Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SEGI_30975 Sequoiadendron giganteum HOM05D004452 ORTHO05D005358 1.9e-187 659.1 341 100.0
Lj4A59T44 Lonicera japonica HOM05D004452 ORTHO05D005358 3.5e-109 399.1 315 64.4
CSS0026728 Camellia sinensis var. sinensis HOM05D004452 ORTHO05D005358 3.9e-108 395.6 312 65.1
TAR381G1434 Trochodendron aralioides HOM05D004452 ORTHO05D005358 6.6e-108 394.8 312 64.4
Actinidia23285 Actinidia chinensis HOM05D004452 ORTHO05D005358 8.7e-108 394.4 312 65.7
CiPaw.15G055600 Carya illinoinensis HOM05D004452 ORTHO05D005358 8.7e-108 394.4 312 62.5
GSVIVG01009484001 Vitis vinifera HOM05D004452 ORTHO05D005358 4.3e-107 392.1 312 63.1
Potri.014G028100 Populus trichocarpa HOM05D004452 ORTHO05D005358 5.6e-107 391.7 315 63.2
Cfa018088 Carpinus fangiana HOM05D004452 ORTHO05D005358 1.3e-106 390.6 312 62.5
Atru.chr13.704 Acer truncatum HOM05D004452 ORTHO05D005358 3.6e-106 389.0 342 59.6
Sabra14G0019200 Salix brachista HOM05D004452 ORTHO05D005358 4.8e-106 388.7 315 62.2
Rhsim06G0050800 Rhododendron simsii HOM05D004452 ORTHO05D005358 2.4e-105 386.3 325 63.1
COL.COLO4_26520 Corchorus olitorius HOM05D004452 ORTHO05D005358 5.3e-105 385.2 312 62.5
Oeu043579.4 Olea europaea HOM05D004452 ORTHO05D005358 6.9e-105 384.8 315 61.0
PGR031G1897 Punica granatum HOM05D004452 ORTHO05D005358 6.9e-105 384.8 312 65.7
Duzib093G1704 Durio zibethinus HOM05D004452 ORTHO05D005358 1.2e-104 384.0 316 61.1
Nn5g30286 Nelumbo nucifera HOM05D004452 ORTHO05D005358 1.5e-104 383.6 312 63.1
Manes.18G038000 Manihot esculenta HOM05D004452 ORTHO05D005358 2.6e-104 382.9 315 61.0
Dinv39307 Davidia involucrata HOM05D004452 ORTHO05D005358 3.4e-104 382.5 312 64.1
vmacro21515 Vaccinium macrocarpon HOM05D004452 ORTHO05D005358 4.5e-104 382.1 315 64.8
SalBow8G0374 Salvia bowleyana HOM05D004452 ORTHO05D005358 5.8e-104 381.7 315 65.1
SalBow8G3632 Salvia bowleyana HOM05D004452 ORTHO05D005358 5.8e-104 381.7 315 65.1
Cc10_g04060 Coffea canephora HOM05D004452 ORTHO05D005358 9.9e-104 380.9 315 61.3
DCAR_019448 Daucus carota HOM05D004452 ORTHO05D005358 9.9e-104 380.9 315 64.8
Gohir.D05G206300 Gossypium hirsutum HOM05D004452 ORTHO05D005358 9.9e-104 380.9 312 60.9
QL02p004676 Quercus lobata HOM05D004452 ORTHO05D005358 1.3e-103 380.6 312 64.7
Gohir.A05G203100 Gossypium hirsutum HOM05D004452 ORTHO05D005358 2.2e-103 379.8 312 60.6
PSO170G2588 Papaver somniferum HOM05D004452 ORTHO05D005358 3.8e-103 379.0 315 64.4
Dinv35952 Davidia involucrata HOM05D004452 ORTHO05D005358 1.4e-102 377.1 308 63.6
Lalb_Chr11g0062611 Lupinus albus HOM05D004452 ORTHO05D005358 1.4e-102 377.1 314 60.5
