Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SEGI_33601 Sequoiadendron giganteum HOM05D003539 ORTHO05D004111 0.0e+00 1302.0 662 100.0
Mapoly0144s0013 Marchantia polymorpha HOM05D003539 ORTHO05D004111 3.1e-162 576.2 708 46.5
ATR0605G358 Amborella trichopoda HOM05D003539 ORTHO05D004111 6.1e-158 562.0 565 52.7
SMO356G0429 Selaginella moellendorffii HOM05D003539 ORTHO05D004111 1.4e-157 560.8 636 49.1
Pp3c21_14490 Physcomitrium patens HOM05D003539 ORTHO05D004111 5.7e-156 555.4 605 50.2
Pp3c18_6750 Physcomitrium patens HOM05D003539 ORTHO05D004111 8.3e-155 551.6 716 44.7
Pp3c18_6751 Physcomitrium patens HOM05D003539 ORTHO05D004111 8.3e-155 551.6 716 44.7
Nn5g28137 Nelumbo nucifera HOM05D003539 ORTHO05D004111 1.3e-147 527.7 630 48.6
TAR381G1444 Trochodendron aralioides HOM05D003539 ORTHO05D004111 4.7e-142 509.2 626 47.6
Dinv40214 Davidia involucrata HOM05D003539 ORTHO05D004111 1.2e-137 494.6 630 46.3
Eucgr.J02557 Eucalyptus grandis HOM05D003539 ORTHO05D004111 5.9e-137 492.3 629 45.2
Gohir.D03G066500 Gossypium hirsutum HOM05D003539 ORTHO05D004111 4.3e-135 486.1 639 46.6
Gorai.003G064600 Gossypium raimondii HOM05D003539 ORTHO05D004111 1.6e-134 484.2 639 46.5
Atru.chr3.55 Acer truncatum HOM05D003539 ORTHO05D004111 1.0e-133 481.5 640 44.8
GSVIVG01026448001 Vitis vinifera HOM05D003539 ORTHO05D004111 4.0e-133 479.6 628 44.6
Dinv28297 Davidia involucrata HOM05D003539 ORTHO05D004111 1.2e-132 478.0 639 45.4
TWI79G1391 Tripterygium wilfordii HOM05D003539 ORTHO05D004111 1.5e-132 477.6 606 45.2
vmacro18474 Vaccinium macrocarpon HOM05D003539 ORTHO05D004111 1.5e-132 477.6 673 43.8
Glyma.09G196200 Glycine max HOM05D003539 ORTHO05D004111 4.4e-132 476.1 629 43.2
CSS0035723 Camellia sinensis var. sinensis HOM05D003539 ORTHO05D004111 7.5e-132 475.3 606 46.4
Hma1.2p1_0085F.1_g044410 Hydrangea macrophylla HOM05D003539 ORTHO05D004111 1.3e-131 474.6 607 45.8
Sc06g0005250 Simmondsia chinensis HOM05D003539 ORTHO05D004111 1.3e-131 474.6 629 44.5
Thecc.01G002200 Theobroma cacao HOM05D003539 ORTHO05D004111 1.7e-131 474.2 602 46.3
Manes.01G157300 Manihot esculenta HOM05D003539 ORTHO05D004111 6.4e-131 472.2 612 46.2
TAR376G1176 Trochodendron aralioides HOM05D003539 ORTHO05D004111 8.3e-131 471.9 602 46.8
Glyma.16G112800 Glycine max HOM05D003539 ORTHO05D004111 3.2e-130 469.9 631 43.3
Lalb_Chr09g0334501 Lupinus albus HOM05D003539 ORTHO05D004111 1.2e-129 468.0 628 44.6
AagrBONN_evm.TU.Sc2ySwM_368.2744 Anthoceros agrestis HOM05D003539 ORTHO05D004111 2.7e-129 466.8 532 48.9
Sed0003470 Sechium edule HOM05D003539 ORTHO05D004111 3.5e-129 466.5 632 42.2
