Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SEGI_31918 Sequoiadendron giganteum HOM05D006135 ORTHO05D007533 2.7e-79 298.5 144 100.0
SEGI_08813 Sequoiadendron giganteum HOM05D000087 ORTHO05D006949 9.9e-21 104.0 73 74.0
EL10Ac6g14988 Beta vulgaris HOM05D006135 ORTHO05D007533 2.9e-20 102.4 67 64.2
PGR119G0479 Punica granatum HOM05D006135 ORTHO05D007533 8.4e-20 100.9 67 59.7
SEGI_26596 Sequoiadendron giganteum HOM05D000967 ORTHO05D007533 1.4e-19 100.1 61 80.3
Dinv16720 Davidia involucrata HOM05D006135 ORTHO05D007533 1.9e-19 99.8 76 59.2
Sp1g12090 Schrenkiella parvula HOM05D006135 ORTHO05D007533 3.2e-19 99.0 67 59.7
Aa31LG2G7130 Aethionema arabicum HOM05D006135 ORTHO05D007533 4.2e-19 98.6 67 59.7
Carub.0001s1357 Capsella rubella HOM05D006135 ORTHO05D007533 4.2e-19 98.6 67 59.7
Ciclev10032231m.g Citrus clementina HOM05D006135 ORTHO05D007533 4.2e-19 98.6 60 70.0
SMO115G0347 Selaginella moellendorffii HOM05D006135 ORTHO05D007533 4.2e-19 98.6 58 65.5
BcaB03g13127 Brassica carinata HOM05D006135 ORTHO05D007533 7.1e-19 97.8 67 56.7
CARHR014240 Cardamine hirsuta HOM05D006135 ORTHO05D007533 1.2e-18 97.1 67 59.7
Haze_11974 Corylus avellana HOM05D006135 ORTHO05D007533 1.2e-18 97.1 61 65.6
vmacro19077 Vaccinium macrocarpon HOM05D006135 ORTHO05D007533 1.2e-18 97.1 67 58.2
ATR1136G145 Amborella trichopoda HOM05D006135 ORTHO05D007533 1.6e-18 96.7 61 68.9
Hma1.2p1_0357F.1_g134610 Hydrangea macrophylla HOM05D006135 ORTHO05D007533 1.6e-18 96.7 60 68.3
SEGI_21663 Sequoiadendron giganteum HOM05D003391 ORTHO05D005563 1.6e-18 96.7 64 78.1
TAR622G1353 Trochodendron aralioides HOM05D006135 ORTHO05D007533 1.6e-18 96.7 60 66.7
Ah.04g155380 Amaranthus hybridus HOM05D001254 ORTHO05D007533 2.1e-18 96.3 67 58.2
AUR62007931 Chenopodium quinoa HOM05D006135 ORTHO05D007533 2.7e-18 95.9 67 58.2
AUR62013291 Chenopodium quinoa HOM05D006135 ORTHO05D007533 2.7e-18 95.9 67 58.2
Aa31LG1G1130 Aethionema arabicum HOM05D006135 ORTHO05D007533 3.5e-18 95.5 67 58.2
AT1G13870 Arabidopsis thaliana HOM05D006135 ORTHO05D007533 3.5e-18 95.5 67 58.2
CiPaw.06G091600 Carya illinoinensis HOM05D006135 ORTHO05D007533 3.5e-18 95.5 60 65.0
MELO3C011427.2 Cucumis melo HOM05D006135 ORTHO05D007533 3.5e-18 95.5 61 63.9
THA.LOC104824063 Tarenaya hassleriana HOM05D006135 ORTHO05D007533 3.5e-18 95.5 68 61.8
TPR.G19440 Trifolium pratense HOM05D006135 ORTHO05D007533 3.5e-18 95.5 68 57.4
Atru.chr11.1655 Acer truncatum HOM05D006135 ORTHO05D007533 4.6e-18 95.1 63 68.3
CSS0045883 Camellia sinensis var. sinensis HOM05D006135 ORTHO05D007533 4.6e-18 95.1 67 59.7
Zm00001eb298610 Zea mays HOM05D006135 ORTHO05D007533 4.6e-18 95.1 67 61.2
