Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SEGI_32363 Sequoiadendron giganteum HOM05D003472 ORTHO05D049298 1.8e-69 265.8 133 100.0
SEGI_06448 Sequoiadendron giganteum HOM05D003472 ORTHO05D004200 1.4e-32 143.3 73 90.4
ATR0757G010 Amborella trichopoda HOM05D003472 ORTHO05D004200 9.4e-26 120.6 72 72.2
Dinv23367 Davidia involucrata HOM05D003472 ORTHO05D004200 3.4e-23 112.1 74 64.9
Ah.12g052970 Amaranthus hybridus HOM05D003472 ORTHO05D007906 5.7e-23 111.3 72 63.9
EL10Ac5g12473 Beta vulgaris HOM05D003472 ORTHO05D004200 1.3e-22 110.2 72 65.3
Rhsim08G0015900 Rhododendron simsii HOM05D003472 ORTHO05D004200 1.3e-22 110.2 72 66.7
Dinv02502 Davidia involucrata HOM05D003472 ORTHO05D004200 1.7e-22 109.8 72 65.3
MBI12_g15036_MAGBIO Magnolia biondii HOM05D003472 ORTHO05D004200 1.7e-22 109.8 72 63.9
AUR62007025 Chenopodium quinoa HOM05D003472 ORTHO05D004200 2.8e-22 109.0 73 64.4
Ciclev10000621m.g Citrus clementina HOM05D003472 ORTHO05D004200 2.8e-22 109.0 73 67.1
Manes.01G053600 Manihot esculenta HOM05D003472 ORTHO05D004200 2.8e-22 109.0 81 63.0
Hund11368 Selenicereus undatus HOM05D003472 ORTHO05D004200 2.8e-22 109.0 101 53.5
Prupe.5G126300 Prunus persica HOM05D003472 ORTHO05D004200 3.7e-22 108.6 100 53.0
HPP92_014452 Vanilla planifolia HOM05D003472 ORTHO05D004200 4.8e-22 108.2 72 63.9
Nn1g00321 Nelumbo nucifera HOM05D003472 ORTHO05D004200 8.3e-22 107.5 83 56.6
PSO170G3423 Papaver somniferum HOM05D003472 ORTHO05D004200 8.3e-22 107.5 84 59.5
RcHm_v2.0_Chr7g0186361 Rosa chinensis HOM05D003472 ORTHO05D004200 1.4e-21 106.7 73 63.0
FvH4_5g11460 Fragaria vesca HOM05D003472 ORTHO05D004200 1.8e-21 106.3 73 63.0
FAN04G2329 Fragaria x ananassa HOM05D003472 ORTHO05D004200 1.8e-21 106.3 73 63.0
FAN13G1911 Fragaria x ananassa HOM05D003472 ORTHO05D004200 1.8e-21 106.3 73 63.0
FAN18G4027 Fragaria x ananassa HOM05D003472 ORTHO05D004200 1.8e-21 106.3 73 63.0
Oeu009994.1 Olea europaea HOM05D003472 ORTHO05D004200 2.4e-21 105.9 75 64.0
Peaxi162Scf00074g00435 Petunia axillaris HOM05D003472 ORTHO05D004200 2.4e-21 105.9 73 58.9
CiPaw.12G079900 Carya illinoinensis HOM05D003472 ORTHO05D004200 3.1e-21 105.5 72 61.1
Haze_09134 Corylus avellana HOM05D003472 ORTHO05D004200 3.1e-21 105.5 72 62.5
Sc01g0010480 Simmondsia chinensis HOM05D003472 ORTHO05D004200 3.1e-21 105.5 73 61.6
Migut.I01165 Erythranthe guttata HOM05D003472 ORTHO05D004200 4.1e-21 105.1 73 63.0
SEGI_04080 Sequoiadendron giganteum HOM05D003472 ORTHO05D004200 4.1e-21 105.1 72 63.9
Potri.001G087100 Populus trichocarpa HOM05D003472 ORTHO05D004200 5.4e-21 104.8 82 58.5
Sabra01G0063300 Salix brachista HOM05D003472 ORTHO05D004200 5.4e-21 104.8 82 58.5
MSTRG.24857 Avicennia marina HOM05D003472 ORTHO05D004200 7.0e-21 104.4 72 59.7
