Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SEGI_31815 Sequoiadendron giganteum HOM05D005183 ORTHO05D006684 1.1e-181 639.8 328 100.0
SEGI_13997 Sequoiadendron giganteum HOM05D005183 ORTHO05D006684 8.5e-177 623.6 326 97.5
Nn4g24833 Nelumbo nucifera HOM05D005183 ORTHO05D006684 4.6e-122 441.8 312 70.2
Aqoxy2G03309 Aquilegia oxysepala HOM05D005183 ORTHO05D006684 1.0e-121 440.7 311 71.1
Nn2g14627 Nelumbo nucifera HOM05D005183 ORTHO05D006684 1.0e-121 440.7 312 70.2
TAR371G0749 Trochodendron aralioides HOM05D005183 ORTHO05D006684 1.1e-120 437.2 328 68.3
ATR0559G171 Amborella trichopoda HOM05D005183 ORTHO05D006684 1.9e-120 436.4 296 70.6
Dinv19828 Davidia involucrata HOM05D005183 ORTHO05D006684 3.6e-119 432.2 314 68.8
GSVIVG01033782001 Vitis vinifera HOM05D005183 ORTHO05D006684 3.4e-117 425.6 316 67.4
Ah.09g233440 Amaranthus hybridus HOM05D005183 ORTHO05D006684 1.1e-115 420.6 311 66.2
CSS0041546 Camellia sinensis var. sinensis HOM05D005183 ORTHO05D006684 1.4e-115 420.2 308 66.9
Oeu040539.1 Olea europaea HOM05D005183 ORTHO05D006684 3.2e-115 419.1 314 67.2
CDE08G0191 Ceratophyllum demersum HOM05D005183 ORTHO05D006684 4.1e-115 418.7 312 66.3
Hund17099 Selenicereus undatus HOM05D005183 ORTHO05D006684 4.1e-115 418.7 298 69.5
Gorai.002G242600 Gossypium raimondii HOM05D005183 ORTHO05D006684 5.4e-115 418.3 316 66.1
PGR004G1465 Punica granatum HOM05D005183 ORTHO05D006684 5.4e-115 418.3 298 68.1
Hund27408 Selenicereus undatus HOM05D005183 ORTHO05D006684 7.1e-115 417.9 320 65.0
Gohir.A01G209300 Gossypium hirsutum HOM05D005183 ORTHO05D006684 9.2e-115 417.5 316 66.1
Hma1.2p1_0611F.1_g188660 Hydrangea macrophylla HOM05D005183 ORTHO05D006684 9.2e-115 417.5 315 66.0
Manes.08G020900 Manihot esculenta HOM05D005183 ORTHO05D006684 9.2e-115 417.5 298 68.8
Eucgr.A01543 Eucalyptus grandis HOM05D005183 ORTHO05D006684 1.6e-114 416.8 312 65.7
Gohir.D01G198400 Gossypium hirsutum HOM05D005183 ORTHO05D006684 4.6e-114 415.2 316 65.5
COL.COLO4_29815 Corchorus olitorius HOM05D005183 ORTHO05D006684 6.0e-114 414.8 316 65.2
PGSC0003DMG400028174 Solanum tuberosum HOM05D005183 ORTHO05D006684 1.3e-113 413.7 315 65.7
CAN.G1138.15 Capsicum annuum HOM05D005183 ORTHO05D006684 1.7e-113 413.3 298 68.1
AUR62013753 Chenopodium quinoa HOM05D005183 ORTHO05D006684 2.3e-113 412.9 320 62.8
Pp3c4_19370 Physcomitrium patens HOM05D005183 ORTHO05D006684 2.3e-113 412.9 324 65.1
Actinidia10400 Actinidia chinensis HOM05D005183 ORTHO05D006684 3.0e-113 412.5 308 64.6
CiPaw.09G008700 Carya illinoinensis HOM05D005183 ORTHO05D006684 3.0e-113 412.5 314 64.0
AUR62023398 Chenopodium quinoa HOM05D005183 ORTHO05D006684 3.0e-113 412.5 326 63.2
EL10Ac1g00750 Beta vulgaris HOM05D005183 ORTHO05D006684 3.9e-113 412.1 298 68.1
Lalb_Chr06g0173361 Lupinus albus HOM05D005183 ORTHO05D006684 6.6e-113 411.4 298 68.8
QL07p040540 Quercus lobata HOM05D005183 ORTHO05D006684 8.6e-113 411.0 317 64.4
Sc20g0006050 Simmondsia chinensis HOM05D005183 ORTHO05D006684 8.6e-113 411.0 312 66.7
Thecc.05G081000 Theobroma cacao HOM05D005183 ORTHO05D006684 8.6e-113 411.0 316 64.6