Lalb_Chr10g0096961 Lupinus albus HOM05D006135 ORTHO05D007533 6.0e-18 94.7 56 69.6
Prupe.1G285000 Prunus persica HOM05D006135 ORTHO05D007533 6.0e-18 94.7 60 65.0
Sc04g0007660 Simmondsia chinensis HOM05D006135 ORTHO05D007533 6.0e-18 94.7 61 63.9
Thecc.02G333100 Theobroma cacao HOM05D006135 ORTHO05D007533 7.8e-18 94.4 60 63.3
Aqoxy6G00083 Aquilegia oxysepala HOM05D006135 ORTHO05D007533 1.0e-17 94.0 60 66.7
BcaC07g41617 Brassica carinata HOM05D006135 ORTHO05D007533 1.0e-17 94.0 67 56.7
C08p46210 Brassica napus HOM05D006135 ORTHO05D007533 1.0e-17 94.0 67 56.7
BolC8t52170H Brassica oleracea HOM05D006135 ORTHO05D007533 1.0e-17 94.0 67 56.7
FAN22G2161 Fragaria x ananassa HOM05D006135 ORTHO05D007533 1.0e-17 94.0 68 60.3
Lj3g0000255 Lotus japonicus HOM05D006135 ORTHO05D007533 1.0e-17 94.0 60 65.0
A09p62650 Brassica napus HOM05D006135 ORTHO05D007533 1.3e-17 93.6 67 56.7
Duzib268G0538 Durio zibethinus HOM05D006135 ORTHO05D007533 1.3e-17 93.6 55 72.7
FAN07G2159 Fragaria x ananassa HOM05D006135 ORTHO05D007533 1.3e-17 93.6 68 60.3
FAN17G2903 Fragaria x ananassa HOM05D006135 ORTHO05D007533 1.3e-17 93.6 68 60.3
PSO170G2502 Papaver somniferum HOM05D006135 ORTHO05D007533 1.3e-17 93.6 60 63.3
QL03p071327 Quercus lobata HOM05D006135 ORTHO05D007533 1.3e-17 93.6 60 65.0
Rhsim08G0202600 Rhododendron simsii HOM05D006135 ORTHO05D007533 1.3e-17 93.6 67 55.2
BraA08t35146Z Brassica rapa HOM05D006135 ORTHO05D007533 1.7e-17 93.2 60 61.7
CDE04G1019 Ceratophyllum demersum HOM05D006135 ORTHO05D007533 1.7e-17 93.2 60 63.3
Gohir.A03G103900 Gossypium hirsutum HOM05D006135 ORTHO05D007533 1.7e-17 93.2 53 73.6
HanXRQChr12g0375331 Helianthus annuus HOM05D006135 ORTHO05D007533 1.7e-17 93.2 67 58.2
Sed0023480 Sechium edule HOM05D006135 ORTHO05D007533 1.7e-17 93.2 67 59.7
Medtr8g446960 Medicago truncatula HOM05D006135 ORTHO05D007533 2.3e-17 92.8 59 62.7
BcaB08g34333 Brassica carinata HOM05D006135 ORTHO05D007533 3.0e-17 92.4 67 56.7
Cpa.g.sc1.112 Carica papaya HOM05D006135 ORTHO05D007533 3.0e-17 92.4 61 63.9
MBI03_g07691_MAGBIO Magnolia biondii HOM05D006135 ORTHO05D007533 3.0e-17 92.4 60 61.7
Psat4g154880 Pisum sativum HOM05D006135 ORTHO05D007533 3.0e-17 92.4 57 63.2
FvH4_4g30260 Fragaria vesca HOM05D006135 ORTHO05D007533 3.9e-17 92.0 68 60.3
FAN12G3645 Fragaria x ananassa HOM05D006135 ORTHO05D007533 3.9e-17 92.0 68 60.3
Gohir.D02G129100 Gossypium hirsutum HOM05D006135 ORTHO05D007533 3.9e-17 92.0 53 73.6
Gorai.005G144800 Gossypium raimondii HOM05D006135 ORTHO05D007533 3.9e-17 92.0 53 73.6
AL1G25700 Arabidopsis lyrata HOM05D006135 ORTHO05D007533 5.1e-17 91.7 56 66.1
COL.COLO4_27903 Corchorus olitorius HOM05D006135 ORTHO05D007533 5.1e-17 91.7 60 61.7
