifera HOM05D004413 ORTHO05D005199 1.6e-64 251.1 299 46.8
Lj2g0027526 Lotus japonicus HOM05D004413 ORTHO05D005199 2.1e-64 250.8 279 49.1
TPR.G37653 Trifolium pratense HOM05D004413 ORTHO05D005199 2.1e-64 250.8 280 47.5
TPR.G25309 Trifolium pratense HOM05D004413 ORTHO05D005199 2.7e-64 250.4 304 46.1
Sp1g03790 Schrenkiella parvula HOM05D004413 ORTHO05D005199 6.1e-64 249.2 292 47.9
FAN18G0644 Fragaria x ananassa HOM05D004413 ORTHO05D005199 3.0e-63 246.9 286 47.9
Lalb_Chr19g0124231 Lupinus albus HOM05D004413 ORTHO05D005199 4.0e-63 246.5 280 47.1
MD07G1003300 Malus domestica HOM05D004413 ORTHO05D005199 4.0e-63 246.5 280 48.6
arahy.Tifrunner.gnm1.ann1.8FHU3N Arachis hypogaea HOM05D004413 ORTHO05D005199 5.2e-63 246.1 280 46.8
Psat6g015760 Pisum sativum HOM05D004413 ORTHO05D005199 5.2e-63 246.1 305 44.3
Sc17g0005470 Simmondsia chinensis HOM05D004413 ORTHO05D005199 5.2e-63 246.1 302 45.0
arahy.Tifrunner.gnm1.ann1.X2RX6E Arachis hypogaea HOM05D004413 ORTHO05D005199 6.7e-63 245.7 280 46.8
RcHm_v2.0_Chr7g0230361 Rosa chinensis HOM05D004413 ORTHO05D005199 6.7e-63 245.7 283 48.4
Manes.10G150400 Manihot esculenta HOM05D004413 ORTHO05D005199 8.8e-63 245.4 292 45.5
Cpa.g.sc189.31 Carica papaya HOM05D004413 ORTHO05D005199 1.2e-62 245.0 284 47.9
Oeu013591.1 Olea europaea HOM05D004413 ORTHO05D005199 1.5e-62 244.6 302 46.4
FAN13G1137 Fragaria x ananassa HOM05D004413 ORTHO05D005199 2.6e-62 243.8 286 47.2
Psat1g110760 Pisum sativum HOM05D004413 ORTHO05D005199 2.6e-62 243.8 305 43.9
TAR636G2532 Trochodendron aralioides HOM05D004413 ORTHO05D005199 2.6e-62 243.8 280 48.9
Potri.001G228000 Populus trichocarpa HOM05D004413 ORTHO05D005199 3.3e-62 243.4 293 45.1
Cfa010719 Carpinus fangiana HOM05D004413 ORTHO05D005199 4.4e-62 243.0 280 48.2
GSVIVG01001402001 Vitis vinifera HOM05D004413 ORTHO05D005199 4.4e-62 243.0 285 46.0
Thhalv10007024m.g Eutrema salsugineum HOM05D004413 ORTHO05D005199 5.7e-62 242.7 295 44.4
CANSAT01G1789 Cannabis sativa HOM05D004413 ORTHO05D005199 9.7e-62 241.9 288 44.1
CANSAT01G0573 Cannabis sativa HOM05D004413 ORTHO05D005199 1.3e-61 241.5 288 44.1
Mapoly0103s0075 Marchantia polymorpha HOM05D004413 ORTHO05D005199 1.7e-61 241.1 288 45.8
MSTRG.28094 Avicennia marina HOM05D004413 ORTHO05D005199 2.2e-61 240.7 298 44.3
Pp3c11_18200 Physcomitrium patens HOM05D004413 ORTHO05D005199 2.8e-61 240.4 298 45.0
BcaB03g13464 Brassica carinata HOM05D004413 ORTHO05D005199 3.7e-61 240.0 283 49.1
A08p36630 Brassica napus HOM05D004413 ORTHO05D005199 4.8e-61 239.6 283 47.3
BraA08t35565Z Brassica rapa HOM05D004413 ORTHO05D005199 4.8e-61 239.6 283 47.3
FvH4_5g32720 Fragaria vesca HOM05D004413 ORTHO05D005199 4.8e-61 239.6 288 46.2
TWI09G1219 Tripterygium wilfordii HOM05D004413 ORTHO05D005199 6.3e-61 239.2 300 45.7
THA.LOC104826126 Tarenaya hassleriana HOM05D004413 ORTHO05D005199 8.2e-61 238.8 290 45.9
Haze_03259 Corylus avellana HOM05D004413 ORTHO05D005199 1.1e-60 238.4 284 47.2
Carub.0001s0418 Capsella rubella HOM05D004413 ORTHO05D005199 1.4e-60 238.0 282 47.5
