Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SEGI_32476 Sequoiadendron giganteum HOM05D004214 ORTHO05D004963 1.1e-139 500.0 255 100.0
TAR629G3302 Trochodendron aralioides HOM05D004214 ORTHO05D004963 1.9e-62 243.4 192 59.9
Oeu010226.1 Olea europaea HOM05D004214 ORTHO05D004963 1.3e-60 237.3 217 53.9
Oeu010227.1 Olea europaea HOM05D004214 ORTHO05D004963 1.3e-60 237.3 217 53.9
Actinidia06102 Actinidia chinensis HOM05D004214 ORTHO05D004963 1.5e-59 233.8 209 54.1
MSTRG.23916 Avicennia marina HOM05D004214 ORTHO05D004963 3.3e-59 232.6 204 52.5
Migut.H00677 Erythranthe guttata HOM05D004214 ORTHO05D004963 3.3e-59 232.6 202 55.0
Cpa.g.sc14.113 Carica papaya HOM05D004214 ORTHO05D004963 2.1e-58 229.9 209 51.2
CSS0015906 Camellia sinensis var. sinensis HOM05D004214 ORTHO05D004963 3.6e-58 229.2 198 53.0
CSS0019671 Camellia sinensis var. sinensis HOM05D004214 ORTHO05D004963 3.6e-58 229.2 198 53.0
Sc10g0003430 Simmondsia chinensis HOM05D004214 ORTHO05D004963 3.6e-58 229.2 242 48.8
GSVIVG01011460001 Vitis vinifera HOM05D004214 ORTHO05D004963 3.6e-58 229.2 203 54.2
Dinv11505 Davidia involucrata HOM05D004214 ORTHO05D004963 1.1e-57 227.6 198 55.1
TWI60G1366 Tripterygium wilfordii HOM05D004214 ORTHO05D004963 1.4e-57 227.3 206 52.9
Eucgr.I02016 Eucalyptus grandis HOM05D004214 ORTHO05D004963 2.3e-57 226.5 196 54.6
Atru.chr8.322 Acer truncatum HOM05D004214 ORTHO05D004963 1.2e-56 224.2 208 53.8
Manes.02G048700 Manihot esculenta HOM05D004214 ORTHO05D004963 1.2e-56 224.2 195 52.8
CSS0036969 Camellia sinensis var. sinensis HOM05D004214 ORTHO05D004963 1.5e-56 223.8 202 54.0
BraA04t16893Z Brassica rapa HOM05D004214 ORTHO05D004963 2.6e-56 223.0 214 48.6
PGSC0003DMG400025136 Solanum tuberosum HOM05D004214 ORTHO05D004963 3.4e-56 222.6 202 54.0
C04p45970 Brassica napus HOM05D004214 ORTHO05D004963 5.8e-56 221.9 214 48.1
BolC4t26180H Brassica oleracea HOM05D004214 ORTHO05D004963 5.8e-56 221.9 214 48.1
Sp7g02430 Schrenkiella parvula HOM05D004214 ORTHO05D004963 5.8e-56 221.9 190 52.6
A04p12290 Brassica napus HOM05D004214 ORTHO05D004963 7.5e-56 221.5 214 48.6
CARHR262760 Cardamine hirsuta HOM05D004214 ORTHO05D004963 9.8e-56 221.1 214 47.2
SalBow1G5883 Salvia bowleyana HOM05D004214 ORTHO05D004963 1.3e-55 220.7 218 49.1
ATR0564G445 Amborella trichopoda HOM05D004214 ORTHO05D004963 1.7e-55 220.3 205 51.7
Thhalv10027904m.g Eutrema salsugineum HOM05D004214 ORTHO05D004963 1.7e-55 220.3 190 52.1
Potri.017G087500 Populus trichocarpa HOM05D004214 ORTHO05D004963 1.7e-55 220.3 217 50.2
BcaB06g27341 Brassica carinata HOM05D004214 ORTHO05D004963 4.9e-55 218.8 214 47.7
Carub.0007s3642 Capsella rubella HOM05D004214 ORTHO05D004963 4.9e-55 218.8 207 49.3
Hma1.2p1_0409F.1_g146710 Hydrangea macrophylla HOM05D004214 ORTHO05D004963 6.4e-55 218.4 205 52.7
HanXRQChr15g0487741 Helianthus annuus HOM05D004214 ORTHO05D004963 8.3e-55 218.0 231 45.9
