Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SEGI_31112 Sequoiadendron giganteum HOM05D006439 ORTHO05D008152 4.6e-186 654.4 337 100.0
TWI74G0883 Tripterygium wilfordii HOM05D006439 ORTHO05D008152 3.3e-35 153.3 319 34.2
QL07p039851 Quercus lobata HOM05D006439 ORTHO05D008152 1.7e-34 151.0 318 34.6
DCAR_009146 Daucus carota HOM05D006439 ORTHO05D008152 4.1e-33 146.4 276 33.7
CiPaw.09G010200 Carya illinoinensis HOM05D006439 ORTHO05D008152 2.0e-32 144.1 283 36.7
GSVIVG01033817001 Vitis vinifera HOM05D006439 ORTHO05D008152 2.0e-32 144.1 307 32.6
Lj1g0012097 Lotus japonicus HOM05D006439 ORTHO05D008152 3.4e-32 143.3 281 37.0
Prupe.7G115000 Prunus persica HOM05D006439 ORTHO05D008152 3.4e-32 143.3 292 35.3
Lalb_Chr01g0018261 Lupinus albus HOM05D006439 ORTHO05D008152 7.7e-32 142.1 313 36.4
HPP92_005462 Vanilla planifolia HOM05D006439 ORTHO05D008152 7.7e-32 142.1 301 33.2
Migut.L01768 Erythranthe guttata HOM05D006439 ORTHO05D008152 1.7e-31 141.0 260 37.7
MD12G1021400 Malus domestica HOM05D006439 ORTHO05D008152 2.9e-31 140.2 284 34.9
Gohir.A11G321900 Gossypium hirsutum HOM05D006439 ORTHO05D008152 6.5e-31 139.0 305 32.1
Gohir.D11G340900 Gossypium hirsutum HOM05D006439 ORTHO05D008152 3.2e-30 136.7 305 31.8
Gorai.007G371000 Gossypium raimondii HOM05D006439 ORTHO05D008152 3.2e-30 136.7 305 31.8
Actinidia31281 Actinidia chinensis HOM05D006439 ORTHO05D008152 4.2e-30 136.3 287 32.8
Phvul.001G188000 Phaseolus vulgaris HOM05D006439 ORTHO05D008152 2.1e-29 134.0 287 35.2
Cfa016567 Carpinus fangiana HOM05D006439 ORTHO05D008152 2.7e-29 133.7 289 34.6
Ciclev10011131m.g Citrus clementina HOM05D006439 ORTHO05D008152 2.7e-29 133.7 307 33.2
Psat3g034720 Pisum sativum HOM05D006439 ORTHO05D008152 7.9e-29 132.1 295 33.9
Zm00001eb139990 Zea mays HOM05D006439 ORTHO05D008152 7.9e-29 132.1 288 33.0
arahy.Tifrunner.gnm1.ann1.YQ8CLY Arachis hypogaea HOM05D006439 ORTHO05D008152 1.0e-28 131.7 272 35.3
FAN02G3052 Fragaria x ananassa HOM05D006439 ORTHO05D008152 1.4e-28 131.3 294 34.4
Lsat_1_v5_gn_6_69500 Lactuca sativa HOM05D006439 ORTHO05D008152 1.4e-28 131.3 255 35.7
Thecc.05G084500 Theobroma cacao HOM05D006439 ORTHO05D008152 1.4e-28 131.3 270 34.8
Aqoxy2G01352 Aquilegia oxysepala HOM05D006439 ORTHO05D008152 2.3e-28 130.6 267 34.1
RcHm_v2.0_Chr3g0472491 Rosa chinensis HOM05D006439 ORTHO05D008152 2.3e-28 130.6 294 34.0
VMungo1383G0775 Vigna mungo HOM05D006439 ORTHO05D008152 2.3e-28 130.6 283 35.3
Duzib093G0471 Durio zibethinus HOM05D006439 ORTHO05D008152 3.0e-28 130.2 312 30.1
Hma1.2p1_0232F.1_g097640 Hydrangea macrophylla HOM05D006439 ORTHO05D008152 6.7e-28 129.0 298 32.2
arahy.Tifrunner.gnm1.ann1.JQB9X3 Arachis hypogaea HOM05D006439 ORTHO05D008152 8.8e-28 128.6 271 33.9
FAN14G3294 Fragaria x ananassa HOM05D006439 ORTHO05D008152 1.1e-27 128.3 281 33.8
Sc07g0005420 Simmondsia chinensis HOM05D006439 ORTHO05D008152 4.4e-27 126.3 262 35.5
BcaB06g28933 Brassica carinata HOM05D006439 ORTHO05D008152 5.7e-27 125.9 307 30.3
BraA04t18280Z Brassica rapa HOM05D006439 ORTHO05D008152 5.7e-27 125.9 298 30.9
Sopen10g035010 Solanum pennellii HOM05D006439 ORTHO05D008152 9.7e-27 125.2 269 32.3
TPR.G19544 Trifolium pratense HOM05D006439 ORTHO05D008152 9.7e-27 125.2 295 33.9
Cc06_g05440 Coffea canephora HOM05D006439 ORTHO05D008152 1.3e-26 124.8 294 35.7
Nn2g14057 Nelumbo nucifera HOM05D006439 ORTHO05D008152 1.3e-26 124.8 256 33.2
SalBow5G0766 Salvia bowleyana HOM05D006439 ORTHO05D008152 1.3e-26 124.8 280 31.8
Solyc10g085600.2 Solanum lycopersicum HOM05D006439 ORTHO05D008152 1.3e-26 124.8 269 32.3
Medtr7g104170 Medicago truncatula HOM05D006439 ORTHO05D008152 1.7e-26 124.4 295 33.9
