Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SEGI_31856 Sequoiadendron giganteum HOM05D001873 ORTHO05D019324 1.3e-52 209.5 114 100.0
SEGI_38648 Sequoiadendron giganteum HOM05D001873 ORTHO05D019324 5.8e-24 114.4 61 96.7
SEGI_18365 Sequoiadendron giganteum HOM05D001873 ORTHO05D019324 6.4e-23 110.9 58 94.8
SEGI_21643 Sequoiadendron giganteum HOM05D001873 ORTHO05D019324 3.0e-20 102.1 57 89.5
SEGI_08304 Sequoiadendron giganteum HOM05D001873 ORTHO05D001976 6.2e-18 94.4 88 63.6
SEGI_06916 Sequoiadendron giganteum HOM05D001873 ORTHO05D019324 4.6e-13 78.2 40 97.5
SEGI_24831 Sequoiadendron giganteum HOM05D000971 ORTHO05D384263 6.7e-12 74.3 43 93.0
Pp3c17_1210 Physcomitrium patens HOM05D001873 ORTHO05D001976 2.1e-10 69.3 64 56.2
Gohir.D11G105000 Gossypium hirsutum HOM05D001873 ORTHO05D001976 3.6e-10 68.6 86 47.7
Gorai.007G112300 Gossypium raimondii HOM05D001873 ORTHO05D001976 3.6e-10 68.6 86 47.7
Duzib138G1613 Durio zibethinus HOM05D001873 ORTHO05D001976 6.2e-10 67.8 62 51.6
Glyma.19G259200 Glycine max HOM05D001873 ORTHO05D001976 2.4e-09 65.9 62 53.2
TWI59G0118 Tripterygium wilfordii HOM05D001873 ORTHO05D001976 2.4e-09 65.9 68 50.0
Glyma.03G260500 Glycine max HOM05D001873 ORTHO05D001976 3.1e-09 65.5 62 53.2
Lj1g0019303 Lotus japonicus HOM05D001873 ORTHO05D001976 3.1e-09 65.5 74 48.6
Mapoly0019s0028 Marchantia polymorpha HOM05D001873 ORTHO05D001976 3.1e-09 65.5 87 48.3
Psat3g000800 Pisum sativum HOM05D001873 ORTHO05D001976 3.1e-09 65.5 62 53.2
COL.COLO4_06212 Corchorus olitorius HOM05D001873 ORTHO05D001976 4.0e-09 65.1 52 57.7
TWI23G0723 Tripterygium wilfordii HOM05D001873 ORTHO05D001976 4.0e-09 65.1 68 50.0
Duzib133G0410 Durio zibethinus HOM05D001873 ORTHO05D001976 5.3e-09 64.7 86 47.7
Pp3c12_1580 Physcomitrium patens HOM05D001873 ORTHO05D001976 6.9e-09 64.3 110 43.6
Thecc.01G334600 Theobroma cacao HOM05D001873 ORTHO05D001976 9.0e-09 63.9 62 50.0
AT4G00830 Arabidopsis thaliana HOM05D001873 ORTHO05D001976 1.2e-08 63.5 61 49.2
FvH4_7g17500 Fragaria vesca HOM05D001873 ORTHO05D001976 1.5e-08 63.2 75 46.7
FAN03G0545 Fragaria x ananassa HOM05D001873 ORTHO05D001976 1.5e-08 63.2 75 46.7
FAN06G0890 Fragaria x ananassa HOM05D001873 ORTHO05D001976 1.5e-08 63.2 75 46.7
FAN06G3782 Fragaria x ananassa HOM05D001873 ORTHO05D001976 1.5e-08 63.2 75 46.7
FAN10G4233 Fragaria x ananassa HOM05D001873 ORTHO05D001976 1.5e-08 63.2 75 46.7
Manes.05G017400 Manihot esculenta HOM05D001873 ORTHO05D001976 1.5e-08 63.2 84 47.6
MBI19_g24051_MAGBIO Magnolia biondii HOM05D000003 ORTHO05D000004 2.0e-08 62.8 69 52.2
Phvul.009G257300 Phaseolus vulgaris HOM05D001873 ORTHO05D001976 2.0e-08 62.8 62 51.6