Sopen10g033080 Solanum pennellii HOM05D005183 ORTHO05D006684 1.1e-112 410.6 315 65.1
Duzib128G1222 Durio zibethinus HOM05D005183 ORTHO05D006684 1.5e-112 410.2 316 64.2
Solyc10g083600.2 Solanum lycopersicum HOM05D005183 ORTHO05D006684 1.9e-112 409.8 315 65.1
Cfa016373 Carpinus fangiana HOM05D005183 ORTHO05D006684 2.5e-112 409.5 317 64.4
Oeu013577.1 Olea europaea HOM05D005183 ORTHO05D006684 2.5e-112 409.5 312 64.7
vmacro17863 Vaccinium macrocarpon HOM05D005183 ORTHO05D006684 2.5e-112 409.5 335 62.7
Nitab4.5_0002715g0140 Nicotiana tabacum HOM05D005183 ORTHO05D006684 4.3e-112 408.7 296 68.6
Peaxi162Scf00110g02022 Petunia axillaris HOM05D005183 ORTHO05D006684 1.2e-111 407.1 312 65.4
Cc09_g05380 Coffea canephora HOM05D005183 ORTHO05D006684 1.6e-111 406.8 315 65.4
THA.LOC104808666 Tarenaya hassleriana HOM05D005183 ORTHO05D006684 1.6e-111 406.8 298 66.4
Cfa008157 Carpinus fangiana HOM05D005183 ORTHO05D006684 2.1e-111 406.4 317 64.4
Ca_06436_v3 Cicer arietinum L. HOM05D005183 ORTHO05D006684 2.8e-111 406.0 314 64.0
DCAR_010653 Daucus carota HOM05D005183 ORTHO05D006684 3.6e-111 405.6 314 64.6
DCAR_029401 Daucus carota HOM05D005183 ORTHO05D006684 4.7e-111 405.2 314 65.0
MELO3C018272.2 Cucumis melo HOM05D005183 ORTHO05D006684 1.4e-110 403.7 298 66.4
HanXRQChr02g0051911 Helianthus annuus HOM05D005183 ORTHO05D006684 1.4e-110 403.7 315 64.8
SGA_v2.0_scaffold75G24795 Striga asiatica HOM05D005183 ORTHO05D006684 1.4e-110 403.7 298 66.1
ClCG10G019350 Citrullus lanatus HOM05D005183 ORTHO05D006684 1.8e-110 403.3 298 66.8
Ciclev10028864m.g Citrus clementina HOM05D005183 ORTHO05D006684 1.8e-110 403.3 316 63.6
Sed0001030 Sechium edule HOM05D005183 ORTHO05D006684 1.8e-110 403.3 298 67.1
Psat6g078200 Pisum sativum HOM05D005183 ORTHO05D006684 2.3e-110 402.9 314 63.1
Potri.015G088700 Populus trichocarpa HOM05D005183 ORTHO05D006684 2.3e-110 402.9 314 66.6
Lj5g0003294 Lotus japonicus HOM05D005183 ORTHO05D006684 3.1e-110 402.5 298 66.1
Haze_00122 Corylus avellana HOM05D005183 ORTHO05D006684 5.2e-110 401.7 344 60.2
HPP92_026689 Vanilla planifolia HOM05D005183 ORTHO05D006684 5.2e-110 401.7 298 67.1
CsaV3_3G036840 Cucumis sativus L. HOM05D005183 ORTHO05D006684 6.8e-110 401.4 298 65.8
PSO478G0399 Papaver somniferum HOM05D005183 ORTHO05D006684 2.6e-109 399.4 325 63.1
Lsat_1_v5_gn_4_35140 Lactuca sativa HOM05D005183 ORTHO05D006684 3.4e-109 399.1 295 66.4
VMungo0720G1906 Vigna mungo HOM05D005183 ORTHO05D006684 5.8e-109 398.3 328 62.2
MSTRG.5807 Avicennia marina HOM05D005183 ORTHO05D006684 7.6e-109 397.9 315 63.2
HPP92_017999 Vanilla planifolia HOM05D005183 ORTHO05D006684 7.6e-109 397.9 293 67.2
BcaC06g35547 Brassica carinata HOM05D005183 ORTHO05D006684 9.9e-109 397.5 317 65.0
A07p08780 Brassica napus HOM05D005183 ORTHO05D006684 9.9e-109 397.5 317 65.0
C07p13620 Brassica napus HOM05D005183 ORTHO05D006684 9.9e-109 397.5 317 65.0
BolC7t41857H Brassica oleracea HOM05D005183 ORTHO05D006684 9.9e-109 397.5 317 65.0
Migut.J00983 Erythranthe guttata HOM05D005183 ORTHO05D006684 9.9e-109 397.5 315 63.8
PSO017G1745 Papaver somniferum HOM05D005183 ORTHO05D006684 9.9e-109 397.5 325 63.1
