Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SEGI_31082 Sequoiadendron giganteum HOM05D003767 ORTHO05D004507 1.3e-293 1012.3 512 100.0
TAR365G0614 Trochodendron aralioides HOM05D003767 ORTHO05D004507 2.3e-43 181.0 137 62.8
CSS0007130 Camellia sinensis var. sinensis HOM05D003767 ORTHO05D004507 3.9e-43 180.3 137 62.0
Ca_09376_v3 Cicer arietinum L. HOM05D003767 ORTHO05D004507 1.9e-42 177.9 137 61.3
Atru.chr2.496 Acer truncatum HOM05D003767 ORTHO05D004507 3.3e-42 177.2 137 62.0
Ciclev10000728m.g Citrus clementina HOM05D003767 ORTHO05D004507 3.3e-42 177.2 137 62.0
Prupe.6G331000 Prunus persica HOM05D003767 ORTHO05D004507 3.3e-42 177.2 137 62.0
Manes.09G162900 Manihot esculenta HOM05D003767 ORTHO05D004507 5.6e-42 176.4 132 63.6
Psat3g009920 Pisum sativum HOM05D003767 ORTHO05D004507 7.3e-42 176.0 137 62.0
Potri.013G026800 Populus trichocarpa HOM05D003767 ORTHO05D004507 7.3e-42 176.0 133 62.4
MD04G1210100 Malus domestica HOM05D003767 ORTHO05D004507 9.5e-42 175.6 125 64.0
Aqoxy5G00559 Aquilegia oxysepala HOM05D003767 ORTHO05D004507 1.2e-41 175.3 133 62.4
Potri.005G038100 Populus trichocarpa HOM05D003767 ORTHO05D004507 1.6e-41 174.9 131 63.4
Eucgr.H04452 Eucalyptus grandis HOM05D003767 ORTHO05D004507 2.1e-41 174.5 137 64.2
Nn1g08367 Nelumbo nucifera HOM05D003767 ORTHO05D004507 2.1e-41 174.5 131 61.8
Phvul.006G094600 Phaseolus vulgaris HOM05D003767 ORTHO05D004507 2.1e-41 174.5 137 58.4
Gohir.A11G224810 Gossypium hirsutum HOM05D003767 ORTHO05D004507 2.8e-41 174.1 137 60.6
Gohir.D11G232600 Gossypium hirsutum HOM05D003767 ORTHO05D004507 2.8e-41 174.1 137 60.6
Gorai.003G066300 Gossypium raimondii HOM05D003767 ORTHO05D004507 2.8e-41 174.1 137 60.6
FvH4_6g05260 Fragaria vesca HOM05D003767 ORTHO05D004507 3.6e-41 173.7 137 60.6
Thecc.02G212900 Theobroma cacao HOM05D003767 ORTHO05D004507 3.6e-41 173.7 137 60.6
Oeu027914.1 Olea europaea HOM05D003767 ORTHO05D004507 6.2e-41 172.9 137 60.6
vmacro05036 Vaccinium macrocarpon HOM05D003767 ORTHO05D004507 6.2e-41 172.9 137 58.4
Actinidia23606 Actinidia chinensis HOM05D003767 ORTHO05D004507 1.1e-40 172.2 137 59.1
ECA238G2357 Erigeron canadensis HOM05D003767 ORTHO05D004507 1.1e-40 172.2 138 59.4
TPR.G33164 Trifolium pratense HOM05D003767 ORTHO05D004507 1.1e-40 172.2 137 60.6
Manes.08G123500 Manihot esculenta HOM05D003767 ORTHO05D004507 1.4e-40 171.8 137 59.1
Os11g0642800 Oryza sativa ssp. japonica HOM05D003767 ORTHO05D004507 1.4e-40 171.8 137 58.4
CANSAT54G0870 Cannabis sativa HOM05D003767 ORTHO05D004507 2.3e-40 171.0 137 59.1
Ca_09375_v3 Cicer arietinum L. HOM05D003767 ORTHO05D004507 2.3e-40 171.0 137 59.9
Medtr7g113890 Medicago truncatula HOM05D003767 ORTHO05D004507 2.3e-40 171.0 137 59.1