Potri.006G212400 Populus trichocarpa HOM05D001873 ORTHO05D001976 2.6e-08 62.4 89 43.8
Sc23g0001860 Simmondsia chinensis HOM05D001873 ORTHO05D001976 2.6e-08 62.4 75 48.0
arahy.Tifrunner.gnm1.ann1.9M4IQN Arachis hypogaea HOM05D001873 ORTHO05D001976 3.4e-08 62.0 87 46.0
arahy.Tifrunner.gnm1.ann1.GN1APU Arachis hypogaea HOM05D001873 ORTHO05D001976 3.4e-08 62.0 87 46.0
FAN10G4319 Fragaria x ananassa HOM05D001873 ORTHO05D001976 3.4e-08 62.0 78 48.7
Gohir.A11G100300 Gossypium hirsutum HOM05D001873 ORTHO05D001976 3.4e-08 62.0 86 44.2
Gohir.D08G015700 Gossypium hirsutum HOM05D001873 ORTHO05D001976 3.4e-08 62.0 129 40.3
Gorai.004G010000 Gossypium raimondii HOM05D001873 ORTHO05D001976 3.4e-08 62.0 129 40.3
Manes.04G003300 Manihot esculenta HOM05D001873 ORTHO05D001976 3.4e-08 62.0 71 50.7
Thecc.09G282600 Theobroma cacao HOM05D001873 ORTHO05D001976 3.4e-08 62.0 82 43.9
arahy.Tifrunner.gnm1.ann1.NFP3PK Arachis hypogaea HOM05D001873 ORTHO05D001976 4.5e-08 61.6 52 55.8
arahy.Tifrunner.gnm1.ann1.RLQ8YA Arachis hypogaea HOM05D001873 ORTHO05D001976 4.5e-08 61.6 52 55.8
CBR_g66684 Chara braunii HOM05D001873 ORTHO05D001976 4.5e-08 61.6 47 68.1
HanXRQChr16g0524561 Helianthus annuus HOM05D001873 ORTHO05D001976 4.5e-08 61.6 71 46.5
Rhsim01G0179100 Rhododendron simsii HOM05D001873 ORTHO05D001976 4.5e-08 61.6 91 47.3
Sabra02G0135400 Salix brachista HOM05D001873 ORTHO05D001976 4.5e-08 61.6 62 50.0
Sabra14G0076800 Salix brachista HOM05D001873 ORTHO05D001976 4.5e-08 61.6 62 50.0
ATR0776G050 Amborella trichopoda HOM05D001873 ORTHO05D001976 5.8e-08 61.2 48 58.3
VMungo1309G1785 Vigna mungo HOM05D001873 ORTHO05D001976 5.8e-08 61.2 60 51.7
Cfa003747 Carpinus fangiana HOM05D001873 ORTHO05D001976 7.6e-08 60.8 74 47.3
ClCG02G022250 Citrullus lanatus HOM05D001873 ORTHO05D001976 7.6e-08 60.8 66 50.0
MELO3C014502.2 Cucumis melo HOM05D001873 ORTHO05D001976 7.6e-08 60.8 67 49.3
Gohir.A08G005300 Gossypium hirsutum HOM05D001873 ORTHO05D001976 7.6e-08 60.8 129 39.5
Manes.01G240900 Manihot esculenta HOM05D001873 ORTHO05D001976 7.6e-08 60.8 72 45.8
QL08p046833 Quercus lobata HOM05D001873 ORTHO05D001976 7.6e-08 60.8 64 51.6
CDE08G1064 Ceratophyllum demersum HOM05D001873 ORTHO05D001976 9.9e-08 60.5 58 53.4
Lalb_Chr04g0254221 Lupinus albus HOM05D001873 ORTHO05D001976 9.9e-08 60.5 67 46.3
vmacro12650 Vaccinium macrocarpon HOM05D001873 ORTHO05D001976 9.9e-08 60.5 91 46.2
EL10Ac9g20794 Beta vulgaris HOM05D001873 ORTHO05D001976 1.3e-07 60.1 74 48.6
Cpa.g.sc141.13 Carica papaya HOM05D001873 ORTHO05D001976 1.3e-07 60.1 94 47.9
Duzib150G1484 Durio zibethinus HOM05D001873 ORTHO05D001976 1.3e-07 60.1 85 49.4