HanXRQChr16g0510861 Helianthus annuus HOM05D003539 ORTHO05D004111 2.5e-127 460.3 547 46.1
PGR044G1248 Punica granatum HOM05D003539 ORTHO05D004111 3.3e-127 459.9 632 42.4
VMungo1309G1473 Vigna mungo HOM05D003539 ORTHO05D004111 3.3e-127 459.9 612 44.1
Potri.005G098500 Populus trichocarpa HOM05D003539 ORTHO05D004111 7.3e-127 458.8 613 43.9
PSO170G6051 Papaver somniferum HOM05D003539 ORTHO05D004111 1.2e-126 458.0 626 43.8
Lalb_Chr05g0229501 Lupinus albus HOM05D003539 ORTHO05D004111 1.6e-126 457.6 630 42.9
Phvul.010G020100 Phaseolus vulgaris HOM05D003539 ORTHO05D004111 1.1e-125 454.9 613 43.9
PSO017G0405 Papaver somniferum HOM05D003539 ORTHO05D004111 1.8e-125 454.1 633 42.5
ClCG02G000270 Citrullus lanatus HOM05D003539 ORTHO05D004111 3.1e-125 453.4 688 40.8
Oeu063413.2 Olea europaea HOM05D003539 ORTHO05D004111 1.2e-124 451.4 629 42.1
Oeu010807.1 Olea europaea HOM05D003539 ORTHO05D004111 3.4e-124 449.9 632 41.9
Lj2C504G7 Lonicera japonica HOM05D003539 ORTHO05D004111 9.8e-124 448.4 556 46.8
CANSAT35G0647 Cannabis sativa HOM05D003539 ORTHO05D004111 2.9e-123 446.8 639 42.7
MBI04_g31205_MAGBIO Magnolia biondii HOM05D003539 ORTHO05D004111 2.9e-123 446.8 629 43.7
Sabra05G0080900 Salix brachista HOM05D003539 ORTHO05D004111 3.7e-123 446.4 604 43.4
Lj4g0013403 Lotus japonicus HOM05D003539 ORTHO05D004111 6.4e-123 445.7 661 40.7
Cc07_g12170 Coffea canephora HOM05D003539 ORTHO05D004111 1.1e-122 444.9 635 43.0
Solyc02g082340.3 Solanum lycopersicum HOM05D003539 ORTHO05D004111 1.4e-122 444.5 638 42.2
Prupe.7G186400 Prunus persica HOM05D003539 ORTHO05D004111 4.1e-122 443.0 602 43.9
Sed0013779 Sechium edule HOM05D003539 ORTHO05D004111 5.4e-122 442.6 529 46.5
ECA233G1070 Erigeron canadensis HOM05D000002 ORTHO05D000001 9.2e-122 441.8 632 41.3
Lsat_1_v5_gn_5_30740 Lactuca sativa HOM05D003539 ORTHO05D004111 1.6e-121 441.0 632 41.8
MSTRG.20424 Avicennia marina HOM05D003539 ORTHO05D004111 3.5e-121 439.9 641 39.9
QL06p053198 Quercus lobata HOM05D003539 ORTHO05D004111 3.5e-121 439.9 632 43.4
Sopen02g027000 Solanum pennellii HOM05D003539 ORTHO05D004111 1.0e-120 438.3 638 41.7
Haze_03640 Corylus avellana HOM05D003539 ORTHO05D004111 2.3e-120 437.2 630 43.8
COL.COLO4_16224 Corchorus olitorius HOM05D003539 ORTHO05D004111 3.0e-120 436.8 610 44.4
CiPaw.15G173100 Carya illinoinensis HOM05D003539 ORTHO05D004111 3.9e-120 436.4 591 45.0
Nitab4.5_0000855g0080 Nicotiana tabacum HOM05D003539 ORTHO05D004111 3.9e-120 436.4 677 40.5
Manes.11G091200 Manihot esculenta HOM05D003539 ORTHO05D004111 5.1e-120 436.0 642 43.1
Nitab4.5_0000588g0180 Nicotiana tabacum HOM05D003539 ORTHO05D004111 5.1e-120 436.0 667 40.9