Cfa011959 Carpinus fangiana HOM05D003472 ORTHO05D004200 7.0e-21 104.4 72 61.1
QL02p028412 Quercus lobata HOM05D003472 ORTHO05D004200 9.1e-21 104.0 100 51.0
CAN.G567.65 Capsicum annuum HOM05D003472 ORTHO05D004200 1.2e-20 103.6 71 60.6
Cc08_g16500 Coffea canephora HOM05D003472 ORTHO05D004200 1.2e-20 103.6 72 59.7
Nitab4.5_0002439g0080 Nicotiana tabacum HOM05D003472 ORTHO05D004200 1.2e-20 103.6 71 60.6
Nitab4.5_0002439g0130 Nicotiana tabacum HOM05D003472 ORTHO05D004200 1.2e-20 103.6 70 61.4
Rhsim07G0079700 Rhododendron simsii HOM05D003472 ORTHO05D004200 1.2e-20 103.6 84 54.8
vmacro22586 Vaccinium macrocarpon HOM05D003472 ORTHO05D004200 1.2e-20 103.6 72 62.5
CDE07G1940 Ceratophyllum demersum HOM05D003472 ORTHO05D004200 1.6e-20 103.2 74 59.5
FAN08G2572 Fragaria x ananassa HOM05D003472 ORTHO05D004200 1.6e-20 103.2 73 61.6
QL02p005551 Quercus lobata HOM05D000369 ORTHO05D004200 1.6e-20 103.2 72 61.1
Sabra03G0104400 Salix brachista HOM05D003472 ORTHO05D004200 1.6e-20 103.2 81 58.0
CDE04G3265 Ceratophyllum demersum HOM05D003472 ORTHO05D004200 2.0e-20 102.8 84 54.8
ClCG01G001880 Citrullus lanatus HOM05D003472 ORTHO05D004200 2.0e-20 102.8 73 63.0
MELO3C005751.2 Cucumis melo HOM05D003472 ORTHO05D004200 2.0e-20 102.8 71 63.4
CsaV3_5G002020 Cucumis sativus L. HOM05D003472 ORTHO05D004200 2.0e-20 102.8 85 52.9
ECA246G2504 Erigeron canadensis HOM05D003472 ORTHO05D004200 2.0e-20 102.8 72 59.7
Os10g0521000 Oryza sativa ssp. japonica HOM05D003472 ORTHO05D004200 2.0e-20 102.8 72 65.3
TAR629G3421 Trochodendron aralioides HOM05D003472 ORTHO05D004200 2.0e-20 102.8 72 62.5
vmacro11524 Vaccinium macrocarpon HOM05D003472 ORTHO05D004200 2.0e-20 102.8 72 62.5
Haze_09126 Corylus avellana HOM05D003472 ORTHO05D004200 2.7e-20 102.4 72 59.7
Nitab4.5_0006889g0030 Nicotiana tabacum HOM05D003472 ORTHO05D004200 2.7e-20 102.4 76 56.6
Solyc08g082860.4 Solanum lycopersicum HOM05D003472 ORTHO05D004200 2.7e-20 102.4 72 58.3
Sopen08g031090 Solanum pennellii HOM05D003472 ORTHO05D004200 2.7e-20 102.4 72 58.3
MSTRG.24856 Avicennia marina HOM05D003472 ORTHO05D004200 3.5e-20 102.1 72 58.3
Ca_17451_v3 Cicer arietinum L. HOM05D003472 ORTHO05D004200 3.5e-20 102.1 109 45.9
Nitab4.5_0006889g0020 Nicotiana tabacum HOM05D003472 ORTHO05D004200 3.5e-20 102.1 76 56.6
Potri.003G144000 Populus trichocarpa HOM05D003472 ORTHO05D004200 3.5e-20 102.1 81 56.8
GSVIVG01019610001 Vitis vinifera HOM05D003472 ORTHO05D004200 3.5e-20 102.1 110 46.4
CSS0008297 Camellia sinensis var. sinensis HOM05D003472 ORTHO05D004200 4.5e-20 101.7 72 61.1
CSS0044761 Camellia sinensis var. sinensis HOM05D003472 ORTHO05D004200 4.5e-20 101.7 72 61.1
Gohir.A02G096900 Gossypium hirsutum HOM05D003472 ORTHO05D004200 4.5e-20 101.7 84 53.6