Lsat_1_v5_gn_4_169740 Lactuca sativa HOM05D004214 ORTHO05D004963 8.3e-55 218.0 207 49.8
AL7G50770 Arabidopsis lyrata HOM05D004214 ORTHO05D004963 1.1e-54 217.6 235 45.1
Sopen02g016310 Solanum pennellii HOM05D004214 ORTHO05D004963 1.9e-54 216.9 190 54.2
EL10Ac2g03019 Beta vulgaris HOM05D004214 ORTHO05D004963 2.4e-54 216.5 221 48.0
Solyc02g067120.4 Solanum lycopersicum HOM05D004214 ORTHO05D004963 2.4e-54 216.5 190 54.2
TWI34G0797 Tripterygium wilfordii HOM05D004214 ORTHO05D004963 3.2e-54 216.1 194 52.6
TWI34G1333 Tripterygium wilfordii HOM05D004214 ORTHO05D004963 3.2e-54 216.1 194 52.6
Ciclev10012515m.g Citrus clementina HOM05D004214 ORTHO05D004963 4.1e-54 215.7 256 44.9
Cc07_g03630 Coffea canephora HOM05D004214 ORTHO05D004963 1.2e-53 214.2 200 49.0
THA.LOC104805483 Tarenaya hassleriana HOM05D004214 ORTHO05D004963 1.2e-53 214.2 215 49.3
Rhsim10G0035800 Rhododendron simsii HOM05D004214 ORTHO05D004963 1.6e-53 213.8 192 54.7
ECA232G2753 Erigeron canadensis HOM05D004214 ORTHO05D005214 2.1e-53 213.4 195 50.8
CDE02G0918 Ceratophyllum demersum HOM05D004214 ORTHO05D004963 6.0e-53 211.8 205 50.2
Nitab4.5_0010283g0010 Nicotiana tabacum HOM05D004214 ORTHO05D004963 3.9e-52 209.1 192 55.2
Sp7g02440 Schrenkiella parvula HOM05D004214 ORTHO05D004963 8.6e-52 208.0 189 49.7
Rhsim10G0035900 Rhododendron simsii HOM05D004214 ORTHO05D004963 2.5e-51 206.5 246 45.1
AUR62018111 Chenopodium quinoa HOM05D004214 ORTHO05D004963 3.3e-51 206.1 190 49.5
Gorai.001G240700 Gossypium raimondii HOM05D004214 ORTHO05D004963 5.6e-51 205.3 224 42.0
Thhalv10028063m.g Eutrema salsugineum HOM05D004214 ORTHO05D004963 9.5e-51 204.5 229 45.9
unitig_62.g23442 Utricularia gibba HOM05D004214 ORTHO05D004963 1.2e-50 204.1 238 40.8
BcaB06g27340 Brassica carinata HOM05D004214 ORTHO05D004963 2.8e-50 203.0 206 48.1
Lj3A346G23 Lonicera japonica HOM05D004214 ORTHO05D004963 2.8e-50 203.0 192 49.0
Duzib147G0992 Durio zibethinus HOM05D004214 ORTHO05D004963 6.2e-50 201.8 233 42.5
Mapoly0033s0115 Marchantia polymorpha HOM05D004214 ORTHO05D004963 8.1e-50 201.4 197 47.2
CARHR262810 Cardamine hirsuta HOM05D004214 ORTHO05D004963 1.4e-49 200.7 189 48.7
DCAR_011079 Daucus carota HOM05D004214 ORTHO05D004963 1.4e-49 200.7 188 49.5
AL7G50790 Arabidopsis lyrata HOM05D004214 ORTHO05D004963 1.8e-49 200.3 185 49.2
BraA04t16892Z Brassica rapa HOM05D004214 ORTHO05D004963 2.3e-49 199.9 189 48.7
C04p45960 Brassica napus HOM05D004214 ORTHO05D004963 3.1e-49 199.5 189 48.7
BolC4t26179H Brassica oleracea HOM05D004214 ORTHO05D004963 3.1e-49 199.5 189 48.7
A04p12270 Brassica napus HOM05D004214 ORTHO05D004963 5.2e-49 198.7 204 45.6
Hund15587 Selenicereus undatus HOM05D004214 ORTHO05D004963 5.2e-49 198.7 252 42.5
BcaB06g27320 Brassica carinata HOM05D004214 ORTHO05D004963 6.8e-49 198.4 189 48.1
BraA04t16891Z Brassica rapa HOM05D004214 ORTHO05D004963 6.8e-49 198.4 200 46.5