Aqoxy6G01535 Aquilegia oxysepala HOM05D003539 ORTHO05D004111 8.6e-120 435.3 681 38.9
Ca_21575_v3 Cicer arietinum L. HOM05D003539 ORTHO05D004111 1.1e-119 434.9 661 40.2
arahy.Tifrunner.gnm1.ann1.PPI4NM Arachis hypogaea HOM05D003539 ORTHO05D004111 1.9e-119 434.1 699 39.1
Cfa007110 Carpinus fangiana HOM05D003539 ORTHO05D004111 2.5e-119 433.7 631 43.4
CsaV3_3G008890 Cucumis sativus L. HOM05D003539 ORTHO05D004111 2.5e-119 433.7 566 43.8
Rhsim08G0026200 Rhododendron simsii HOM05D003539 ORTHO05D004111 4.3e-119 433.0 680 41.8
CAN.G1428.5 Capsicum annuum HOM05D003539 ORTHO05D004111 5.6e-119 432.6 666 41.4
Aqoxy3G00418 Aquilegia oxysepala HOM05D003539 ORTHO05D004111 7.3e-119 432.2 633 41.4
EL10Ac4g09711 Beta vulgaris HOM05D003539 ORTHO05D004111 2.8e-118 430.3 634 41.2
MD02G1108900 Malus domestica HOM05D003539 ORTHO05D004111 1.1e-117 428.3 613 42.3
arahy.Tifrunner.gnm1.ann1.4LH58N Arachis hypogaea HOM05D003539 ORTHO05D004111 5.2e-117 426.0 717 38.4
Migut.A00468 Erythranthe guttata HOM05D003539 ORTHO05D004111 1.5e-116 424.5 634 38.6
THA.LOC104814350 Tarenaya hassleriana HOM05D003539 ORTHO05D004111 2.6e-116 423.7 603 41.8
Carub.0004s1644 Capsella rubella HOM05D003539 ORTHO05D004111 4.4e-116 422.9 610 43.9
HanXRQChr09g0270331 Helianthus annuus HOM05D003539 ORTHO05D004111 4.4e-116 422.9 550 42.9
Nitab4.5_0003096g0020 Nicotiana tabacum HOM05D003539 ORTHO05D004111 4.4e-116 422.9 643 40.7
arahy.Tifrunner.gnm1.ann1.VZS2MK Arachis hypogaea HOM05D003539 ORTHO05D004111 5.8e-116 422.5 728 37.5
Aa31LG10G6570 Aethionema arabicum HOM05D003539 ORTHO05D004111 2.9e-115 420.2 632 40.8
SGA_v2.0_scaffold36G14401 Striga asiatica HOM05D003539 ORTHO05D004111 2.9e-115 420.2 636 39.3
MELO3C006107.2 Cucumis melo HOM05D003539 ORTHO05D004111 3.7e-115 419.9 564 42.0
arahy.Tifrunner.gnm1.ann1.UQ0JCX Arachis hypogaea HOM05D003539 ORTHO05D004111 8.3e-115 418.7 724 37.7
Aqoxy3G00897 Aquilegia oxysepala HOM05D003539 ORTHO05D004111 1.4e-114 417.9 619 41.8
SGA_v2.0_scaffold172G38971 Striga asiatica HOM05D003539 ORTHO05D004111 1.4e-114 417.9 691 37.9
Aa31LG6G11830 Aethionema arabicum HOM05D003539 ORTHO05D004111 3.2e-114 416.8 552 43.3
AL4G30740 Arabidopsis lyrata HOM05D003539 ORTHO05D004111 9.2e-114 415.2 633 41.7
Medtr4g117680 Medicago truncatula HOM05D003539 ORTHO05D004111 2.7e-113 413.7 598 40.8
Os06g0688100 Oryza sativa ssp. japonica HOM05D003539 ORTHO05D004111 2.7e-113 413.7 618 39.8
Hund21770 Selenicereus undatus HOM05D003539 ORTHO05D004111 3.5e-113 413.3 654 40.2
TPR.G29658 Trifolium pratense HOM05D003539 ORTHO05D004111 4.6e-113 412.9 613 40.5