PGR031G3941 Punica granatum HOM05D004413 ORTHO05D005199 1.4e-60 238.0 284 46.8
VMungo0464G1648 Vigna mungo HOM05D004413 ORTHO05D005199 1.4e-60 238.0 280 46.8
MD02G1318000 Malus domestica HOM05D004413 ORTHO05D005199 1.8e-60 237.7 280 46.4
Peaxi162Scf01343g00011 Petunia axillaris HOM05D004413 ORTHO05D005199 1.8e-60 237.7 298 44.6
Ca_02163_v3 Cicer arietinum L. HOM05D004413 ORTHO05D005199 3.1e-60 236.9 281 45.6
PSO210G0136 Papaver somniferum HOM05D004413 ORTHO05D005199 4.1e-60 236.5 285 44.9
FAN08G0618 Fragaria x ananassa HOM05D004413 ORTHO05D005199 5.3e-60 236.1 295 45.4
SGA_v2.0_scaffold95G28780 Striga asiatica HOM05D004413 ORTHO05D005199 5.3e-60 236.1 302 42.4
GSVIVG01037065001 Vitis vinifera HOM05D004413 ORTHO05D005199 5.3e-60 236.1 310 43.5
SMO351G0528 Selaginella moellendorffii HOM05D004413 ORTHO05D005199 7.0e-60 235.7 285 43.9
AT1G04945 Arabidopsis thaliana HOM05D004413 ORTHO05D005199 1.2e-59 235.0 285 46.0
Migut.N01644 Erythranthe guttata HOM05D004413 ORTHO05D005199 1.2e-59 235.0 281 45.6
Thecc.01G415800 Theobroma cacao HOM05D004413 ORTHO05D005199 1.2e-59 235.0 288 46.9
Atru.chr11.2687 Acer truncatum HOM05D004413 ORTHO05D005199 1.6e-59 234.6 299 43.1
Aa31LG1G19950 Aethionema arabicum HOM05D004413 ORTHO05D005199 1.6e-59 234.6 291 46.4
Glyma.09G152600 Glycine max HOM05D004413 ORTHO05D005199 1.6e-59 234.6 280 45.4
BcaC07g36870 Brassica carinata HOM05D004413 ORTHO05D005199 2.0e-59 234.2 281 47.0
CSS0018065 Camellia sinensis var. sinensis HOM05D004413 ORTHO05D005199 2.0e-59 234.2 280 46.8
CDE04G1207 Ceratophyllum demersum HOM05D004413 ORTHO05D005199 3.5e-59 233.4 283 44.9
AUR62035034 Chenopodium quinoa HOM05D004413 ORTHO05D005199 4.5e-59 233.0 288 41.7
C08p01610 Brassica napus HOM05D004413 ORTHO05D005199 7.7e-59 232.3 294 46.3
BolC8t46964H Brassica oleracea HOM05D004413 ORTHO05D005199 7.7e-59 232.3 294 46.3
Ciclev10031642m.g Citrus clementina HOM05D004413 ORTHO05D005199 1.0e-58 231.9 289 44.6
PSO170G4481 Papaver somniferum HOM05D004413 ORTHO05D005199 1.7e-58 231.1 287 43.9
QL04p002426 Quercus lobata HOM05D004413 ORTHO05D005199 1.7e-58 231.1 322 41.6
Glyma.16G203400 Glycine max HOM05D004413 ORTHO05D005199 2.2e-58 230.7 280 46.1
AL1G14670 Arabidopsis lyrata HOM05D004413 ORTHO05D005199 2.9e-58 230.3 285 45.6
COL.COLO4_30064 Corchorus olitorius HOM05D004413 ORTHO05D005199 3.8e-58 229.9 288 45.8
Phvul.004G126300 Phaseolus vulgaris HOM05D004413 ORTHO05D005199 5.0e-58 229.6 280 44.3
Cc02_g27150 Coffea canephora HOM05D004413 ORTHO05D005199 6.5e-58 229.2 299 41.8
Nitab4.5_0001006g0010 Nicotiana tabacum HOM05D004413 ORTHO05D005199 6.5e-58 229.2 279 44.4
Aqoxy2G00074 Aquilegia oxysepala HOM05D004413 ORTHO05D005199 8.5e-58 228.8 283 45.6
AUR62016087 Chenopodium quinoa HOM05D004413 ORTHO05D005199 1.1e-57 228.4 290 41.0
CDE12G0144 Ceratophyllum demersum HOM05D004413 ORTHO05D005199 2.5e-57 227.3 283 43.5
arahy.Tifrunner.gnm1.ann1.MVM3BY Arachis hypogaea HOM05D004413 ORTHO05D005199 3.2e-57 226.9 309 43.0
vmacro21162 Vaccinium macrocarpon HOM05D004413 ORTHO05D005199 3.2e-57 226.9 312 42.3