CAN.G979.5 Capsicum annuum HOM05D004214 ORTHO05D004963 1.5e-48 197.2 167 54.5
Thecc.04G087300 Theobroma cacao HOM05D004214 ORTHO05D004963 2.6e-48 196.4 218 43.1
A04p12280 Brassica napus HOM05D004214 ORTHO05D004963 3.4e-48 196.1 189 48.1
Carub.0007s3643 Capsella rubella HOM05D004214 ORTHO05D004963 3.4e-48 196.1 185 48.1
AT5G39530 Arabidopsis thaliana HOM05D004214 ORTHO05D004963 4.4e-48 195.7 208 45.7
PSO478G0939 Papaver somniferum HOM05D004214 ORTHO05D004963 7.6e-48 194.9 190 47.4
AT5G39520 Arabidopsis thaliana HOM05D004214 ORTHO05D004963 9.9e-48 194.5 195 45.6
PSO017G4463 Papaver somniferum HOM05D004214 ORTHO05D004963 2.9e-47 193.0 190 47.4
COL.COLO4_12225 Corchorus olitorius HOM05D004214 ORTHO05D004963 6.4e-47 191.8 172 47.7
CARHR262800 Cardamine hirsuta HOM05D004214 ORTHO05D004963 2.4e-46 189.9 175 48.6
AUR62034445 Chenopodium quinoa HOM05D004214 ORTHO05D004963 6.0e-45 185.3 161 50.9
SGA_v2.0_scaffold413G51175 Striga asiatica HOM05D004214 ORTHO05D004963 3.9e-44 182.6 198 49.0
Peaxi162Scf00629g00121 Petunia axillaris HOM05D004214 ORTHO05D004963 6.2e-42 175.3 207 47.8
QL02p084825 Quercus lobata HOM05D004214 ORTHO05D004963 1.8e-41 173.7 192 42.7
Nn4g23269 Nelumbo nucifera HOM05D004214 ORTHO05D004963 2.4e-41 173.3 157 51.6
Nitab4.5_0000568g0170 Nicotiana tabacum HOM05D004214 ORTHO05D004963 8.9e-41 171.4 200 41.5
CAN.G206.176 Capsicum annuum HOM05D004214 ORTHO05D004963 2.2e-39 166.8 229 38.4
PGR004G0346 Punica granatum HOM05D004214 ORTHO05D004963 2.2e-39 166.8 161 51.6
QL02p084872 Quercus lobata HOM05D004214 ORTHO05D004963 1.1e-38 164.5 196 38.8
arahy.Tifrunner.gnm1.ann1.55PBKN Arachis hypogaea HOM05D004214 ORTHO05D004963 1.4e-38 164.1 239 36.8
arahy.Tifrunner.gnm1.ann1.7SZ544 Arachis hypogaea HOM05D004214 ORTHO05D004963 2.4e-38 163.3 239 36.8
Lj2g0002943 Lotus japonicus HOM05D004214 ORTHO05D004963 3.2e-38 162.9 204 39.7
Ca_04853_v3 Cicer arietinum L. HOM05D004214 ORTHO05D004963 4.2e-38 162.5 203 38.4
BcaB06g27319 Brassica carinata HOM05D004214 ORTHO05D004963 2.1e-37 160.2 204 40.7
Gohir.D07G212700 Gossypium hirsutum HOM05D004214 ORTHO05D004963 2.7e-37 159.8 166 42.8
PGSC0003DMG401001341 Solanum tuberosum HOM05D004214 ORTHO05D004963 7.8e-37 158.3 198 40.4
PGSC0003DMG402001341 Solanum tuberosum HOM05D004214 ORTHO05D004963 7.8e-37 158.3 201 40.8
Medtr6g012830 Medicago truncatula HOM05D004214 ORTHO05D004963 2.3e-36 156.8 211 36.0
CBR_g51334 Chara braunii HOM05D004214 ORTHO05D004963 3.0e-36 156.4 174 44.3
Lj3A369T15 Lonicera japonica HOM05D004214 ORTHO05D004963 5.1e-36 155.6 146 48.6
Lj2g0016815 Lotus japonicus HOM05D004214 ORTHO05D004963 6.6e-36 155.2 240 35.8
Lalb_Chr06g0175181 Lupinus albus HOM05D004214 ORTHO05D004963 6.6e-36 155.2 194 37.1
Os03g0168300 Oryza sativa ssp. japonica HOM05D004214 ORTHO05D004963 6.6e-36 155.2 190 41.1
