Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SEGI_33948 Sequoiadendron giganteum HOM05D005117 ORTHO05D005956 1.9e-161 572.4 278 100.0
MSTRG.25503 Avicennia marina HOM05D005117 ORTHO05D005956 1.2e-11 74.7 53 71.7
PSO017G2614 Papaver somniferum HOM05D005117 ORTHO05D005956 3.6e-11 73.2 47 76.6
TAR381G0825 Trochodendron aralioides HOM05D005117 ORTHO05D005956 3.6e-11 73.2 45 80.0
PSO170G3068 Papaver somniferum HOM05D005117 ORTHO05D005956 6.2e-11 72.4 47 76.6
CsaV3_2G033280 Cucumis sativus L. HOM05D005117 ORTHO05D005956 1.1e-10 71.6 45 75.6
Os02g0557600 Oryza sativa ssp. japonica HOM05D005117 ORTHO05D005956 1.4e-10 71.2 66 60.6
Migut.C01395 Erythranthe guttata HOM05D005117 ORTHO05D005956 1.8e-10 70.9 53 66.0
Cpa.g.sc142.12 Carica papaya HOM05D005117 ORTHO05D005956 2.3e-10 70.5 45 73.3
ClCG11G008340 Citrullus lanatus HOM05D005117 ORTHO05D005956 3.1e-10 70.1 45 75.6
Gohir.A08G230500 Gossypium hirsutum HOM05D005117 ORTHO05D005956 3.1e-10 70.1 45 75.6
Gohir.D08G250900 Gossypium hirsutum HOM05D005117 ORTHO05D005956 3.1e-10 70.1 45 75.6
Gorai.004G267600 Gossypium raimondii HOM05D005117 ORTHO05D005956 3.1e-10 70.1 45 75.6
HPP92_019134 Vanilla planifolia HOM05D005117 ORTHO05D005956 3.1e-10 70.1 45 73.3
HPP92_019136 Vanilla planifolia HOM05D005117 ORTHO05D005956 3.1e-10 70.1 45 73.3
ATR1089G036 Amborella trichopoda HOM05D005117 ORTHO05D005956 4.0e-10 69.7 53 67.9
MBI06_g32153_MAGBIO Magnolia biondii HOM05D005117 ORTHO05D005956 4.0e-10 69.7 45 75.6
Actinidia23299 Actinidia chinensis HOM05D005117 ORTHO05D005956 5.2e-10 69.3 47 70.2
SalBow7G0613 Salvia bowleyana HOM05D005117 ORTHO05D005956 5.2e-10 69.3 53 62.3
Thecc.08G180900 Theobroma cacao HOM05D005117 ORTHO05D005956 5.2e-10 69.3 47 70.2
unitig_37.g13073 Utricularia gibba HOM05D005117 ORTHO05D005956 5.2e-10 69.3 45 75.6
Potri.013G096600 Populus trichocarpa HOM05D005117 ORTHO05D005956 8.9e-10 68.6 45 73.3
Sabra13G0082800 Salix brachista HOM05D005117 ORTHO05D005956 8.9e-10 68.6 45 73.3
EL10Ac1g01281 Beta vulgaris HOM05D005117 ORTHO05D005956 1.2e-09 68.2 47 66.0
Duzib093G1290 Durio zibethinus HOM05D005117 ORTHO05D005956 1.2e-09 68.2 54 57.4
Lsat_1_v5_gn_1_24520 Lactuca sativa HOM05D005117 ORTHO05D005956 1.2e-09 68.2 45 71.1
CiPaw.03G013100 Carya illinoinensis HOM05D005117 ORTHO05D005956 1.5e-09 67.8 45 71.1
Ciclev10019359m.g Citrus clementina HOM05D005117 ORTHO05D005956 1.5e-09 67.8 47 68.1
Medtr4g030200 Medicago truncatula HOM05D005117 ORTHO05D005956 1.5e-09 67.8 66 48.5
Psat7g227480 Pisum sativum HOM05D005117 ORTHO05D005956 1.5e-09 67.8 45 68.9
Cc10_g16050 Coffea canephora HOM05D005117 ORTHO05D005956 2.6e-09 67.0 53 62.3