CiPaw.08G167300 Carya illinoinensis HOM05D003767 ORTHO05D004507 5.2e-40 169.9 137 58.4
Duzib147G0043 Durio zibethinus HOM05D003767 ORTHO05D004507 5.2e-40 169.9 137 59.9
Glyma.19G237800 Glycine max HOM05D003767 ORTHO05D004507 6.8e-40 169.5 137 56.9
GSVIVG01022056001 Vitis vinifera HOM05D003767 ORTHO05D004507 6.8e-40 169.5 156 53.8
Cfa006539 Carpinus fangiana HOM05D003767 ORTHO05D004507 8.9e-40 169.1 136 58.8
Sc09g0003380 Simmondsia chinensis HOM05D003767 ORTHO05D004507 1.2e-39 168.7 132 59.8
Hma1.2p1_0666F.1_g199390 Hydrangea macrophylla HOM05D003767 ORTHO05D004507 1.5e-39 168.3 137 58.4
PGR031G1040 Punica granatum HOM05D003767 ORTHO05D004507 1.5e-39 168.3 137 56.9
Zm00001eb137820 Zea mays HOM05D003767 ORTHO05D004507 1.5e-39 168.3 137 57.7
Glyma.19G237900 Glycine max HOM05D003767 ORTHO05D004507 2.0e-39 167.9 137 56.2
ECA238G1346 Erigeron canadensis HOM05D003767 ORTHO05D004507 2.6e-39 167.5 138 58.0
Os12g0263000 Oryza sativa ssp. japonica HOM05D003767 ORTHO05D004507 2.6e-39 167.5 137 63.5
DCAR_029443 Daucus carota HOM05D003767 ORTHO05D004507 3.4e-39 167.2 137 59.1
Migut.F01584 Erythranthe guttata HOM05D003767 ORTHO05D004507 3.4e-39 167.2 137 57.7
PSO210G1178 Papaver somniferum HOM05D003767 ORTHO05D004507 3.4e-39 167.2 137 57.7
PSO832G1867 Papaver somniferum HOM05D003767 ORTHO05D004507 3.4e-39 167.2 137 57.7
Os12g0528400 Oryza sativa ssp. japonica HOM05D003767 ORTHO05D004507 4.4e-39 166.8 133 59.4
Sp2g20600 Schrenkiella parvula HOM05D003767 ORTHO05D004507 4.4e-39 166.8 137 56.9
Aqoxy2G03198 Aquilegia oxysepala HOM05D003767 ORTHO05D004507 5.8e-39 166.4 149 55.7
Lj1g0009738 Lotus japonicus HOM05D003767 ORTHO05D004507 5.8e-39 166.4 137 58.4
Sed0026847 Sechium edule HOM05D003767 ORTHO05D004507 5.8e-39 166.4 137 56.2
Zm00001eb115490 Zea mays HOM05D003767 ORTHO05D004507 5.8e-39 166.4 137 56.9
Carub.0006s2517 Capsella rubella HOM05D003767 ORTHO05D004507 7.5e-39 166.0 137 54.7
Thhalv10003956m.g Eutrema salsugineum HOM05D003767 ORTHO05D004507 7.5e-39 166.0 137 56.2
C09p05700 Brassica napus HOM05D003767 ORTHO05D004507 1.7e-38 164.9 134 56.0
TPR.G33204 Trifolium pratense HOM05D003767 ORTHO05D004507 2.2e-38 164.5 165 50.9
Medtr7g113880 Medicago truncatula HOM05D003767 ORTHO05D004507 3.7e-38 163.7 136 60.3
THA.LOC104821704 Tarenaya hassleriana HOM05D003767 ORTHO05D004507 3.7e-38 163.7 196 45.9
Glyma.03G240600 Glycine max HOM05D003767 ORTHO05D004507 4.9e-38 163.3 195 47.7
CsaV3_1G039210 Cucumis sativus L. HOM05D003767 ORTHO05D004507 6.4e-38 162.9 130 60.0
MELO3C015345.2 Cucumis melo HOM05D003767 ORTHO05D004507 8.3e-38 162.5 132 59.1
Lj1g0000488 Lotus japonicus HOM05D003767 ORTHO05D004507 8.3e-38 162.5 137 56.2