Zm00001eb255650 Zea mays HOM05D005183 ORTHO05D006684 9.9e-109 397.5 306 65.7
Aa31LG8G10050 Aethionema arabicum HOM05D005183 ORTHO05D006684 1.3e-108 397.1 326 63.5
BcaB06g26517 Brassica carinata HOM05D005183 ORTHO05D006684 1.3e-108 397.1 317 64.7
BraA07t28669Z Brassica rapa HOM05D005183 ORTHO05D006684 1.3e-108 397.1 317 65.0
Cpa.g.sc111.25 Carica papaya HOM05D005183 ORTHO05D006684 1.3e-108 397.1 316 63.9
TPR.G28986 Trifolium pratense HOM05D005183 ORTHO05D006684 1.3e-108 397.1 307 63.5
HanXRQChr17g0545251 Helianthus annuus HOM05D005183 ORTHO05D006684 1.7e-108 396.7 308 65.6
Phvul.007G223300 Phaseolus vulgaris HOM05D005183 ORTHO05D006684 1.7e-108 396.7 316 63.0
BolC1t03963H Brassica oleracea HOM05D005183 ORTHO05D006684 2.2e-108 396.4 297 67.3
SGA_v2.0_scaffold40G15402 Striga asiatica HOM05D005183 ORTHO05D006684 2.2e-108 396.4 328 62.2
A01p31440 Brassica napus HOM05D005183 ORTHO05D006684 3.7e-108 395.6 297 67.0
BraA01t03270Z Brassica rapa HOM05D005183 ORTHO05D006684 3.7e-108 395.6 297 67.0
Zm00001eb292270 Zea mays HOM05D005183 ORTHO05D006684 3.7e-108 395.6 306 65.4
C01p40070 Brassica napus HOM05D005183 ORTHO05D006684 4.9e-108 395.2 297 67.0
ECA233G2114 Erigeron canadensis HOM05D005183 ORTHO05D006684 4.9e-108 395.2 287 68.6
Os01g0513800 Oryza sativa ssp. japonica HOM05D005183 ORTHO05D006684 8.4e-108 394.4 309 65.0
Prupe.7G117100 Prunus persica HOM05D005183 ORTHO05D006684 1.4e-107 393.7 326 62.3
Migut.N00918 Erythranthe guttata HOM05D005183 ORTHO05D006684 1.9e-107 393.3 314 62.7
TWI74G1514 Tripterygium wilfordii HOM05D005183 ORTHO05D006684 2.4e-107 392.9 295 66.8
unitig_0.g1556 Utricularia gibba HOM05D005183 ORTHO05D006684 3.2e-107 392.5 314 63.1
Glyma.13G151300 Glycine max HOM05D005183 ORTHO05D006684 4.1e-107 392.1 312 63.5
Thhalv10021169m.g Eutrema salsugineum HOM05D005183 ORTHO05D006684 5.4e-107 391.7 316 64.2
AL3G38300 Arabidopsis lyrata HOM05D005183 ORTHO05D006684 9.2e-107 391.0 298 65.4
BcaB04g20435 Brassica carinata HOM05D005183 ORTHO05D006684 9.2e-107 391.0 317 64.0
Medtr1g061160 Medicago truncatula HOM05D005183 ORTHO05D006684 1.2e-106 390.6 320 62.8
Glyma.10G066200 Glycine max HOM05D005183 ORTHO05D006684 1.6e-106 390.2 312 63.1
Lj3A998T32 Lonicera japonica HOM05D005183 ORTHO05D006684 2.7e-106 389.4 309 64.4
MD12G1018000 Malus domestica HOM05D005183 ORTHO05D006684 3.5e-106 389.0 325 61.8
SMO367G0957 Selaginella moellendorffii HOM05D005183 ORTHO05D006684 4.6e-106 388.7 307 62.2
Carub.0003s2385 Capsella rubella HOM05D005183 ORTHO05D006684 6.0e-106 388.3 297 64.3
AT3G23620 Arabidopsis thaliana HOM05D005183 ORTHO05D006684 1.7e-105 386.7 298 64.4
Sp3g21310 Schrenkiella parvula HOM05D005183 ORTHO05D006684 1.7e-105 386.7 317 63.1
vmacro00782 Vaccinium macrocarpon HOM05D005183 ORTHO05D006684 2.3e-105 386.3 308 64.0
Nitab4.5_0005311g0010 Nicotiana tabacum HOM05D005183 ORTHO05D006684 3.9e-105 385.6 293 66.2
FvH4_6g17900 Fragaria vesca HOM05D005183 ORTHO05D006684 2.5e-104 382.9 338 59.8
FAN02G4090 Fragaria x ananassa HOM05D005183 ORTHO05D006684 2.5e-104 382.9 338 59.8
FAN14G3711 Fragaria x ananassa HOM05D005183 ORTHO05D006684 2.5e-104 382.9 338 59.8