Gorai.003G075200 Gossypium raimondii HOM05D003472 ORTHO05D004200 4.5e-20 101.7 84 53.6
HanXRQChr06g0166301 Helianthus annuus HOM05D003472 ORTHO05D004200 4.5e-20 101.7 72 58.3
Lsat_1_v5_gn_3_12621 Lactuca sativa HOM05D003472 ORTHO05D004200 4.5e-20 101.7 84 53.6
Actinidia22188 Actinidia chinensis HOM05D003472 ORTHO05D004200 5.9e-20 101.3 72 61.1
DCAR_010023 Daucus carota HOM05D003472 ORTHO05D004200 5.9e-20 101.3 72 58.3
MD06G1113500 Malus domestica HOM05D003472 ORTHO05D004200 5.9e-20 101.3 72 61.1
MD14G1134600 Malus domestica HOM05D003472 ORTHO05D004200 5.9e-20 101.3 72 62.5
Manes.02G005400 Manihot esculenta HOM05D003472 ORTHO05D004200 5.9e-20 101.3 84 54.8
PGSC0003DMG400012252 Solanum tuberosum HOM05D003472 ORTHO05D004200 5.9e-20 101.3 72 56.9
TPR.G3439 Trifolium pratense HOM05D003472 ORTHO05D004200 5.9e-20 101.3 81 55.6
Sed0019208 Sechium edule HOM05D003472 ORTHO05D004200 7.7e-20 100.9 85 51.8
CSS0029461 Camellia sinensis var. sinensis HOM05D003472 ORTHO05D004200 1.0e-19 100.5 72 59.7
CiPaw.11G115400 Carya illinoinensis HOM05D003472 ORTHO05D004200 1.0e-19 100.5 100 49.0
PGR042G1639 Punica granatum HOM05D003472 ORTHO05D004200 1.0e-19 100.5 72 61.1
Sabra03G0104300 Salix brachista HOM05D003472 ORTHO05D004200 1.0e-19 100.5 71 62.0
unitig_747.g22055 Utricularia gibba HOM05D003472 ORTHO05D004200 1.0e-19 100.5 72 58.3
Aqoxy5G04302 Aquilegia oxysepala HOM05D003472 ORTHO05D004200 1.3e-19 100.1 72 59.7
Gohir.D03G086900 Gossypium hirsutum HOM05D003472 ORTHO05D004200 1.3e-19 100.1 75 56.0
Ciclev10033306m.g Citrus clementina HOM05D003472 ORTHO05D004200 1.7e-19 99.8 72 61.1
SalBow6G0547 Salvia bowleyana HOM05D003472 ORTHO05D004200 1.7e-19 99.8 72 61.1
Potri.003G143900 Populus trichocarpa HOM05D003472 ORTHO05D004200 2.3e-19 99.4 82 54.9
SMO119G0122 Selaginella moellendorffii HOM05D003472 ORTHO05D004200 2.9e-19 99.0 72 58.3
AL7G29240 Arabidopsis lyrata HOM05D003472 ORTHO05D004200 3.8e-19 98.6 71 60.6
Medtr8g099985 Medicago truncatula HOM05D003472 ORTHO05D004200 5.0e-19 98.2 81 53.1
Psat7g022760 Pisum sativum HOM05D003472 ORTHO05D004200 5.0e-19 98.2 81 54.3
Hma1.2p1_1835F.1_g304660 Hydrangea macrophylla HOM05D003472 ORTHO05D004200 6.6e-19 97.8 72 59.7
Thecc.03G304400 Theobroma cacao HOM05D003472 ORTHO05D004200 6.6e-19 97.8 72 59.7
arahy.Tifrunner.gnm1.ann1.69PAS2 Arachis hypogaea HOM05D003472 ORTHO05D004200 8.6e-19 97.4 83 53.0
Thhalv10024684m.g Eutrema salsugineum HOM05D003472 ORTHO05D004200 8.6e-19 97.4 71 62.0
QL02p028420 Quercus lobata HOM05D003472 ORTHO05D004200 8.6e-19 97.4 72 58.3
A01p15310 Brassica napus HOM05D003472 ORTHO05D004200 1.1e-18 97.1 81 55.6
BraA01t01475Z Brassica rapa HOM05D003472 ORTHO05D004200 1.1e-18 97.1 81 55.6