Phvul.006G094500 Phaseolus vulgaris HOM05D003767 ORTHO05D004507 8.3e-38 162.5 137 59.1
BcaNung04364 Brassica carinata HOM05D003767 ORTHO05D004507 1.1e-37 162.2 135 55.6
DCAR_005538 Daucus carota HOM05D003767 ORTHO05D004507 1.4e-37 161.8 137 57.7
Glyma.19G237700 Glycine max HOM05D003767 ORTHO05D004507 1.4e-37 161.8 195 47.2
MSTRG.8108 Avicennia marina HOM05D003767 ORTHO05D004507 1.9e-37 161.4 137 56.2
BolC7t44598H Brassica oleracea HOM05D003767 ORTHO05D004507 1.9e-37 161.4 141 52.5
A09p05240 Brassica napus HOM05D003767 ORTHO05D004507 2.4e-37 161.0 137 53.3
BcaNung02467 Brassica carinata HOM05D003767 ORTHO05D004507 4.1e-37 160.2 136 53.7
C07p40700 Brassica napus HOM05D003767 ORTHO05D004507 4.1e-37 160.2 136 53.7
TWI56G0745 Tripterygium wilfordii HOM05D003767 ORTHO05D004507 4.1e-37 160.2 137 54.0
Aa31LG11G9150 Aethionema arabicum HOM05D003767 ORTHO05D004507 5.4e-37 159.8 136 53.7
AL6G39640 Arabidopsis lyrata HOM05D003767 ORTHO05D004507 5.4e-37 159.8 172 51.2
arahy.Tifrunner.gnm1.ann1.1T3PYK Arachis hypogaea HOM05D003767 ORTHO05D004507 5.4e-37 159.8 166 47.0
Cpa.g.sc48.5 Carica papaya HOM05D003767 ORTHO05D004507 5.4e-37 159.8 125 60.8
FAN14G0860 Fragaria x ananassa HOM05D003767 ORTHO05D004507 5.4e-37 159.8 125 61.6
FAN14G3644 Fragaria x ananassa HOM05D003767 ORTHO05D004507 5.4e-37 159.8 125 61.6
Sabra05G0038000 Salix brachista HOM05D003767 ORTHO05D004507 5.4e-37 159.8 146 54.8
Ah.06g190170 Amaranthus hybridus HOM05D003767 ORTHO05D004507 7.1e-37 159.5 120 64.2
Cc02_g32590 Coffea canephora HOM05D003767 ORTHO05D004507 9.2e-37 159.1 120 64.2
AUR62000859 Chenopodium quinoa HOM05D003767 ORTHO05D004507 1.2e-36 158.7 152 53.3
EL10Ac4g09299 Beta vulgaris HOM05D003767 ORTHO05D004507 1.6e-36 158.3 119 63.9
A06p37610 Brassica napus HOM05D003767 ORTHO05D004507 1.6e-36 158.3 135 53.3
BraA06t26680Z Brassica rapa HOM05D003767 ORTHO05D004507 1.6e-36 158.3 135 53.3
Solyc01g098610.4 Solanum lycopersicum HOM05D003767 ORTHO05D004507 2.7e-36 157.5 137 54.0
PGSC0003DMG400028599 Solanum tuberosum HOM05D003767 ORTHO05D004507 2.7e-36 157.5 137 54.0
AT5G27380 Arabidopsis thaliana HOM05D003767 ORTHO05D004507 3.5e-36 157.1 133 56.4
arahy.Tifrunner.gnm1.ann1.RYM43V Arachis hypogaea HOM05D003767 ORTHO05D004507 3.5e-36 157.1 166 46.4
Phvul.006G094700 Phaseolus vulgaris HOM05D003767 ORTHO05D004507 3.5e-36 157.1 151 50.3
CARHR185970 Cardamine hirsuta HOM05D003767 ORTHO05D004507 4.6e-36 156.8 137 54.0
Mapoly0002s0041 Marchantia polymorpha HOM05D003767 ORTHO05D004507 7.8e-36 156.0 133 55.6
unitig_26.g9470 Utricularia gibba HOM05D003767 ORTHO05D004507 1.0e-35 155.6 145 52.4