Gorai.009G212700 Gossypium raimondii HOM05D004452 ORTHO05D005358 1.9e-102 376.7 312 60.3
MBI06_g02568_MAGBIO Magnolia biondii HOM05D004452 ORTHO05D005358 2.4e-102 376.3 312 60.6
Eucgr.F02336 Eucalyptus grandis HOM05D004452 ORTHO05D005358 3.2e-102 375.9 312 64.4
FAN20G1510 Fragaria x ananassa HOM05D004452 ORTHO05D005358 3.2e-102 375.9 315 62.2
Migut.N02714 Erythranthe guttata HOM05D004452 ORTHO05D005358 4.2e-102 375.6 312 64.7
PSO210G0441 Papaver somniferum HOM05D004452 ORTHO05D005358 5.5e-102 375.2 315 63.8
Ciclev10000290m.g Citrus clementina HOM05D004452 ORTHO05D005358 7.1e-102 374.8 315 60.0
Glyma.04G039400 Glycine max HOM05D004452 ORTHO05D005358 7.1e-102 374.8 312 62.2
Thecc.08G005800 Theobroma cacao HOM05D004452 ORTHO05D005358 9.3e-102 374.4 312 60.6
FAN27G2914 Fragaria x ananassa HOM05D004452 ORTHO05D005358 1.2e-101 374.0 315 61.9
CiPaw.16G042900 Carya illinoinensis HOM05D004452 ORTHO05D005358 1.6e-101 373.6 312 60.9
CsaV3_4G034360 Cucumis sativus L. HOM05D004452 ORTHO05D005358 1.6e-101 373.6 312 64.1
RcHm_v2.0_Chr6g0308041 Rosa chinensis HOM05D004452 ORTHO05D005358 3.5e-101 372.5 312 59.9
MELO3C016756.2 Cucumis melo HOM05D004452 ORTHO05D005358 7.9e-101 371.3 312 63.8
FAN15G1326 Fragaria x ananassa HOM05D004452 ORTHO05D005358 7.9e-101 371.3 315 61.6
Lsat_1_v5_gn_1_21181 Lactuca sativa HOM05D004452 ORTHO05D005358 7.9e-101 371.3 315 61.0
Glyma.06G040600 Glycine max HOM05D004452 ORTHO05D005358 1.0e-100 370.9 312 59.9
TWI56G0235 Tripterygium wilfordii HOM05D004452 ORTHO05D005358 1.0e-100 370.9 315 63.5
Aqoxy5G01224 Aquilegia oxysepala HOM05D004452 ORTHO05D005358 2.3e-100 369.8 314 58.9
ClCG05G019920 Citrullus lanatus HOM05D004452 ORTHO05D005358 3.0e-100 369.4 316 63.0
Lj1g0004160 Lotus japonicus HOM05D004452 ORTHO05D005358 3.0e-100 369.4 312 60.6
CAN.G1030.10 Capsicum annuum HOM05D004452 ORTHO05D005358 3.9e-100 369.0 312 63.5
Ca_15944_v3 Cicer arietinum L. HOM05D004452 ORTHO05D005358 3.9e-100 369.0 315 59.0
FvH4_2g34320 Fragaria vesca HOM05D004452 ORTHO05D005358 5.1e-100 368.6 315 61.0
THA.LOC104822853 Tarenaya hassleriana HOM05D004452 ORTHO05D005358 6.7e-100 368.2 315 63.2
Psat5g042600 Pisum sativum HOM05D004452 ORTHO05D005358 8.7e-100 367.9 315 58.7
Prupe.1G434400 Prunus persica HOM05D004452 ORTHO05D005358 1.5e-99 367.1 312 59.3
TWI36G0852 Tripterygium wilfordii HOM05D004452 ORTHO05D005358 1.5e-99 367.1 315 63.5
Phvul.009G065600 Phaseolus vulgaris HOM05D004452 ORTHO05D005358 1.9e-99 366.7 312 62.8
ATR1126G044 Amborella trichopoda HOM05D004452 ORTHO05D005358 4.3e-99 365.5 313 60.7