AT2G34750 Arabidopsis thaliana HOM05D003539 ORTHO05D004111 2.3e-112 410.6 550 43.6
Sp4g17040 Schrenkiella parvula HOM05D003539 ORTHO05D004111 5.1e-112 409.5 602 41.0
Psat3g044960 Pisum sativum HOM05D003539 ORTHO05D004111 7.3e-111 405.6 619 39.9
CDE07G0217 Ceratophyllum demersum HOM05D003539 ORTHO05D004111 9.6e-111 405.2 568 42.4
Actinidia28753 Actinidia chinensis HOM05D003539 ORTHO05D004111 1.2e-110 404.8 636 40.3
Thhalv10016395m.g Eutrema salsugineum HOM05D003539 ORTHO05D004111 1.2e-110 404.8 616 41.1
ClCG05G001500 Citrullus lanatus HOM05D003539 ORTHO05D004111 2.8e-110 403.7 651 38.6
arahy.Tifrunner.gnm1.ann1.JIK3X3 Arachis hypogaea HOM05D003539 ORTHO05D004111 4.0e-109 399.8 702 37.3
Thhalv10007103m.g Eutrema salsugineum HOM05D003539 ORTHO05D004111 6.8e-109 399.1 627 39.9
Peaxi162Scf00677g00114 Petunia axillaris HOM05D003539 ORTHO05D004111 2.0e-108 397.5 632 39.7
Sc09g0001980 Simmondsia chinensis HOM05D003539 ORTHO05D004111 3.4e-108 396.7 540 43.7
BcaB06g28796 Brassica carinata HOM05D003539 ORTHO05D004111 7.6e-108 395.6 606 39.9
Ah.06g188300 Amaranthus hybridus HOM05D003539 ORTHO05D004111 1.3e-107 394.8 639 39.3
CARHR128910 Cardamine hirsuta HOM05D003539 ORTHO05D004111 2.2e-107 394.0 548 43.1
AL1G44630 Arabidopsis lyrata HOM05D003539 ORTHO05D004111 2.9e-107 393.7 638 39.7
BolC3t14644H Brassica oleracea HOM05D003539 ORTHO05D004111 2.7e-105 387.1 608 40.5
Psat7g042440 Pisum sativum HOM05D003539 ORTHO05D004111 4.6e-105 386.3 649 38.2
Carub.0001s2885 Capsella rubella HOM05D003539 ORTHO05D004111 1.7e-104 384.4 635 39.5
C03p22480 Brassica napus HOM05D003539 ORTHO05D004111 2.3e-104 384.0 608 40.1
Hund28202 Selenicereus undatus HOM05D003539 ORTHO05D004111 3.0e-104 383.6 655 38.6
Hund28214 Selenicereus undatus HOM05D003539 ORTHO05D004111 3.0e-104 383.6 655 38.6
A03p19290 Brassica napus HOM05D003539 ORTHO05D004111 1.9e-103 380.9 612 40.4
BraA03t11183Z Brassica rapa HOM05D003539 ORTHO05D004111 3.3e-103 380.2 612 40.2
Duzib147G0916 Durio zibethinus HOM05D003539 ORTHO05D004111 5.6e-103 379.4 642 40.7
A04p26550 Brassica napus HOM05D003539 ORTHO05D004111 1.6e-102 377.9 556 41.0
BraA04t18159Z Brassica rapa HOM05D003539 ORTHO05D004111 1.6e-102 377.9 574 39.5
RcHm_v2.0_Chr2g0096801 Rosa chinensis HOM05D003539 ORTHO05D004111 6.2e-102 375.9 615 38.2
Haze_00123 Corylus avellana HOM05D003539 ORTHO05D004111 8.1e-102 375.6 512 45.9
unitig_699.g19839 Utricularia gibba HOM05D003539 ORTHO05D004111 5.3e-101 372.9 603 37.8
Cfa016374 Carpinus fangiana HOM05D003539 ORTHO05D004111 6.9e-101 372.5 522 42.5