Lj3A367T10 Lonicera japonica HOM05D004214 ORTHO05D004963 8.7e-36 154.8 199 40.2
TPR.G14395 Trifolium pratense HOM05D004214 ORTHO05D004963 8.7e-36 154.8 199 37.2
Lj8A428G27 Lonicera japonica HOM05D004214 ORTHO05D004963 1.1e-35 154.5 199 40.7
Nitab4.5_0000212g0090 Nicotiana tabacum HOM05D004214 ORTHO05D004963 1.1e-35 154.5 192 45.8
Solyc02g088270.3 Solanum lycopersicum HOM05D004214 ORTHO05D004963 1.1e-35 154.5 191 40.3
Zm00001eb402430 Zea mays HOM05D004214 ORTHO05D004963 1.5e-35 154.1 191 38.2
Sopen02g032950 Solanum pennellii HOM05D004214 ORTHO05D004963 3.3e-35 152.9 190 41.1
Peaxi162Scf00166g01050 Petunia axillaris HOM05D004214 ORTHO05D004963 5.6e-35 152.1 196 40.8
Phvul.004G031400 Phaseolus vulgaris HOM05D004214 ORTHO05D004963 5.6e-35 152.1 202 38.1
Psat1g070480 Pisum sativum HOM05D004214 ORTHO05D004963 9.6e-35 151.4 174 40.8
Lj8A426T27 Lonicera japonica HOM05D004214 ORTHO05D004963 2.1e-34 150.2 146 47.3
TPR.G26214 Trifolium pratense HOM05D004214 ORTHO05D004963 6.2e-34 148.7 210 34.8
Glyma.13G060852 Glycine max HOM05D004214 ORTHO05D004963 1.1e-33 147.9 201 37.8
VMungo0464G0566 Vigna mungo HOM05D004214 ORTHO05D004963 6.9e-33 145.2 202 37.1
Zm00001eb328430 Zea mays HOM05D004214 ORTHO05D004963 6.9e-33 145.2 165 44.2
Lj4P113T24 Lonicera japonica HOM05D004214 ORTHO05D004963 9.0e-33 144.8 140 49.3
MD09G1055000 Malus domestica HOM05D004214 ORTHO05D004963 2.0e-32 143.7 214 34.1
Prupe.3G263500 Prunus persica HOM05D004214 ORTHO05D004963 2.0e-32 143.7 212 35.8
ClCG09G017980 Citrullus lanatus HOM05D004214 ORTHO05D004963 7.6e-32 141.7 186 39.2
Lj3A352G14 Lonicera japonica HOM05D004214 ORTHO05D004963 1.7e-31 140.6 140 46.4
Os07g0633000 Oryza sativa ssp. japonica HOM05D004214 ORTHO05D004963 1.1e-30 137.9 169 42.6
Glyma.19G025600 Glycine max HOM05D004214 ORTHO05D004963 4.2e-30 136.0 195 36.9
CsaV3_5G038250 Cucumis sativus L. HOM05D004214 ORTHO05D004963 5.4e-30 135.6 187 36.4
QL02p084854 Quercus lobata HOM05D004214 ORTHO05D004963 9.3e-30 134.8 198 34.3
FAN05G5298 Fragaria x ananassa HOM05D004214 ORTHO05D004963 2.7e-29 133.3 217 34.6
Lj2g0001860 Lotus japonicus HOM05D004214 ORTHO05D004963 2.7e-29 133.3 153 41.2
Psat1g071840 Pisum sativum HOM05D004214 ORTHO05D004963 6.0e-29 132.1 195 35.9
MELO3C033594.2 Cucumis melo HOM05D004214 ORTHO05D004963 1.3e-28 131.0 185 35.1
PGR083G1063 Punica granatum HOM05D004214 ORTHO05D004963 3.0e-28 129.8 191 36.6
C04p45950 Brassica napus HOM05D004214 ORTHO05D004963 3.3e-27 126.3 204 33.8
Lj2g0019349 Lotus japonicus HOM05D004214 ORTHO05D004963 9.6e-27 124.8 206 32.0
FvH4_6g48001 Fragaria vesca HOM05D004214 ORTHO05D004963 2.1e-26 123.6 208 32.7
RcHm_v2.0_Chr2g0167251 Rosa chinensis HOM05D004214 ORTHO05D004963 3.6e-26 122.9 166 39.2
FvH4_6g48000 Fragaria vesca HOM05D004214 ORTHO05D004963 6.2e-26 122.1 217 33.2
FAN14G4990 Fragaria x ananassa HOM05D004214 ORTHO05D004963 1.4e-25 120.9 234 32.1