Lalb_Chr18g0044681 Lupinus albus HOM05D001873 ORTHO05D001976 1.3e-07 60.1 52 55.8
PSO135G0173 Papaver somniferum HOM05D001873 ORTHO05D001976 1.3e-07 60.1 46 58.7
PSO384G0842 Papaver somniferum HOM05D001873 ORTHO05D001976 1.3e-07 60.1 46 58.7
Potri.002G178200 Populus trichocarpa HOM05D001873 ORTHO05D001976 1.3e-07 60.1 64 50.0
THA.LOC104801355 Tarenaya hassleriana HOM05D001873 ORTHO05D001976 1.3e-07 60.1 42 59.5
Cpa.g.sc5.9 Carica papaya HOM05D001873 ORTHO05D001976 1.7e-07 59.7 36 69.4
Ciclev10031378m.g Citrus clementina HOM05D001873 ORTHO05D001976 1.7e-07 59.7 74 44.6
MD07G1157800 Malus domestica HOM05D001873 ORTHO05D001976 1.7e-07 59.7 102 44.1
SMO119G0473 Selaginella moellendorffii HOM05D001873 ORTHO05D001976 1.7e-07 59.7 86 46.5
TAR633G2108 Trochodendron aralioides HOM05D001873 ORTHO05D001976 1.7e-07 59.7 36 69.4
GSVIVG01027425001 Vitis vinifera HOM05D001873 ORTHO05D001976 1.7e-07 59.7 77 48.1
BcaC04g24100 Brassica carinata HOM05D001873 ORTHO05D001976 2.2e-07 59.3 89 42.7
AUR62038886 Chenopodium quinoa HOM05D001873 ORTHO05D001976 2.2e-07 59.3 83 44.6
Cc01_g09070 Coffea canephora HOM05D001873 ORTHO05D001976 2.2e-07 59.3 87 49.4
ECA238G4484 Erigeron canadensis HOM05D001873 ORTHO05D001976 2.2e-07 59.3 77 49.4
Nn2g14174 Nelumbo nucifera HOM05D001873 ORTHO05D001976 2.2e-07 59.3 53 56.6
PSO339G2576 Papaver somniferum HOM05D001873 ORTHO05D001976 2.2e-07 59.3 65 49.2
PSO384G1112 Papaver somniferum HOM05D001873 ORTHO05D001976 2.2e-07 59.3 65 49.2
CsaV3_3G007650 Cucumis sativus L. HOM05D001873 ORTHO05D001976 2.9e-07 58.9 59 49.2
Gohir.D05G083400 Gossypium hirsutum HOM05D001873 ORTHO05D001976 2.9e-07 58.9 82 45.1
MD12G1025200 Malus domestica HOM05D001873 ORTHO05D001976 2.9e-07 58.9 63 57.1
Peaxi162Scf00087g00043 Petunia axillaris HOM05D001873 ORTHO05D001976 2.9e-07 58.9 80 46.2
PGR142G1419 Punica granatum HOM05D001873 ORTHO05D001976 2.9e-07 58.9 68 48.5
Sed0003866 Sechium edule HOM05D001873 ORTHO05D001976 2.9e-07 58.9 67 47.8
Sed0005231 Sechium edule HOM05D001873 ORTHO05D001976 2.9e-07 58.9 94 45.7
TAR374G1666 Trochodendron aralioides HOM05D001873 ORTHO05D001976 2.9e-07 58.9 57 52.6
MELO3C005985.2 Cucumis melo HOM05D001873 ORTHO05D001976 3.8e-07 58.5 59 49.2
Migut.B01919 Erythranthe guttata HOM05D001873 ORTHO05D001976 3.8e-07 58.5 65 52.3
Gorai.009G085100 Gossypium raimondii HOM05D001873 ORTHO05D001976 3.8e-07 58.5 82 43.9
Lj7C495G5 Lonicera japonica HOM05D001873 ORTHO05D001976 3.8e-07 58.5 74 48.6
QL07p038668 Quercus lobata HOM05D001873 ORTHO05D001976 3.8e-07 58.5 69 52.2
Sed0012361 Sechium edule HOM05D001873 ORTHO05D001976 3.8e-07 58.5 66 47.0
Hund16746 Selenicereus undatus HOM05D001873 ORTHO05D001976 3.8e-07 58.5 89 46.1