THA.LOC104806447 Tarenaya hassleriana HOM05D003472 ORTHO05D004200 1.1e-18 97.1 71 57.7
arahy.Tifrunner.gnm1.ann1.5YP9G9 Arachis hypogaea HOM05D003472 ORTHO05D004200 1.5e-18 96.7 81 53.1
BolC7t45827H Brassica oleracea HOM05D003472 ORTHO05D004200 1.5e-18 96.7 70 61.4
CANSAT21G1016 Cannabis sativa HOM05D003472 ORTHO05D004200 1.5e-18 96.7 73 58.9
Duzib205G0077 Durio zibethinus HOM05D003472 ORTHO05D004200 1.5e-18 96.7 83 54.2
Lj4g0019041 Lotus japonicus HOM05D003472 ORTHO05D004200 1.5e-18 96.7 81 53.1
BcaC09g50919 Brassica carinata HOM05D003472 ORTHO05D004200 1.9e-18 96.3 71 60.6
A03p54940 Brassica napus HOM05D003472 ORTHO05D004200 1.9e-18 96.3 70 61.4
C01p19260 Brassica napus HOM05D003472 ORTHO05D004200 1.9e-18 96.3 71 60.6
BolC1t01851H Brassica oleracea HOM05D003472 ORTHO05D004200 1.9e-18 96.3 71 60.6
BraA03t14559Z Brassica rapa HOM05D003472 ORTHO05D004200 1.9e-18 96.3 70 61.4
COL.COLO4_10760 Corchorus olitorius HOM05D003472 ORTHO05D004200 1.9e-18 96.3 84 52.4
Sp7g22010 Schrenkiella parvula HOM05D003472 ORTHO05D004200 1.9e-18 96.3 71 60.6
Thecc.03G304700 Theobroma cacao HOM05D003472 ORTHO05D004200 1.9e-18 96.3 84 53.6
AT4G24040 Arabidopsis thaliana HOM05D003472 ORTHO05D004200 2.5e-18 95.9 71 60.6
Phvul.002G301500 Phaseolus vulgaris HOM05D003472 ORTHO05D004200 2.5e-18 95.9 72 58.3
AagrBONN_evm.TU.Sc2ySwM_117.3367 Anthoceros agrestis HOM05D003472 ORTHO05D004200 3.3e-18 95.5 80 53.8
BcaNung01109 Brassica carinata HOM05D003472 ORTHO05D004200 3.3e-18 95.5 71 60.6
Eucgr.E01027 Eucalyptus grandis HOM05D003472 ORTHO05D004200 3.3e-18 95.5 72 61.1
BcaNung05698 Brassica carinata HOM05D003472 ORTHO05D004200 5.5e-18 94.7 70 61.4
BcaNung06470 Brassica carinata HOM05D003472 ORTHO05D004200 5.5e-18 94.7 70 61.4
C07p53330 Brassica napus HOM05D003472 ORTHO05D004200 5.5e-18 94.7 70 60.0
Glyma.05G219800 Glycine max HOM05D003472 ORTHO05D004200 5.5e-18 94.7 81 50.6
CARHR231440 Cardamine hirsuta HOM05D003472 ORTHO05D004200 7.2e-18 94.4 71 59.2
Gohir.A11G019500 Gossypium hirsutum HOM05D003472 ORTHO05D004200 7.2e-18 94.4 83 50.6
Gohir.D11G019200 Gossypium hirsutum HOM05D003472 ORTHO05D004200 7.2e-18 94.4 83 50.6
Zm00001eb021270 Zea mays HOM05D003472 ORTHO05D004200 9.5e-18 94.0 72 59.7
Gorai.007G020500 Gossypium raimondii HOM05D003472 ORTHO05D004200 1.2e-17 93.6 83 50.6
Mapoly0014s0133 Marchantia polymorpha HOM05D003472 ORTHO05D004200 1.2e-17 93.6 70 61.4
VMungo0251G0959 Vigna mungo HOM05D003472 ORTHO05D004200 1.2e-17 93.6 71 56.3
Nn7g36715 Nelumbo nucifera HOM05D003472 ORTHO05D049298 1.6e-17 93.2 73 56.2
PGR042G3552 Punica granatum HOM05D003472 ORTHO05D004200 1.6e-17 93.2 70 58.6
Carub.0007s1705 Capsella rubella HOM05D003472 ORTHO05D004200 2.1e-17 92.8 71 56.3
Thecc.03G305100 Theobroma cacao HOM05D003472 ORTHO05D004200 2.1e-17 92.8 84 50.0