BraA09t36163Z Brassica rapa HOM05D003767 ORTHO05D004507 1.3e-35 155.2 140 52.1
VMungo0540G0577 Vigna mungo HOM05D003767 ORTHO05D004507 2.3e-35 154.5 183 49.2
AUR62005115 Chenopodium quinoa HOM05D003767 ORTHO05D004507 3.0e-35 154.1 152 51.3
SMO271G0026 Selaginella moellendorffii HOM05D003767 ORTHO05D004507 3.0e-35 154.1 131 55.7
SGA_v2.0_scaffold13G06464 Striga asiatica HOM05D003767 ORTHO05D004507 3.0e-35 154.1 119 61.3
SalBow6G1775 Salvia bowleyana HOM05D003767 ORTHO05D003551 3.9e-35 153.7 125 59.2
Lsat_1_v5_gn_2_64341 Lactuca sativa HOM05D003767 ORTHO05D004507 6.6e-35 152.9 119 61.3
FAN05G2944 Fragaria x ananassa HOM05D003767 ORTHO05D004507 1.1e-34 152.1 125 58.4
Sopen01g042160 Solanum pennellii HOM05D003767 ORTHO05D004507 1.5e-34 151.8 152 48.7
RhsimUnG0080300 Rhododendron simsii HOM05D003767 ORTHO05D004507 2.5e-34 151.0 133 55.6
BcaB04g19665 Brassica carinata HOM05D003767 ORTHO05D004507 4.3e-34 150.2 125 56.0
BcaC04g23683 Brassica carinata HOM05D003767 ORTHO05D004507 4.3e-34 150.2 125 55.2
BolC9t53499H Brassica oleracea HOM05D003767 ORTHO05D004507 4.3e-34 150.2 125 55.2
Lalb_Chr18g0045501 Lupinus albus HOM05D003767 ORTHO05D004507 4.3e-34 150.2 182 44.5
RcHm_v2.0_Chr3g0453991 Rosa chinensis HOM05D003767 ORTHO05D004507 7.3e-34 149.4 170 46.5
Nitab4.5_0004940g0030 Nicotiana tabacum HOM05D003767 ORTHO05D004507 4.7e-33 146.7 139 48.9
MD12G1224500 Malus domestica HOM05D003767 ORTHO05D004507 8.1e-33 146.0 125 57.6
CSS0020414 Camellia sinensis var. sinensis HOM05D003767 ORTHO05D004507 3.4e-31 140.6 127 53.5
CAN.G1134.12 Capsicum annuum HOM05D003767 ORTHO05D004507 5.8e-31 139.8 119 57.1
Rhsim07G0179200 Rhododendron simsii HOM05D003767 ORTHO05D004507 1.7e-30 138.3 125 55.2
Nitab4.5_0001423g0150 Nicotiana tabacum HOM05D003767 ORTHO05D004507 2.2e-30 137.9 125 52.0
Hund07038 Selenicereus undatus HOM05D003767 ORTHO05D004507 2.2e-30 137.9 125 55.2
Lj9A681G36 Lonicera japonica HOM05D003767 ORTHO05D004507 2.9e-30 137.5 125 56.0
MBI17_g18114_MAGBIO Magnolia biondii HOM05D003767 ORTHO05D004507 8.4e-30 136.0 121 57.9
VMungo0540G2084 Vigna mungo HOM05D003767 ORTHO05D004507 8.4e-30 136.0 121 53.7
QL03p004251 Quercus lobata HOM05D003767 ORTHO05D004507 3.2e-29 134.0 155 44.5
CSS0005723 Camellia sinensis var. sinensis HOM05D003767 ORTHO05D004507 5.4e-29 133.3 125 52.0
ClCG03G016760 Citrullus lanatus HOM05D003767 ORTHO05D004507 5.4e-29 133.3 201 38.3
Pp3c1_36280 Physcomitrium patens HOM05D003767 ORTHO05D004507 7.1e-29 132.9 137 45.3
DCAR_002932 Daucus carota HOM05D003767 ORTHO05D004507 2.1e-28 131.3 126 53.2
PRCOL_00004575 Prasinoderma coloniale HOM05D003767 ORTHO05D004507 3.0e-27 127.5 133 47.4
COL.COLO4_12128 Corchorus olitorius HOM05D003767 ORTHO05D004507 5.1e-27 126.7 125 54.4