TAR633G0055 Trochodendron aralioides HOM05D001873 ORTHO05D001976 3.8e-07 58.5 33 75.8
CARHR249500 Cardamine hirsuta HOM05D001873 ORTHO05D001976 4.9e-07 58.2 76 43.4
AUR62042473 Chenopodium quinoa HOM05D001873 ORTHO05D001976 4.9e-07 58.2 83 43.4
Dinv32639 Davidia involucrata HOM05D001873 ORTHO05D001976 4.9e-07 58.2 76 48.7
Manes.09G054400 Manihot esculenta HOM05D001873 ORTHO05D001976 4.9e-07 58.2 36 66.7
RcHm_v2.0_Chr1g0360911 Rosa chinensis HOM05D001873 ORTHO05D001976 4.9e-07 58.2 106 43.4
Atru.chr5.754 Acer truncatum HOM05D001873 ORTHO05D001976 6.4e-07 57.8 87 43.7
Ah.01g015310 Amaranthus hybridus HOM05D001873 ORTHO05D001976 6.4e-07 57.8 99 44.4
CsaV3_6G038380 Cucumis sativus L. HOM05D001873 ORTHO05D001976 6.4e-07 57.8 83 47.0
Medtr7g118120 Medicago truncatula HOM05D001873 ORTHO05D001976 6.4e-07 57.8 63 54.0
Phvul.001G190900 Phaseolus vulgaris HOM05D001873 ORTHO05D001976 6.4e-07 57.8 36 66.7
VMungo1383G3019 Vigna mungo HOM05D001873 ORTHO05D001976 6.4e-07 57.8 44 59.1
Haze_23369 Corylus avellana HOM05D004510 ORTHO05D005302 8.4e-07 57.4 36 63.9
Lalb_Chr17g0342961 Lupinus albus HOM05D001873 ORTHO05D001976 8.4e-07 57.4 93 41.9
MD14G1023900 Malus domestica HOM05D001873 ORTHO05D001976 8.4e-07 57.4 63 50.8
Potri.016G079200 Populus trichocarpa HOM05D001873 ORTHO05D001976 8.4e-07 57.4 96 44.8
Sp6g01290 Schrenkiella parvula HOM05D001873 ORTHO05D001976 8.4e-07 57.4 76 44.7
Sed0005634 Sechium edule HOM05D001873 ORTHO05D001976 8.4e-07 57.4 94 43.6
Aqoxy2G01132 Aquilegia oxysepala HOM05D001873 ORTHO05D001976 1.1e-06 57.0 65 49.2
Haze_23362 Corylus avellana HOM05D001873 ORTHO05D001976 1.1e-06 57.0 39 61.5
Eucgr.B03847 Eucalyptus grandis HOM05D001873 ORTHO05D001976 1.1e-06 57.0 84 45.2
FvH4_6g18900 Fragaria vesca HOM05D001873 ORTHO05D001976 1.1e-06 57.0 99 40.4
Gohir.A01G205600 Gossypium hirsutum HOM05D001873 ORTHO05D001976 1.1e-06 57.0 66 48.5
Potri.014G104500 Populus trichocarpa HOM05D001873 ORTHO05D001976 1.1e-06 57.0 87 43.7
Prupe.7G108900 Prunus persica HOM05D001873 ORTHO05D001976 1.1e-06 57.0 64 51.6
CSS0021983 Camellia sinensis var. sinensis HOM05D001873 ORTHO05D001976 1.4e-06 56.6 92 40.2
CiPaw.10G010600 Carya illinoinensis HOM05D001873 ORTHO05D001976 1.4e-06 56.6 110 37.3
Eucgr.D02648 Eucalyptus grandis HOM05D001873 ORTHO05D001976 1.4e-06 56.6 103 40.8
MD01G1087600 Malus domestica HOM05D001873 ORTHO05D001976 1.4e-06 56.6 99 42.4
Sabra06G0163500 Salix brachista HOM05D001873 ORTHO05D001976 1.4e-06 56.6 69 49.3
AL6G52630 Arabidopsis lyrata HOM05D001873 ORTHO05D001976 1.9e-06 56.2 89 41.6
Carub.0006s3585 Capsella rubella HOM05D001873 ORTHO05D001976 1.9e-06 56.2 85 42.4