CAN.G1099.9 Capsicum annuum HOM05D006439 ORTHO05D008152 2.8e-26 123.6 272 32.7
Glyma.03G192900 Glycine max HOM05D006439 ORTHO05D008152 2.8e-26 123.6 265 35.5
HanXRQChr09g0247281 Helianthus annuus HOM05D006439 ORTHO05D008152 3.7e-26 123.2 271 33.2
CARHR130670 Cardamine hirsuta HOM05D006439 ORTHO05D008152 4.8e-26 122.9 295 33.2
Peaxi162Scf00146g00718 Petunia axillaris HOM05D006439 ORTHO05D008152 6.3e-26 122.5 311 31.5
A04p27880 Brassica napus HOM05D006439 ORTHO05D008152 1.1e-25 121.7 300 31.3
Nitab4.5_0000381g0240 Nicotiana tabacum HOM05D006439 ORTHO05D008152 1.4e-25 121.3 278 32.0
ECA233G3232 Erigeron canadensis HOM05D006439 ORTHO05D008152 1.8e-25 120.9 260 32.7
Os01g0968600 Oryza sativa ssp. japonica HOM05D006439 ORTHO05D008152 1.8e-25 120.9 288 31.9
Sp4g18660 Schrenkiella parvula HOM05D006439 ORTHO05D008152 1.8e-25 120.9 304 31.6
TAR623G1631 Trochodendron aralioides HOM05D006439 ORTHO05D008152 1.8e-25 120.9 201 40.3
vmacro08831 Vaccinium macrocarpon HOM05D006439 ORTHO05D008152 5.3e-25 119.4 341 30.2
Aa31LG5G21550 Aethionema arabicum HOM05D006439 ORTHO05D008152 7.0e-25 119.0 279 32.3
EL10Ac7g16960 Beta vulgaris HOM05D006439 ORTHO05D008152 9.1e-25 118.6 304 31.6
PGR142G3529 Punica granatum HOM05D006439 ORTHO05D008152 1.2e-24 118.2 297 31.3
THA.LOC104823488 Tarenaya hassleriana HOM05D006439 ORTHO05D008152 1.2e-24 118.2 281 32.0
BolC4t28018H Brassica oleracea HOM05D006439 ORTHO05D008152 2.0e-24 117.5 298 29.9
Oeu034357.1 Olea europaea HOM05D006439 ORTHO05D008152 2.6e-24 117.1 251 34.3
Thhalv10017885m.g Eutrema salsugineum HOM05D006439 ORTHO05D008152 7.7e-24 115.5 267 34.5
AUR62028585 Chenopodium quinoa HOM05D006439 ORTHO05D008152 1.5e-22 111.3 281 32.0
BcaC02g07604 Brassica carinata HOM05D006439 ORTHO05D008152 1.9e-22 110.9 298 28.9
SMO238G0046 Selaginella moellendorffii HOM05D006439 ORTHO05D008152 3.2e-22 110.2 255 31.0
AT2G36370 Arabidopsis thaliana HOM05D006439 ORTHO05D008152 9.4e-22 108.6 262 31.7
AL4G32530 Arabidopsis lyrata HOM05D006439 ORTHO05D008152 2.1e-21 107.5 290 30.0
Ah.15g091040 Amaranthus hybridus HOM05D006439 ORTHO05D008152 2.7e-21 107.1 300 30.0
PSO384G3820 Papaver somniferum HOM05D006439 ORTHO05D008152 4.7e-21 106.3 273 30.8
Haze_19565 Corylus avellana HOM05D006439 ORTHO05D008152 6.1e-21 105.9 291 30.9
Manes.08G022900 Manihot esculenta HOM05D006439 ORTHO05D008152 1.1e-19 101.7 286 31.8
SGA_v2.0_scaffold184G39949 Striga asiatica HOM05D006439 ORTHO05D008152 2.0e-19 100.9 294 30.3
PSO801G0048 Papaver somniferum HOM05D006439 ORTHO05D008152 4.8e-18 96.3 255 32.2
Atru.chr8.1601 Acer truncatum HOM05D006439 ORTHO05D008152 8.2e-18 95.5 143 42.0
Pp3c16_1040 Physcomitrium patens HOM05D006439 ORTHO05D008152 8.2e-18 95.5 258 30.6
Mapoly0116s0006 Marchantia polymorpha HOM05D006439 ORTHO05D008152 1.2e-16 91.7 278 28.8
Lj3A1001T29 Lonicera japonica HOM05D006439 ORTHO05D008152 4.5e-16 89.7 255 30.6
AagrBONN_evm.TU.Sc2ySwM_117.1948 Anthoceros agrestis HOM05D006439 ORTHO05D008152 1.0e-15 88.6 171 36.3
Ca_08981_v3 Cicer arietinum L. HOM05D006439 ORTHO05D008152 1.1e-14 85.1 296 28.0
Dinv21235 Davidia involucrata HOM05D000103 ORTHO05D008152 3.2e-14 83.6 130 42.3
FvH4_6g18170 Fragaria vesca HOM05D006439 ORTHO05D008152 2.7e-13 80.5 142 38.0
Cpa.g.sc5.59 Carica papaya HOM05D006439 ORTHO05D008152 1.4e-09 68.2 349 27.2
QL11p044009 Quercus lobata HOM05D006439 ORTHO05D009270 2.0e-08 64.3 138 32.6
Atru.chr8.1600 Acer truncatum HOM05D006439 ORTHO05D008152 8.5e-07 58.9 126 33.3
CSS0030357 Camellia sinensis var. sinensis HOM05D006439 ORTHO05D008152 8.5e-07 58.9 128 32.0
VMungo1127G2301 Vigna mungo HOM05D006439 ORTHO05D008152 8.5e-07 58.9 122 33.6


User provided reference genes

Program Settings