COL.COLO4_25130 Corchorus olitorius HOM05D005117 ORTHO05D005956 2.6e-09 67.0 45 71.1
FAN27G2074 Fragaria x ananassa HOM05D005117 ORTHO05D005956 2.6e-09 67.0 54 59.3
Lj3g0005068 Lotus japonicus HOM05D005117 ORTHO05D005956 2.6e-09 67.0 66 50.0
Manes.18G111600 Manihot esculenta HOM05D005117 ORTHO05D005956 2.6e-09 67.0 45 73.3
QL09p001419 Quercus lobata HOM05D005117 ORTHO05D005956 2.6e-09 67.0 45 68.9
SGA_v2.0_scaffold443G51687 Striga asiatica HOM05D005117 ORTHO05D005956 2.6e-09 67.0 53 64.2
Zm00001eb243900 Zea mays HOM05D005117 ORTHO05D005956 3.4e-09 66.6 66 56.1
CSS0010464 Camellia sinensis var. sinensis HOM05D005117 ORTHO05D005956 4.4e-09 66.2 45 68.9
Rhsim12G0002100 Rhododendron simsii HOM05D005117 ORTHO05D005956 4.4e-09 66.2 47 72.3
RcHm_v2.0_Chr6g0250391 Rosa chinensis HOM05D005117 ORTHO05D005956 4.4e-09 66.2 54 59.3
TPR.G34118 Trifolium pratense HOM05D005117 ORTHO05D005956 4.4e-09 66.2 66 48.5
TWI12G0486 Tripterygium wilfordii HOM05D005117 ORTHO05D005956 4.4e-09 66.2 45 73.3
Ah.05g170440 Amaranthus hybridus HOM05D005117 ORTHO05D005956 5.8e-09 65.9 47 63.8
Ca_13614_v3 Cicer arietinum L. HOM05D005117 ORTHO05D005956 5.8e-09 65.9 45 66.7
Dinv22143 Davidia involucrata HOM05D005117 ORTHO05D005956 5.8e-09 65.9 45 71.1
Lalb_Chr03g0033811 Lupinus albus HOM05D005117 ORTHO05D005956 5.8e-09 65.9 47 63.8
CANSAT21G1171 Cannabis sativa HOM05D005117 ORTHO05D005956 7.5e-09 65.5 45 68.9
FvH4_2g00430 Fragaria vesca HOM05D005117 ORTHO05D005956 7.5e-09 65.5 54 57.4
FAN20G0498 Fragaria x ananassa HOM05D005117 ORTHO05D005956 7.5e-09 65.5 54 57.4
MD10G1002600 Malus domestica HOM05D005117 ORTHO05D005956 7.5e-09 65.5 45 66.7
Hund26940 Selenicereus undatus HOM05D005117 ORTHO05D005956 7.5e-09 65.5 45 66.7
THA.LOC104810302 Tarenaya hassleriana HOM05D005117 ORTHO05D005956 7.5e-09 65.5 54 57.4
Lj9A696G55 Lonicera japonica HOM05D005117 ORTHO05D005956 9.8e-09 65.1 45 68.9
Hma1.2p1_0016F.1_g010920 Hydrangea macrophylla HOM05D005117 ORTHO05D005956 1.3e-08 64.7 45 71.1
Sed0010084 Sechium edule HOM05D005117 ORTHO05D005956 1.3e-08 64.7 45 68.9
vmacro00948 Vaccinium macrocarpon HOM05D005117 ORTHO05D005956 1.3e-08 64.7 45 73.3
Nitab4.5_0000009g0430 Nicotiana tabacum HOM05D005117 ORTHO05D005956 1.7e-08 64.3 47 66.0
Peaxi162Scf00078g01021 Petunia axillaris HOM05D005117 ORTHO05D005956 1.7e-08 64.3 45 64.4
RcHm_v2.0_Chr6g0249791 Rosa chinensis HOM05D005117 ORTHO05D005956 1.7e-08 64.3 54 57.4
Aqoxy5G01861 Aquilegia oxysepala HOM05D005117 ORTHO05D005956 2.2e-08 63.9 47 68.1
Solyc11g045120.3 Solanum lycopersicum HOM05D005117 ORTHO05D005956 2.2e-08 63.9 45 73.3
Sopen11g020570 Solanum pennellii HOM05D005117 ORTHO05D005956 2.2e-08 63.9 45 73.3