Gohir.A02G120000 Gossypium hirsutum HOM05D003539 ORTHO05D004111 5.8e-100 369.4 459 48.1
FAN28G2151 Fragaria x ananassa HOM05D003539 ORTHO05D004111 7.6e-100 369.0 611 38.0
THA.LOC104798595 Tarenaya hassleriana HOM05D003539 ORTHO05D004111 7.6e-100 369.0 574 39.2
AUR62006940 Chenopodium quinoa HOM05D003539 ORTHO05D004111 2.2e-99 367.5 635 38.3
FvH4_1g10010 Fragaria vesca HOM05D003539 ORTHO05D004111 2.2e-99 367.5 611 37.8
FAN26G1725 Fragaria x ananassa HOM05D003539 ORTHO05D004111 7.1e-98 362.5 611 37.5
FAN19G1026 Fragaria x ananassa HOM05D003539 ORTHO05D004111 6.0e-97 359.4 649 36.2
AT1G30590 Arabidopsis thaliana HOM05D003539 ORTHO05D004111 3.0e-96 357.1 633 38.9
Peaxi162Scf00344g01722 Petunia axillaris HOM05D003539 ORTHO05D004111 5.1e-96 356.3 625 37.3
FAN23G2523 Fragaria x ananassa HOM05D003539 ORTHO05D004111 3.3e-95 353.6 630 36.3
Zm00001eb226160 Zea mays HOM05D003539 ORTHO05D004111 2.8e-94 350.5 621 36.7
Peaxi162Scf00015g00939 Petunia axillaris HOM05D003539 ORTHO05D004111 1.8e-93 347.8 642 38.0
BolC4t22991H Brassica oleracea HOM05D003539 ORTHO05D004111 7.6e-92 342.4 568 40.1
AL4G35010 Arabidopsis lyrata HOM05D003539 ORTHO05D004111 4.9e-91 339.7 618 37.2
C04p14010 Brassica napus HOM05D003539 ORTHO05D004111 3.2e-90 337.0 568 40.1
AUR62000583 Chenopodium quinoa HOM05D003539 ORTHO05D004111 7.1e-90 335.9 631 36.8
BraA05t20035Z Brassica rapa HOM05D003539 ORTHO05D004111 1.8e-88 331.3 615 37.9
BcaC06g35972 Brassica carinata HOM05D003539 ORTHO05D004111 1.2e-84 318.5 630 35.1
C07p01640 Brassica napus HOM05D003539 ORTHO05D004111 2.6e-84 317.4 627 35.6
Carub.0004s2129 Capsella rubella HOM05D003539 ORTHO05D004111 2.6e-84 317.4 635 35.7
AT2G39240 Arabidopsis thaliana HOM05D003539 ORTHO05D004111 3.3e-79 300.4 643 33.9
BcaC02g11551 Brassica carinata HOM05D003539 ORTHO05D004111 6.2e-78 296.2 583 36.7
BcaC01g05764 Brassica carinata HOM05D003539 ORTHO05D004111 1.1e-66 258.8 401 39.4
C07p01430 Brassica napus HOM05D003539 ORTHO05D004111 2.7e-65 254.2 453 38.2
AL4G36550 Arabidopsis lyrata HOM05D003539 ORTHO05D004111 5.1e-64 250.0 599 32.4
C04p63970 Brassica napus HOM05D003539 ORTHO05D004111 5.1e-64 250.0 452 37.8
Actinidia20762 Actinidia chinensis HOM05D003539 ORTHO05D004111 1.5e-63 248.4 304 48.4
HPP92_018392 Vanilla planifolia HOM05D003539 ORTHO05D004111 3.3e-63 247.3 458 36.0
SalBow7G2073 Salvia bowleyana HOM05D003539 ORTHO05D004111 1.7e-59 235.0 356 39.9
Cre03.g207950 Chlamydomonas reinhardtii HOM05D003539 ORTHO05D004111 5.1e-56 223.4 608 28.5
Actinidia02872 Actinidia chinensis HOM05D003539 ORTHO05D004111 2.4e-53 214.5 315 42.9