BcaC07g38705 Brassica carinata HOM05D006135 ORTHO05D007533 6.6e-17 91.3 60 60.0
C08p16350 Brassica napus HOM05D006135 ORTHO05D007533 6.6e-17 91.3 60 60.0
BolC8t49259H Brassica oleracea HOM05D006135 ORTHO05D007533 6.6e-17 91.3 60 60.0
Lj6P780T42 Lonicera japonica HOM05D006135 ORTHO05D007533 6.6e-17 91.3 60 65.0
MD16G1062500 Malus domestica HOM05D006135 ORTHO05D007533 6.6e-17 91.3 60 61.7
A08p32230 Brassica napus HOM05D006135 ORTHO05D007533 8.7e-17 90.9 60 60.0
ClCG08G010310 Citrullus lanatus HOM05D006135 ORTHO05D008017 8.7e-17 90.9 60 63.3
RcHm_v2.0_Chr4g0438561 Rosa chinensis HOM05D006135 ORTHO05D007533 8.7e-17 90.9 55 67.3
Sabra08G0071100 Salix brachista HOM05D006135 ORTHO05D007533 8.7e-17 90.9 60 61.7
VMungo0331G1135 Vigna mungo HOM05D006135 ORTHO05D007533 8.7e-17 90.9 55 67.3
CANSAT64G3010 Cannabis sativa HOM05D006135 ORTHO05D007533 1.1e-16 90.5 61 60.7
Eucgr.G02457 Eucalyptus grandis HOM05D006135 ORTHO05D007533 1.1e-16 90.5 55 65.5
Medtr8g030830 Medicago truncatula HOM05D006135 ORTHO05D007533 1.5e-16 90.1 59 61.0
BraA09t41629Z Brassica rapa HOM05D006135 ORTHO05D007533 1.9e-16 89.7 67 55.2
Migut.L01201 Erythranthe guttata HOM05D006135 ORTHO05D007533 1.9e-16 89.7 60 60.0
Manes.07G067750 Manihot esculenta HOM05D006135 ORTHO05D007533 1.9e-16 89.7 61 60.7
Manes.07G067800 Manihot esculenta HOM05D006135 ORTHO05D007533 1.9e-16 89.7 61 60.7
Potri.008G094600 Populus trichocarpa HOM05D006135 ORTHO05D007533 1.9e-16 89.7 60 61.7
Dinv34082 Davidia involucrata HOM05D006135 ORTHO05D008017 2.5e-16 89.4 60 63.3
CsaV3_6G032530 Cucumis sativus L. HOM05D006135 ORTHO05D007533 3.3e-16 89.0 60 60.0
CsaV3_6G033610 Cucumis sativus L. HOM05D006135 ORTHO05D007533 3.3e-16 89.0 60 60.0
Phvul.010G098900 Phaseolus vulgaris HOM05D006135 ORTHO05D007533 3.3e-16 89.0 55 67.3
Phvul.011G076500 Phaseolus vulgaris HOM05D006135 ORTHO05D007533 3.3e-16 89.0 55 67.3
MSTRG.745 Avicennia marina HOM05D006135 ORTHO05D007533 4.3e-16 88.6 60 60.0
HanXRQChr13g0417131 Helianthus annuus HOM05D006135 ORTHO05D007533 4.3e-16 88.6 67 56.7
Glyma.07G070800 Glycine max HOM05D006135 ORTHO05D007533 5.6e-16 88.2 55 65.5
Peaxi162Scf00155g00910 Petunia axillaris HOM05D006135 ORTHO05D007533 5.6e-16 88.2 61 57.4
Lsat_1_v5_gn_3_56041 Lactuca sativa HOM05D006135 ORTHO05D007533 7.3e-16 87.8 61 60.7
Sabra10G0121200 Salix brachista HOM05D006135 ORTHO05D007533 7.3e-16 87.8 60 60.0
TAR374G0384 Trochodendron aralioides HOM05D006135 ORTHO05D007533 7.3e-16 87.8 60 65.0
CANSAT64G1447 Cannabis sativa HOM05D006135 ORTHO05D007533 9.6e-16 87.4 61 59.0
Duzib251G0397 Durio zibethinus HOM05D006135 ORTHO05D007533 9.6e-16 87.4 61 59.0
Nitab4.5_0000100g0120 Nicotiana tabacum HOM05D006135 ORTHO05D007533 9.6e-16 87.4 61 57.4