arahy.Tifrunner.gnm1.ann1.0XNQ2B Arachis hypogaea HOM05D004413 ORTHO05D005199 5.5e-57 226.1 305 43.0
ATR0582G367 Amborella trichopoda HOM05D004413 ORTHO05D005199 7.2e-57 225.7 282 44.0
HPP92_005742 Vanilla planifolia HOM05D004413 ORTHO05D005199 7.2e-57 225.7 282 45.4
Dinv43918 Davidia involucrata HOM05D004413 ORTHO05D005199 9.4e-57 225.3 280 43.9
QL04p000397 Quercus lobata HOM05D004413 ORTHO05D005199 1.6e-56 224.6 350 38.6
CAN.G1393.6 Capsicum annuum HOM05D004413 ORTHO05D005199 2.7e-56 223.8 277 43.7
Duzib138G1189 Durio zibethinus HOM05D004413 ORTHO05D005199 2.7e-56 223.8 292 44.5
Sabra16G0135900 Salix brachista HOM05D004413 ORTHO05D005199 3.6e-56 223.4 301 42.5
Gorai.004G174800 Gossypium raimondii HOM05D004413 ORTHO05D005199 4.7e-56 223.0 284 44.0
Nitab4.5_0000346g0070 Nicotiana tabacum HOM05D004413 ORTHO05D005199 4.7e-56 223.0 280 43.9
Atru.chr1.1383 Acer truncatum HOM05D004413 ORTHO05D005199 8.0e-56 222.2 282 41.8
Lsat_1_v5_gn_4_46341 Lactuca sativa HOM05D004413 ORTHO05D005199 8.0e-56 222.2 280 43.2
Gohir.A08G146400 Gossypium hirsutum HOM05D004413 ORTHO05D005199 1.4e-55 221.5 289 44.3
Solyc01g074020.3 Solanum lycopersicum HOM05D004413 ORTHO05D005199 1.4e-55 221.5 278 44.6
Gohir.A01G019401 Gossypium hirsutum HOM05D004413 ORTHO05D005199 1.8e-55 221.1 284 44.7
Gohir.D08G167400 Gossypium hirsutum HOM05D004413 ORTHO05D005199 2.3e-55 220.7 284 44.0
Gohir.A08G005500 Gossypium hirsutum HOM05D004413 ORTHO05D005199 4.0e-55 219.9 284 44.4
CARHR004350 Cardamine hirsuta HOM05D004413 ORTHO05D005199 8.8e-55 218.8 284 45.4
PSO210G4410 Papaver somniferum HOM05D004413 ORTHO05D005199 8.8e-55 218.8 285 42.8
EL10Ac3g05776 Beta vulgaris HOM05D004413 ORTHO05D005199 1.2e-54 218.4 303 40.9
CsaV3_7G031400 Cucumis sativus L. HOM05D004413 ORTHO05D005199 1.5e-54 218.0 284 42.6
A06p04180 Brassica napus HOM05D004413 ORTHO05D005199 2.0e-54 217.6 287 44.6
Sed0007945 Sechium edule HOM05D004413 ORTHO05D005199 2.6e-54 217.2 282 42.2
BraA06t23623Z Brassica rapa HOM05D004413 ORTHO05D005199 3.4e-54 216.9 287 43.9
Ah.07g208370 Amaranthus hybridus HOM05D004413 ORTHO05D005199 4.4e-54 216.5 314 39.5
HanXRQChr16g0520481 Helianthus annuus HOM05D004413 ORTHO05D005199 2.2e-53 214.2 287 42.9
BcaC08g43081 Brassica carinata HOM05D004413 ORTHO05D005199 2.8e-53 213.8 246 46.3
Prupe.2G005000 Prunus persica HOM05D004413 ORTHO05D005199 3.7e-53 213.4 195 53.8
C06p03410 Brassica napus HOM05D004413 ORTHO05D005199 8.3e-53 212.2 246 46.3
BolC6t35480H Brassica oleracea HOM05D004413 ORTHO05D005199 8.3e-53 212.2 246 46.3
CiPaw.16G012500 Carya illinoinensis HOM05D004413 ORTHO05D005199 1.1e-52 211.8 262 46.2
Hund04656 Selenicereus undatus HOM05D004413 ORTHO05D005199 1.8e-52 211.1 285 42.1
ClCG09G003830 Citrullus lanatus HOM05D004413 ORTHO05D005199 5.4e-52 209.5 284 41.9
Zm00001eb140340 Zea mays HOM05D004413 ORTHO05D005199 2.0e-51 207.6 290 41.4
Sed0010518 Sechium edule HOM05D004413 ORTHO05D005199 4.5e-51 206.5 287 42.2
Os01g0962500 Oryza sativa ssp. japonica HOM05D004413 ORTHO05D005199 2.3e-50 204.1 291 42.3