FAN09G3025 Fragaria x ananassa HOM05D003767 ORTHO05D004507 5.6e-26 123.2 125 50.4
VMungo0540G2112 Vigna mungo HOM05D003767 ORTHO05D004507 1.1e-24 119.0 107 51.4
Psat3g009360 Pisum sativum HOM05D003767 ORTHO05D004507 2.4e-24 117.9 125 49.6
HPP92_001826 Vanilla planifolia HOM05D003767 ORTHO05D004507 9.0e-24 115.9 125 48.8
Peaxi162Scf00434g00336 Petunia axillaris HOM05D003767 ORTHO05D004507 4.4e-23 113.6 93 58.1
FAN05G1904 Fragaria x ananassa HOM05D003767 ORTHO05D004507 7.6e-23 112.8 132 47.0
HanXRQChr10g0295061 Helianthus annuus HOM05D003767 ORTHO05D004507 7.6e-23 112.8 72 70.8
Cre17.g708800 Chlamydomonas reinhardtii HOM05D003767 ORTHO05D004507 2.9e-22 110.9 155 43.2
Haze_04251 Corylus avellana HOM05D003767 ORTHO05D004507 1.4e-21 108.6 97 53.6
AagrBONN_evm.TU.Sc2ySwM_117.2518 Anthoceros agrestis HOM05D003767 ORTHO05D004507 5.4e-21 106.7 120 48.3
MCO07G639 Micromonas commoda HOM05D003767 ORTHO05D004507 1.2e-20 105.5 131 44.3
CSS0000499 Camellia sinensis var. sinensis HOM05D003767 ORTHO05D004507 7.8e-20 102.8 67 65.7
Actinidia05727 Actinidia chinensis HOM05D003767 ORTHO05D004507 4.0e-16 90.5 138 43.5
Lalb_Chr15g0077051 Lupinus albus HOM05D003767 ORTHO05D004507 9.0e-16 89.4 47 83.0
HanXRQChr14g0446461 Helianthus annuus HOM05D003767 ORTHO05D004507 9.9e-15 85.9 47 78.7
ATR0626G007 Amborella trichopoda HOM05D003767 ORTHO05D004507 2.9e-14 84.3 51 70.6
SMO304G0030 Selaginella moellendorffii HOM05D003767 ORTHO05D004507 3.8e-14 84.0 131 42.7
Psat1g075760 Pisum sativum HOM05D003767 ORTHO05D004507 6.4e-14 83.2 96 44.8
Sabra13G0027500 Salix brachista HOM05D004613 ORTHO05D006095 8.4e-14 82.8 51 70.6
Cfa024552 Carpinus fangiana HOM05D003767 ORTHO05D004507 7.1e-13 79.7 163 33.1
Actinidia24503 Actinidia chinensis HOM05D003767 ORTHO05D004507 3.5e-12 77.4 71 52.1
SGA_v2.0_scaffold499G52492 Striga asiatica HOM05D003767 ORTHO05D004507 1.1e-10 72.4 66 51.5
HanXRQChr14g0446471 Helianthus annuus HOM05D003767 ORTHO05D004507 1.5e-10 72.0 53 60.4
RcHm_v2.0_Chr2g0172971 Rosa chinensis HOM05D003767 ORTHO05D004507 1.5e-10 72.0 64 53.1
ATR0626G021 Amborella trichopoda HOM05D003767 ORTHO05D004507 3.3e-10 70.9 48 66.7
Nn1g08361 Nelumbo nucifera HOM05D003767 ORTHO05D004507 7.4e-10 69.7 46 58.7
HanXRQChr10g0295071 Helianthus annuus HOM05D003767 ORTHO05D004507 2.8e-09 67.8 60 53.3
FAN02G0487 Fragaria x ananassa HOM05D003767 ORTHO05D004507 8.1e-09 66.2 52 55.8
BolC5t32099H Brassica oleracea HOM05D003767 ORTHO05D041347 2.2e-06 58.2 49 57.1
C05p33690 Brassica napus HOM05D003767 ORTHO05D041347 8.4e-06 56.2 33 69.7


User provided reference genes

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