Nitab4.5_0000607g0040 Nicotiana tabacum HOM05D006135 ORTHO05D007533 9.6e-16 87.4 61 57.4
Oeu004576.4 Olea europaea HOM05D006135 ORTHO05D007533 9.6e-16 87.4 60 61.7
SalBow6G2218 Salvia bowleyana HOM05D006135 ORTHO05D007533 9.6e-16 87.4 60 58.3
SalBow6G7020 Salvia bowleyana HOM05D006135 ORTHO05D007533 9.6e-16 87.4 60 58.3
HPP92_017746 Vanilla planifolia HOM05D006135 ORTHO05D007533 9.6e-16 87.4 67 55.2
Cc11_g12150 Coffea canephora HOM05D006135 ORTHO05D007533 1.3e-15 87.0 60 60.0
ECA246G3492 Erigeron canadensis HOM05D006135 ORTHO05D007533 1.3e-15 87.0 67 53.7
SalBow2G1772 Salvia bowleyana HOM05D006135 ORTHO05D007533 1.3e-15 87.0 60 60.0
SalBow2G2095 Salvia bowleyana HOM05D006135 ORTHO05D007533 1.3e-15 87.0 60 60.0
Solyc08g008250.3 Solanum lycopersicum HOM05D006135 ORTHO05D007533 1.3e-15 87.0 61 57.4
Sopen08g004100 Solanum pennellii HOM05D006135 ORTHO05D007533 1.3e-15 87.0 61 57.4
CAN.G792.64 Capsicum annuum HOM05D006135 ORTHO05D007533 2.8e-15 85.9 61 55.7
PSO017G0525 Papaver somniferum HOM05D006135 ORTHO05D007533 4.8e-15 85.1 62 61.3
PGSC0003DMG400005786 Solanum tuberosum HOM05D006135 ORTHO05D007533 6.2e-15 84.7 61 55.7
Mapoly0008s0061 Marchantia polymorpha HOM05D006135 ORTHO05D007533 1.1e-14 84.0 56 60.7
SHI21260 Sapria himalayana HOM05D006135 ORTHO05D007533 1.1e-14 84.0 55 60.0
SGA_v2.0_scaffold308G48068 Striga asiatica HOM05D006135 ORTHO05D007533 2.6e-13 79.3 63 49.2
unitig_22.g6497 Utricularia gibba HOM05D006135 ORTHO05D007533 5.8e-13 78.2 61 55.7
SGA_v2.0_scaffold36G14447 Striga asiatica HOM05D006135 ORTHO05D007533 6.4e-12 74.7 63 47.6
Pp3c10_170 Physcomitrium patens HOM05D006135 ORTHO05D007533 4.2e-11 72.0 61 50.8
Cre17.g711050 Chlamydomonas reinhardtii HOM05D006135 ORTHO05D007533 5.4e-11 71.6 58 53.4
MCO02G221 Micromonas commoda HOM05D006135 ORTHO05D007533 1.9e-08 63.2 73 39.7
SEGI_31749 Sequoiadendron giganteum HOM05D004672 ORTHO05D005732 2.1e-07 59.7 49 69.4
SEGI_33083 Sequoiadendron giganteum HOM05D000121 ORTHO05D000102 2.8e-07 59.3 37 81.1
SEGI_31008 Sequoiadendron giganteum HOM05D000006 ORTHO05D000001 4.8e-07 58.5 37 78.4
SEGI_30667 Sequoiadendron giganteum HOM05D003523 ORTHO05D004493 1.1e-06 57.4 37 75.7
CBR_g32247 Chara braunii HOM05D006135 ORTHO05D007533 3.1e-06 55.8 75 37.3
SEGI_37358 Sequoiadendron giganteum HOM05D005389 ORTHO05D008484 3.1e-06 55.8 49 63.3
SEGI_26656 Sequoiadendron giganteum HOM05D003469 ORTHO05D000001 4.0e-06 55.5 59 47.5
SEGI_15415 Sequoiadendron giganteum HOM05D000002 ORTHO05D000001 9.0e-06 54.3 39 71.8
SEGI_29823 Sequoiadendron giganteum HOM05D004362 ORTHO05D000001 9.0e-06 54.3 37 73.0


User provided reference genes

Program Settings