Mapoly0098s0050 Marchantia polymorpha HOM05D005183 ORTHO05D006684 2.5e-104 382.9 327 59.3
TPR.G5686 Trifolium pratense HOM05D005183 ORTHO05D006684 4.3e-104 382.1 292 64.4
RcHm_v2.0_Chr3g0472151 Rosa chinensis HOM05D005183 ORTHO05D006684 7.3e-104 381.3 338 60.4
FAN05G1411 Fragaria x ananassa HOM05D005183 ORTHO05D006684 2.1e-103 379.8 338 58.9
CARHR099550 Cardamine hirsuta HOM05D005183 ORTHO05D006684 6.2e-103 378.3 325 60.9
FAN09G1214 Fragaria x ananassa HOM05D005183 ORTHO05D006684 5.2e-102 375.2 348 58.0
Sabra15G0111600 Salix brachista HOM05D005183 ORTHO05D006684 1.2e-101 374.0 314 61.8
MD14G1016000 Malus domestica HOM05D005183 ORTHO05D006684 2.9e-100 369.4 288 63.2
THA.LOC104804771 Tarenaya hassleriana HOM05D005183 ORTHO05D006684 1.1e-99 367.5 259 67.6
FAN05G2784 Fragaria x ananassa HOM05D005183 ORTHO05D006684 8.7e-97 357.8 255 67.5
Pp3c26_6490 Physcomitrium patens HOM05D005183 ORTHO05D006684 1.3e-95 354.0 332 57.5
Atru.chr8.1634 Acer truncatum HOM05D005183 ORTHO05D006684 1.8e-94 350.1 272 62.1
AagrBONN_evm.TU.Sc2ySwM_344.5577 Anthoceros agrestis HOM05D005183 ORTHO05D006684 2.4e-94 349.7 307 56.7
CBR_g32692 Chara braunii HOM05D012618 ORTHO05D006684 7.9e-90 334.7 277 60.6
Gohir.A01G215950 Gossypium hirsutum HOM05D005183 ORTHO05D006684 3.9e-89 332.4 329 55.3
Rhsim11G0063800 Rhododendron simsii HOM05D005183 ORTHO05D006684 2.6e-85 319.7 308 55.8
Actinidia31290 Actinidia chinensis HOM05D005183 ORTHO05D006684 9.6e-80 301.2 308 52.3
Lalb_Chr02g0155161 Lupinus albus HOM05D005183 ORTHO05D006684 1.4e-78 297.4 205 70.2
Cre03.g197000 Chlamydomonas reinhardtii HOM05D005183 ORTHO05D006684 2.4e-78 296.6 305 50.5
Ca_28565_v3 Cicer arietinum L. HOM05D005183 ORTHO05D006684 1.6e-74 283.9 221 62.9
Nitab4.5_0000132g0170 Nicotiana tabacum HOM05D005183 ORTHO05D006684 1.6e-74 283.9 219 63.9
Haze_19538 Corylus avellana HOM05D005183 ORTHO05D006684 1.8e-70 270.4 278 51.1
MCO10G188 Micromonas commoda HOM05D005183 ORTHO05D006684 4.1e-70 269.2 294 50.0
PRCOL_00004600 Prasinoderma coloniale HOM05D005183 ORTHO05D006684 3.4e-61 239.6 295 44.4
Oeu037537.3 Olea europaea HOM05D005183 ORTHO05D006684 7.9e-58 228.4 250 52.0
HanXRQChr08g0223931 Helianthus annuus HOM05D005183 ORTHO05D006684 1.4e-38 164.5 144 61.8
Ca_11626_v3 Cicer arietinum L. HOM05D005183 ORTHO05D006684 5.7e-32 142.5 104 63.5
Os05g0506900 Oryza sativa ssp. japonica HOM05D005183 ORTHO05D006684 1.0e-25 121.7 96 65.6
Lalb_Chr02g0155171 Lupinus albus HOM05D005183 ORTHO05D006684 5.2e-25 119.4 95 63.2
MSTRG.19230 Avicennia marina HOM05D005183 ORTHO05D026969 9.2e-22 108.6 92 60.9
MELO3C028534.2 Cucumis melo HOM05D005183 ORTHO05D006684 8.0e-18 95.5 81 59.3
C04p39730 Brassica napus HOM05D005183 ORTHO05D026969 9.8e-16 88.6 92 53.3
BolC4t25545H Brassica oleracea HOM05D005183 ORTHO05D026969 9.8e-16 88.6 92 53.3
TAR371G0095 Trochodendron aralioides HOM05D005183 ORTHO05D045124 1.1e-14 85.1 110 47.3
BolC6t35803H Brassica oleracea HOM05D005183 ORTHO05D026969 6.6e-12 75.9 92 47.8


User provided reference genes

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