Actinidia20763 Actinidia chinensis HOM05D003539 ORTHO05D004111 1.2e-52 212.2 366 38.5
DCAR_007550 Daucus carota HOM05D003539 ORTHO05D004111 5.9e-52 209.9 267 45.3
CBR_g23271 Chara braunii HOM05D003539 ORTHO05D004111 2.3e-48 198.0 373 34.6
SalBow7G0297 Salvia bowleyana HOM05D003539 ORTHO05D004111 4.0e-48 197.2 266 40.6
PRCOL_00004831 Prasinoderma coloniale HOM05D003539 ORTHO05D004111 1.4e-45 188.7 548 27.2
FAN23G0637 Fragaria x ananassa HOM05D003539 ORTHO05D004111 5.3e-45 186.8 365 34.5
BolC4t27866H Brassica oleracea HOM05D003539 ORTHO05D004111 7.2e-42 176.4 180 51.1
Oeu000297.1 Olea europaea HOM05D003539 ORTHO05D004111 2.7e-41 174.5 247 39.7
BcaC06g35980 Brassica carinata HOM05D003539 ORTHO05D004111 3.6e-41 174.1 281 40.9
SHI13961 Sapria himalayana HOM05D003539 ORTHO05D004111 8.0e-41 172.9 347 35.7
CBR_g23267 Chara braunii HOM05D000019 ORTHO05D000048 2.2e-38 164.9 188 45.7
MCO15G598 Micromonas commoda HOM05D003539 ORTHO05D004111 1.9e-34 151.8 625 26.4
Cfa022324 Carpinus fangiana HOM05D003539 ORTHO05D004111 5.2e-32 143.7 571 24.2
BcaB05g23816 Brassica carinata HOM05D003539 ORTHO05D004111 1.2e-31 142.5 337 30.0
GSVIVG01026439001 Vitis vinifera HOM05D003539 ORTHO05D004111 1.4e-29 135.6 184 40.8
Ciclev10010838m.g Citrus clementina HOM05D003539 ORTHO05D004111 1.7e-27 128.6 210 39.5
PSO782G3432 Papaver somniferum HOM05D003539 ORTHO05D004111 1.7e-27 128.6 314 31.8
DCAR_007549 Daucus carota HOM05D003539 ORTHO05D004111 6.6e-27 126.7 186 40.3
Gohir.A02G119802 Gossypium hirsutum HOM05D003539 ORTHO05D004111 5.7e-23 113.6 165 41.8
arahy.Tifrunner.gnm1.ann1.PJLZ8M Arachis hypogaea HOM05D003539 ORTHO05D004111 1.7e-22 112.1 154 42.2
BcaC06g35981 Brassica carinata HOM05D003539 ORTHO05D004111 6.8e-16 90.1 217 28.6
RcHm_v2.0_Chr2g0096841 Rosa chinensis HOM05D003539 ORTHO05D004111 1.2e-15 89.4 212 32.5
EL10Ac6g14558 Beta vulgaris HOM05D003539 ORTHO05D004111 6.4e-14 83.6 179 34.1
Cfa022001 Carpinus fangiana HOM05D003539 ORTHO05D004111 4.1e-13 80.9 128 42.2
Cpa.g.sc7.213 Carica papaya HOM05D003539 ORTHO05D004111 7.0e-13 80.1 78 46.2
HanXRQChr05g0145981 Helianthus annuus HOM05D003539 ORTHO05D004111 1.7e-11 75.5 156 34.0
Medtr8g085920 Medicago truncatula HOM05D003539 ORTHO05D004111 5.6e-10 70.5 81 45.7
Cpa.g.sc7.212 Carica papaya HOM05D003539 ORTHO05D004111 9.5e-10 69.7 73 54.8
C03p59690 Brassica napus HOM05D003539 ORTHO05D004111 1.2e-09 69.3 74 51.4
BolC3t18231H Brassica oleracea HOM05D003539 ORTHO05D004111 1.2e-09 69.3 74 51.4
Psat0s4462g0080 Pisum sativum HOM05D003539 ORTHO05D004111 6.4e-06 57.0 74 39.2


User provided reference genes

Program Settings