vmacro00946 Vaccinium macrocarpon HOM05D005117 ORTHO05D005956 2.2e-08 63.9 45 73.3
ECA247G0677 Erigeron canadensis HOM05D005117 ORTHO05D005956 2.9e-08 63.5 45 64.4
arahy.Tifrunner.gnm1.ann1.H62643 Arachis hypogaea HOM05D005117 ORTHO05D005956 4.9e-08 62.8 45 62.2
arahy.Tifrunner.gnm1.ann1.T5KNPK Arachis hypogaea HOM05D005117 ORTHO05D005956 4.9e-08 62.8 45 62.2
PGSC0003DMG401019061 Solanum tuberosum HOM05D005117 ORTHO05D005956 4.9e-08 62.8 45 71.1
Atru.chr13.2569 Acer truncatum HOM05D005117 ORTHO05D005956 6.4e-08 62.4 45 62.2
CAN.G75.10 Capsicum annuum HOM05D005117 ORTHO05D005956 6.4e-08 62.4 80 46.2
CDE05G1166 Ceratophyllum demersum HOM05D005117 ORTHO05D005956 6.4e-08 62.4 42 64.3
Nitab4.5_0001489g0010 Nicotiana tabacum HOM05D005117 ORTHO05D005956 6.4e-08 62.4 45 64.4
PGR004G2811 Punica granatum HOM05D005117 ORTHO05D005956 6.4e-08 62.4 47 59.6
SMO364G0365 Selaginella moellendorffii HOM05D005117 ORTHO05D005956 8.3e-08 62.0 47 70.2
GSVIVG01037192001 Vitis vinifera HOM05D005117 ORTHO05D005956 8.3e-08 62.0 45 68.9
HanXRQChr12g0369271 Helianthus annuus HOM05D005117 ORTHO05D005956 1.4e-07 61.2 43 65.1
Haze_13981 Corylus avellana HOM05D005117 ORTHO05D005956 2.4e-07 60.5 45 64.4
Phvul.011G215800 Phaseolus vulgaris HOM05D005117 ORTHO05D005956 2.4e-07 60.5 45 62.2
Aa31LG4G9190 Aethionema arabicum HOM05D005117 ORTHO05D005956 3.2e-07 60.1 84 41.7
BcaB03g14892 Brassica carinata HOM05D005117 ORTHO05D005956 4.1e-07 59.7 45 64.4
Carub.0002s1821 Capsella rubella HOM05D005117 ORTHO05D005956 4.1e-07 59.7 54 55.6
VMungo1127G0019 Vigna mungo HOM05D005117 ORTHO05D005956 4.1e-07 59.7 45 62.2
CARHR064630 Cardamine hirsuta HOM05D005117 ORTHO05D005956 7.1e-07 58.9 54 57.4
AagrBONN_evm.TU.Sc2ySwM_340.40 Anthoceros agrestis HOM05D005117 ORTHO05D005956 9.2e-07 58.5 47 61.7
BraA07t31328Z Brassica rapa HOM05D005117 ORTHO05D005956 9.2e-07 58.5 45 62.2
AL2G31010 Arabidopsis lyrata HOM05D005117 ORTHO05D005956 1.2e-06 58.2 54 53.7
AT1G71350 Arabidopsis thaliana HOM05D005117 ORTHO05D005956 1.2e-06 58.2 54 53.7
BcaC08g46567 Brassica carinata HOM05D005117 ORTHO05D005956 2.1e-06 57.4 45 62.2
A07p37640 Brassica napus HOM05D005117 ORTHO05D005956 2.1e-06 57.4 45 62.2
C06p45410 Brassica napus HOM05D005117 ORTHO05D005956 2.1e-06 57.4 45 62.2
BolC6t39599H Brassica oleracea HOM05D005117 ORTHO05D005956 2.1e-06 57.4 45 62.2
SHI04055 Sapria himalayana HOM05D005117 ORTHO05D005956 2.7e-06 57.0 45 62.2
Sc06g0000080 Simmondsia chinensis HOM05D005117 ORTHO05D005956 2.7e-06 57.0 45 60.0
Thhalv10018306m.g Eutrema salsugineum HOM05D005117 ORTHO05D005956 4.6e-06 56.2 45 62.2
CBR_g6708 Chara braunii HOM05D005117 ORTHO05D005956 6.0e-06 55.8 45 60.0


User provided reference genes

Program Settings