PGR031G0912 Punica granatum HOM05D003472 ORTHO05D004200 4.7e-17 91.7 82 54.9
Aqoxy5G04304 Aquilegia oxysepala HOM05D003472 ORTHO05D004200 6.1e-17 91.3 83 48.2
SGA_v2.0_scaffold198G41058 Striga asiatica HOM05D003472 ORTHO05D004200 6.1e-17 91.3 72 59.7
ClCG01G001870 Citrullus lanatus HOM05D003472 ORTHO05D004200 8.0e-17 90.9 73 56.2
Cpa.g.sc15.13 Carica papaya HOM05D003472 ORTHO05D004200 1.0e-16 90.5 83 49.4
Pp3c16_7830 Physcomitrium patens HOM05D003472 ORTHO05D004200 1.0e-16 90.5 72 56.9
Pp3c5_16470 Physcomitrium patens HOM05D003472 ORTHO05D004200 1.8e-16 89.7 72 56.9
Rhsim02G0248900 Rhododendron simsii HOM05D003472 ORTHO05D004200 3.0e-16 89.0 64 60.9
SHI06939 Sapria himalayana HOM05D003472 ORTHO05D004200 4.0e-16 88.6 71 50.7
arahy.Tifrunner.gnm1.ann1.TJXZ67 Arachis hypogaea HOM05D003472 ORTHO05D004200 8.9e-16 87.4 83 48.2
Lalb_Chr05g0223881 Lupinus albus HOM05D003472 ORTHO05D004200 8.9e-16 87.4 62 59.7
TWI60G0599 Tripterygium wilfordii HOM05D003472 ORTHO05D004200 8.9e-16 87.4 85 48.2
CANSAT21G0971 Cannabis sativa HOM05D003472 ORTHO05D004200 2.0e-15 86.3 100 46.0
PGR031G2218 Punica granatum HOM05D003472 ORTHO05D004200 5.7e-15 84.7 83 51.8
TWI60G0449 Tripterygium wilfordii HOM05D003472 ORTHO05D004200 3.7e-14 82.0 85 44.7
CBR_g24063 Chara braunii HOM05D003472 ORTHO05D004200 4.1e-13 78.6 73 47.9
Pp3c24_9748 Physcomitrium patens HOM05D003472 ORTHO05D004200 7.0e-13 77.8 72 51.4
Pp3c24_9750 Physcomitrium patens HOM05D003472 ORTHO05D004200 7.0e-13 77.8 72 51.4
SMO165G0094 Selaginella moellendorffii HOM05D003472 ORTHO05D004200 3.5e-12 75.5 70 50.0
SMO165G0115 Selaginella moellendorffii HOM05D003472 ORTHO05D004200 3.5e-12 75.5 70 50.0
SMO272G0034 Selaginella moellendorffii HOM05D003472 ORTHO05D004200 3.5e-12 75.5 70 50.0
vmacro13868 Vaccinium macrocarpon HOM05D003472 ORTHO05D004200 3.5e-12 75.5 78 47.4
Ciclev10023271m.g Citrus clementina HOM05D003472 ORTHO05D004200 5.9e-12 74.7 56 57.1
Pp3c23_11240 Physcomitrium patens HOM05D003472 ORTHO05D004200 5.9e-12 74.7 72 47.2
CiPaw.11G115500 Carya illinoinensis HOM05D003472 ORTHO05D004200 1.0e-11 73.9 50 56.0
Dinv06032 Davidia involucrata HOM05D003472 ORTHO05D004200 1.0e-11 73.9 51 60.8
Mapoly0055s0045 Marchantia polymorpha HOM05D003472 ORTHO05D004200 1.7e-11 73.2 72 50.0
Rhsim08G0020400 Rhododendron simsii HOM05D003472 ORTHO05D004200 1.9e-10 69.7 72 50.0
CSS0021198 Camellia sinensis var. sinensis HOM05D003472 ORTHO05D004200 4.4e-07 58.5 39 64.1
vmacro09228 Vaccinium macrocarpon HOM05D003472 ORTHO05D004200 7.5e-07 57.8 34 70.6
QL04p070330 Quercus lobata HOM05D000064 ORTHO05D001902 1.7e-06 56.6 81 42.0


User provided reference genes

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