Gohir.A04G062100 Gossypium hirsutum HOM05D001873 ORTHO05D001976 1.9e-06 56.2 65 49.2
Gorai.009G401300 Gossypium raimondii HOM05D001873 ORTHO05D001976 1.9e-06 56.2 65 49.2
TPR.G40134 Trifolium pratense HOM05D001873 ORTHO05D019324 1.9e-06 56.2 68 52.9
ATR0579G100 Amborella trichopoda HOM05D001873 ORTHO05D001976 3.2e-06 55.5 98 40.8
Glyma.03G196700 Glycine max HOM05D001873 ORTHO05D001976 3.2e-06 55.5 78 42.3
Gohir.D01G195100 Gossypium hirsutum HOM05D001873 ORTHO05D001976 3.2e-06 55.5 66 47.0
Gorai.002G239200 Gossypium raimondii HOM05D001873 ORTHO05D001976 3.2e-06 55.5 66 47.0
Os11g0250000 Oryza sativa ssp. japonica HOM05D001873 ORTHO05D001976 3.2e-06 55.5 68 50.0
Thecc.05G090400 Theobroma cacao HOM05D001873 ORTHO05D001976 3.2e-06 55.5 65 49.2
Zm00001eb173880 Zea mays HOM05D001873 ORTHO05D001976 3.2e-06 55.5 57 50.9
CSS0042702 Camellia sinensis var. sinensis HOM05D001873 ORTHO05D001976 4.2e-06 55.1 69 47.8
Duzib106G1456 Durio zibethinus HOM05D001873 ORTHO05D001976 4.2e-06 55.1 64 50.0
ECA234G2923 Erigeron canadensis HOM05D001873 ORTHO05D001976 4.2e-06 55.1 93 41.9
Potri.004G201900 Populus trichocarpa HOM05D001873 ORTHO05D001976 4.2e-06 55.1 73 43.8
Actinidia28091 Actinidia chinensis HOM05D001873 ORTHO05D001976 5.5e-06 54.7 79 44.3
C09p01060 Brassica napus HOM05D001873 ORTHO05D001976 5.5e-06 54.7 90 42.2
BolC9t53039H Brassica oleracea HOM05D001873 ORTHO05D001976 5.5e-06 54.7 90 42.2
CDE08G0652 Ceratophyllum demersum HOM05D001873 ORTHO05D001976 5.5e-06 54.7 58 50.0
Ca_09540_v3 Cicer arietinum L. HOM05D001873 ORTHO05D001976 5.5e-06 54.7 53 52.8
Gohir.A05G080400 Gossypium hirsutum HOM05D001873 ORTHO05D001976 5.5e-06 54.7 93 41.9
Oeu064428.1 Olea europaea HOM05D001873 ORTHO05D001976 5.5e-06 54.7 87 47.1
PGR031G3901 Punica granatum HOM05D001873 ORTHO05D001976 5.5e-06 54.7 95 43.2
Aa31LG10G7710 Aethionema arabicum HOM05D001873 ORTHO05D001976 7.1e-06 54.3 74 44.6
Aa31LG5G1120 Aethionema arabicum HOM05D001873 ORTHO05D001976 7.1e-06 54.3 62 48.4
CiPaw.14G099700 Carya illinoinensis HOM05D001873 ORTHO05D001976 7.1e-06 54.3 104 45.2
Ciclev10019942m.g Citrus clementina HOM05D001873 ORTHO05D001976 7.1e-06 54.3 54 51.9
QL01p012181 Quercus lobata HOM05D001873 ORTHO05D001976 7.1e-06 54.3 65 43.1
BcaB01g02311 Brassica carinata HOM05D001873 ORTHO05D001976 9.3e-06 53.9 85 40.0
Duzib170G0866 Durio zibethinus HOM05D001873 ORTHO05D001976 9.3e-06 53.9 122 36.1
Lsat_1_v5_gn_2_119400 Lactuca sativa HOM05D001873 ORTHO05D001976 9.3e-06 53.9 33 69.7
HPP92_001542 Vanilla planifolia HOM05D001873 ORTHO05D001976 9.3e-06 53.9 67 49.3


User provided reference genes

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