Sed0009272 Sechium edule HOM05D004452 ORTHO05D005358 5.6e-99 365.2 312 61.5
HanXRQChr02g0039511 Helianthus annuus HOM05D004452 ORTHO05D005358 7.4e-99 364.8 318 64.2
TPR.G24198 Trifolium pratense HOM05D004452 ORTHO05D005358 9.6e-99 364.4 315 59.7
arahy.Tifrunner.gnm1.ann1.UAD7VL Arachis hypogaea HOM05D004452 ORTHO05D005358 1.6e-98 363.6 314 61.5
arahy.Tifrunner.gnm1.ann1.Y5ZCTQ Arachis hypogaea HOM05D004452 ORTHO05D005358 2.1e-98 363.2 314 61.5
MD15G1081700 Malus domestica HOM05D004452 ORTHO05D005358 2.1e-98 363.2 314 57.6
Nitab4.5_0002760g0030 Nicotiana tabacum HOM05D004452 ORTHO05D005358 2.8e-98 362.8 312 62.8
PGSC0003DMG400007967 Solanum tuberosum HOM05D004452 ORTHO05D005358 3.7e-98 362.5 312 62.8
ECA247G0253 Erigeron canadensis HOM05D004452 ORTHO05D005358 1.8e-97 360.1 345 59.7
Solyc04g078830.3 Solanum lycopersicum HOM05D004452 ORTHO05D005358 4.0e-97 359.0 312 62.8
SGA_v2.0_scaffold28G11777 Striga asiatica HOM05D004452 ORTHO05D005358 4.0e-97 359.0 311 58.8
Mapoly0012s0112 Marchantia polymorpha HOM05D004452 ORTHO05D005358 5.3e-97 358.6 329 60.5
Medtr3g101790 Medicago truncatula HOM05D004452 ORTHO05D005358 5.3e-97 358.6 316 58.2
Cpa.g.sc49.27 Carica papaya HOM05D004452 ORTHO05D005358 6.9e-97 358.2 310 62.3
Nitab4.5_0000287g0200 Nicotiana tabacum HOM05D004452 ORTHO05D005358 6.9e-97 358.2 312 63.1
CANSAT11G1000 Cannabis sativa HOM05D004452 ORTHO05D005358 1.2e-96 357.5 312 61.9
Sc15g0006090 Simmondsia chinensis HOM05D004452 ORTHO05D005358 2.0e-96 356.7 312 58.7
MSTRG.24335 Avicennia marina HOM05D004452 ORTHO05D005358 5.8e-96 355.1 312 61.5
AUR62041892 Chenopodium quinoa HOM05D004452 ORTHO05D005358 1.0e-95 354.4 312 61.2
AL8G17930 Arabidopsis lyrata HOM05D004452 ORTHO05D005358 4.9e-95 352.1 315 61.6
Lalb_Chr08g0245391 Lupinus albus HOM05D004452 ORTHO05D005358 6.5e-95 351.7 314 60.5
VMungo1309G1308 Vigna mungo HOM05D004452 ORTHO05D005358 1.1e-94 350.9 312 61.5
FAN24G0195 Fragaria x ananassa HOM05D004452 ORTHO05D005358 1.9e-94 350.1 364 53.8
Carub.0008s0587 Capsella rubella HOM05D004452 ORTHO05D005358 4.2e-94 349.0 315 61.6
EL10Ac1g01836 Beta vulgaris HOM05D004452 ORTHO05D005358 5.5e-94 348.6 312 61.5
Glyma.17G241800 Glycine max HOM05D004452 ORTHO05D005358 5.5e-94 348.6 316 57.0
Hma1.2p1_2046F.1_g312410 Hydrangea macrophylla HOM05D004452 ORTHO05D005358 1.6e-93 347.1 292 60.6
BcaC06g31738 Brassica carinata HOM05D004452 ORTHO05D005358 2.7e-93 346.3 315 59.4
Thhalv10003147m.g Eutrema salsugineum HOM05D004452 ORTHO05D005358 7.9e-93 344.7 315 60.0
Peaxi162Scf00252g00221 Petunia axillaris HOM05D004452 ORTHO05D005358 1.8e-92 343.6 297 62.0