Rhsim01G0132100 Rhododendron simsii HOM05D004413 ORTHO05D005199 2.9e-50 203.8 367 35.1
AagrBONN_evm.TU.Sc2ySwM_228.625 Anthoceros agrestis HOM05D004413 ORTHO05D005199 6.5e-50 202.6 287 45.6
SHI15877 Sapria himalayana HOM05D004413 ORTHO05D005199 6.5e-50 202.6 259 44.4
Hma1.2p1_0038F.1_g024150 Hydrangea macrophylla HOM05D004413 ORTHO05D005199 4.4e-46 189.9 284 39.8
CBR_g50781 Chara braunii HOM05D004413 ORTHO05D005199 8.3e-45 185.7 258 41.9
Lj9A624G21 Lonicera japonica HOM05D004413 ORTHO05D005199 1.2e-43 181.8 304 38.8
unitig_578.g16701 Utricularia gibba HOM05D004413 ORTHO05D005199 5.9e-43 179.5 269 39.8
Cre01.g049400 Chlamydomonas reinhardtii HOM05D004413 ORTHO05D005199 2.5e-41 174.1 282 36.5
MELO3C023518.2 Cucumis melo HOM05D004413 ORTHO05D005199 2.3e-39 167.5 284 37.0
SGA_v2.0_scaffold4G02237 Striga asiatica HOM05D004413 ORTHO05D005199 1.1e-33 148.7 190 41.1
PGSC0003DMG400006318 Solanum tuberosum HOM05D004413 ORTHO05D005199 4.9e-29 133.3 217 38.2
Actinidia21569 Actinidia chinensis HOM05D004413 ORTHO05D005199 1.1e-28 132.1 167 42.5
GSVIVG01027705001 Vitis vinifera HOM05D004413 ORTHO05D005199 9.2e-28 129.0 130 53.1
DCAR_015691 Daucus carota HOM05D004413 ORTHO05D005199 1.0e-26 125.6 126 47.6
Actinidia21570 Actinidia chinensis HOM05D004413 ORTHO05D005199 8.6e-26 122.5 77 67.5
ECA234G1090 Erigeron canadensis HOM05D004413 ORTHO05D005199 4.3e-25 120.2 222 36.0
Sopen01g033580 Solanum pennellii HOM05D004413 ORTHO05D005199 7.3e-25 119.4 139 43.9
Actinidia15863 Actinidia chinensis HOM05D004413 ORTHO05D005199 2.1e-24 117.9 77 67.5
GSVIVG01027710001 Vitis vinifera HOM05D004413 ORTHO05D005199 1.1e-23 115.5 77 67.5
A08p37250 Brassica napus HOM05D004413 ORTHO05D005199 4.0e-23 113.6 69 71.0
MCO07G333 Micromonas commoda HOM05D004413 ORTHO05D005199 5.2e-23 113.2 272 29.0
Sopen01g033590 Solanum pennellii HOM05D004413 ORTHO05D005199 6.8e-23 112.8 158 42.4
Dinv43485 Davidia involucrata HOM05D004413 ORTHO05D005199 9.9e-22 109.0 175 37.1
Gohir.A11G220500 Gossypium hirsutum HOM05D004413 ORTHO05D005199 2.9e-21 107.5 169 37.9
PSO170G2986 Papaver somniferum HOM05D004413 ORTHO05D005199 1.9e-20 104.8 169 36.1
Manes.10G149900 Manihot esculenta HOM05D000073 ORTHO05D000033 4.6e-19 100.1 76 57.9
PRCOL_00005718 Prasinoderma coloniale HOM05D004413 ORTHO05D005199 3.9e-18 97.1 313 26.8
HanXRQChr11g0328201 Helianthus annuus HOM05D004413 ORTHO05D005199 5.1e-18 96.7 62 67.7
Lj9A625T17 Lonicera japonica HOM05D004413 ORTHO05D005199 4.9e-13 80.1 221 30.8
GSVIVG01018194001 Vitis vinifera HOM05D004413 ORTHO05D005199 9.2e-12 75.9 67 47.8
GSVIVG01027698001 Vitis vinifera HOM05D004413 ORTHO05D005199 7.8e-11 72.8 65 44.6
Aa31LG1G19980 Aethionema arabicum HOM05D004413 ORTHO05D005199 2.5e-09 67.8 142 37.3
BraA09t42095Z Brassica rapa HOM05D004413 ORTHO05D005199 5.6e-09 66.6 105 39.0
Actinidia15864 Actinidia chinensis HOM05D004413 ORTHO05D005199 9.6e-09 65.9 54 55.6
GSVIVG01027696001 Vitis vinifera HOM05D004413 ORTHO05D005199 6.9e-07 59.7 43 51.2


User provided reference genes

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