RcHm_v2.0_Chr2g0167291 Rosa chinensis HOM05D004214 ORTHO05D004963 3.1e-25 119.8 202 35.6
FAN14G3700 Fragaria x ananassa HOM05D004214 ORTHO05D004963 5.3e-25 119.0 197 32.0
Ca_04848_v3 Cicer arietinum L. HOM05D004214 ORTHO05D004963 9.0e-25 118.2 195 32.3
FAN09G1794 Fragaria x ananassa HOM05D004214 ORTHO05D004963 1.5e-24 117.5 210 31.9
RcHm_v2.0_Chr2g0167241 Rosa chinensis HOM05D004214 ORTHO05D004963 4.5e-24 115.9 204 34.8
TPR.G8805 Trifolium pratense HOM05D004214 ORTHO05D004963 7.6e-24 115.2 203 32.5
Gohir.A07G206700 Gossypium hirsutum HOM05D004214 ORTHO05D004963 3.2e-22 109.8 119 40.3
Phvul.004G029700 Phaseolus vulgaris HOM05D004214 ORTHO05D004963 7.1e-22 108.6 239 29.7
BolC4t26178H Brassica oleracea HOM05D004214 ORTHO05D004963 1.1e-19 101.3 92 51.1
Nitab4.5_0001591g0160 Nicotiana tabacum HOM05D004214 ORTHO05D004963 1.5e-19 100.9 235 27.2
FAN02G2928 Fragaria x ananassa HOM05D004214 ORTHO05D004963 1.3e-18 97.8 179 34.1
PRCOL_00004285 Prasinoderma coloniale HOM05D004214 ORTHO05D004963 1.6e-18 97.4 177 31.6
arahy.Tifrunner.gnm1.ann1.SU00NT Arachis hypogaea HOM05D004214 ORTHO05D004963 1.1e-17 94.7 197 28.4
ClCG10G015310 Citrullus lanatus HOM05D004214 ORTHO05D004963 1.1e-17 94.7 192 31.8
CBR_g46605 Chara braunii HOM05D004214 ORTHO05D004963 7.6e-16 88.6 121 38.8
MD09G1055400 Malus domestica HOM05D004214 ORTHO05D004963 4.2e-14 82.8 176 27.3
Gohir.D11G074550 Gossypium hirsutum HOM05D004214 ORTHO05D004963 4.6e-13 79.3 86 44.2
Gorai.007G080000 Gossypium raimondii HOM05D004214 ORTHO05D004963 6.0e-13 79.0 86 44.2
Glyma.13G061800 Glycine max HOM05D004214 ORTHO05D004963 1.3e-12 77.8 98 35.7
CsaV3_3G041190 Cucumis sativus L. HOM05D004214 ORTHO05D004963 1.9e-11 73.9 192 25.5
BolC9t55376H Brassica oleracea HOM05D004214 ORTHO05D004963 1.3e-10 71.2 82 41.5
MELO3C009848.2 Cucumis melo HOM05D004214 ORTHO05D004963 1.3e-10 71.2 145 29.0
Aa31LG9G16510 Aethionema arabicum HOM05D004214 ORTHO05D004963 2.1e-10 70.5 46 69.6
C06p18570 Brassica napus HOM05D004214 ORTHO05D004963 3.7e-10 69.7 83 43.4
Pp3c1_32760 Physcomitrium patens HOM05D019249 ORTHO05D019657 1.4e-09 67.8 245 26.5
Lj3A364T22 Lonicera japonica HOM05D004214 ORTHO05D004963 1.8e-09 67.4 66 48.5
BraA07t29702Z Brassica rapa HOM05D004214 ORTHO05D004963 1.2e-08 64.7 74 45.9
AagrBONN_evm.TU.Sc2ySwM_362.234 Anthoceros agrestis HOM05D019249 ORTHO05D019657 2.6e-08 63.5 238 24.4
Sabra17G0077200 Salix brachista HOM05D004214 ORTHO05D004963 7.6e-08 62.0 51 56.9
Mapoly0024s0002 Marchantia polymorpha HOM05D019249 ORTHO05D019657 1.3e-07 61.2 216 24.1
Os10g0580600 Oryza sativa ssp. japonica HOM05D004214 ORTHO05D004963 2.9e-07 60.1 51 52.9
Lj3A350G16 Lonicera japonica HOM05D004214 ORTHO05D004963 1.9e-06 57.4 62 45.2
BolC6t37070H Brassica oleracea HOM05D004214 ORTHO05D004963 4.2e-06 56.2 55 43.6


User provided reference genes

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