Phvul.001G022500 Phaseolus vulgaris HOM05D004452 ORTHO05D005358 3.9e-92 342.4 316 57.3
AT5G42920 Arabidopsis thaliana HOM05D004452 ORTHO05D005358 6.7e-92 341.7 315 61.3
BcaC02g10792 Brassica carinata HOM05D004452 ORTHO05D005358 8.7e-92 341.3 318 59.1
C04p25060 Brassica napus HOM05D004452 ORTHO05D005358 8.7e-92 341.3 318 59.1
BolC4t24007H Brassica oleracea HOM05D004452 ORTHO05D005358 8.7e-92 341.3 318 59.1
Glyma.14G083300 Glycine max HOM05D004452 ORTHO05D005358 8.7e-92 341.3 316 56.6
Aa31LG9G12980 Aethionema arabicum HOM05D004452 ORTHO05D005358 1.1e-91 340.9 313 59.4
CDE04G2017 Ceratophyllum demersum HOM05D004452 ORTHO05D005358 1.1e-91 340.9 313 58.1
A06p48170 Brassica napus HOM05D004452 ORTHO05D005358 1.5e-91 340.5 316 58.9
BraA06t27686Z Brassica rapa HOM05D004452 ORTHO05D005358 2.5e-91 339.7 316 59.5
CARHR181170 Cardamine hirsuta HOM05D004452 ORTHO05D005358 3.3e-91 339.3 315 60.0
Sp2g07660 Schrenkiella parvula HOM05D004452 ORTHO05D005358 5.7e-91 338.6 315 59.0
CDE08G0013 Ceratophyllum demersum HOM05D004452 ORTHO05D005358 4.8e-90 335.5 313 55.3
Sc02g0007190 Simmondsia chinensis HOM05D004452 ORTHO05D005358 5.3e-89 332.0 311 57.6
Hund23866 Selenicereus undatus HOM05D004452 ORTHO05D005358 6.9e-89 331.6 312 56.7
SHI08268 Sapria himalayana HOM05D004452 ORTHO05D005358 1.2e-88 330.9 338 54.1
Os02g0767100 Oryza sativa ssp. japonica HOM05D004452 ORTHO05D005358 2.6e-88 329.7 315 57.8
CANSAT11G0118 Cannabis sativa HOM05D004452 ORTHO05D005358 5.9e-88 328.6 309 56.0
THA.LOC104812571 Tarenaya hassleriana HOM05D004452 ORTHO05D005358 1.7e-87 327.0 316 59.2
arahy.Tifrunner.gnm1.ann1.IXK305 Arachis hypogaea HOM05D004452 ORTHO05D005358 1.4e-86 323.9 316 53.5
arahy.Tifrunner.gnm1.ann1.VB8FSW Arachis hypogaea HOM05D004452 ORTHO05D005358 1.4e-86 323.9 316 53.5
SMO356G0003 Selaginella moellendorffii HOM05D004452 ORTHO05D005358 5.5e-86 322.0 334 56.3
unitig_26.g10021 Utricularia gibba HOM05D002518 ORTHO05D002630 5.5e-86 322.0 316 56.0
VMungo0647G1811 Vigna mungo HOM05D004452 ORTHO05D005358 7.2e-86 321.6 316 55.4
Oeu023860.1 Olea europaea HOM05D004452 ORTHO05D005358 7.9e-85 318.2 307 53.7
MSTRG.25087 Avicennia marina HOM05D004452 ORTHO05D005358 4.3e-83 312.4 311 54.0
Zm00001eb255990 Zea mays HOM05D004452 ORTHO05D005358 4.3e-83 312.4 315 57.8
AL1G52910 Arabidopsis lyrata HOM05D004452 ORTHO05D005358 4.2e-78 295.8 311 51.4
AT1G45233 Arabidopsis thaliana HOM05D004452 ORTHO05D005358 3.6e-77 292.7 311 52.4
Sp1g34090 Schrenkiella parvula HOM05D004452 ORTHO05D005358 1.0e-76 291.2 306 51.0
Thhalv10011479m.g Eutrema salsugineum HOM05D004452 ORTHO05D005358 5.7e-75 285.4 311 51.1
Nn7g37344 Nelumbo nucifera HOM05D004452 ORTHO05D005358 8.2e-74 281.6 230 65.7
Carub.0001s3568 Capsella rubella HOM05D004452 ORTHO05D005358 9.1e-73 278.1 311 50.2
CARHR036370 Cardamine hirsuta HOM05D004452 ORTHO05D005358 1.0e-71 274.6 308 50.0
Aa31sc108G100 Aethionema arabicum HOM05D004452 ORTHO05D005358 1.7e-71 273.9 312 50.0
Sed0026470 Sechium edule HOM05D004452 ORTHO05D005358 1.7e-71 273.9 309 52.8
AagrBONN_evm.TU.Sc2ySwM_228.4151 Anthoceros agrestis HOM05D004452 ORTHO05D005358 3.8e-71 272.7 328 47.9
BcaB07g33871 Brassica carinata HOM05D004452 ORTHO05D005358 1.9e-70 270.4 306 49.0
A10p06900 Brassica napus HOM05D004452 ORTHO05D005358 4.2e-70 269.2 307 49.8
C06p01470 Brassica napus HOM05D004452 ORTHO05D005358 2.1e-69 266.9 306 48.4
BcaC08g42910 Brassica carinata HOM05D004452 ORTHO05D005358 4.7e-69 265.8 306 48.0
BolC6t35279H Brassica oleracea HOM05D004452 ORTHO05D005358 6.1e-69 265.4 306 48.0
BraA10t42942Z Brassica rapa HOM05D004452 ORTHO05D005358 1.0e-68 264.6 309 49.2
CBR_g24409 Chara braunii HOM05D004452 ORTHO05D005358 6.7e-68 261.9 367 40.9
Pp3c7_25670 Physcomitrium patens HOM05D004452 ORTHO05D005358 6.7e-68 261.9 337 45.4
Potri.002G125300 Populus trichocarpa HOM05D004452 ORTHO05D005358 2.0e-67 260.4 315 47.9
HPP92_016717 Vanilla planifolia HOM05D004452 ORTHO05D005358 4.1e-65 252.7 297 48.8
Sopen04g032430 Solanum pennellii HOM05D004452 ORTHO05D005358 2.5e-62 243.4 234 57.7
AUR62038817 Chenopodium quinoa HOM05D004452 ORTHO05D005358 1.4e-52 211.1 174 58.6
AagrBONN_evm.TU.Sc2ySwM_117.2784 Anthoceros agrestis HOM05D004452 ORTHO05D005358 9.8e-51 204.9 327 39.4
unitig_749.g13678 Utricularia gibba HOM05D004452 ORTHO05D005358 3.5e-48 196.4 201 52.7
TAR625G1031 Trochodendron aralioides HOM05D004452 ORTHO05D005358 5.7e-43 179.1 113 79.6
MD08G1099300 Malus domestica HOM05D004452 ORTHO05D005358 1.5e-38 164.5 147 53.7
Nn3g17073 Nelumbo nucifera HOM05D004452 ORTHO05D005358 1.2e-37 161.4 132 66.7
MCO13G423 Micromonas commoda HOM05D004452 ORTHO05D005358 1.4e-36 157.9 343 34.7
Cre17.g705550 Chlamydomonas reinhardtii HOM05D004452 ORTHO05D005358 5.0e-31 139.4 317 30.0
Aa31LG7G10550 Aethionema arabicum HOM05D004452 ORTHO05D005358 1.8e-20 104.4 93 53.8
MD08G1099200 Malus domestica HOM05D004452 ORTHO05D005358 1.8e-12 77.8 58 72.4
CARHR174670 Cardamine hirsuta HOM05D004452 ORTHO05D005358 3.2e-09 67.0 54 57.4
Aa31LG7G10540 Aethionema arabicum HOM05D004452 ORTHO05D005358 7.1e-09 65.9 50 70.0


User provided reference genes

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