Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SEGI_30195 Sequoiadendron giganteum HOM05D005949 ORTHO05D006945 2.0e-227 792.3 468 100.0
Nn2g12389 Nelumbo nucifera HOM05D005949 ORTHO05D006945 2.2e-125 453.4 418 62.4
TAR374G0398 Trochodendron aralioides HOM05D005949 ORTHO05D006945 2.2e-125 453.4 414 55.8
GSVIVG01032367001 Vitis vinifera HOM05D005949 ORTHO05D006945 4.1e-124 449.1 411 63.3
CSS0029670 Camellia sinensis var. sinensis HOM05D005949 ORTHO05D006945 1.7e-122 443.7 398 56.0
ClCG10G013730 Citrullus lanatus HOM05D005949 ORTHO05D006945 4.7e-120 435.6 405 64.4
CAN.G1235.24 Capsicum annuum HOM05D005949 ORTHO05D006945 8.0e-120 434.9 417 52.3
Manes.17G110300 Manihot esculenta HOM05D005949 ORTHO05D006945 8.0e-120 434.9 412 51.9
RhsimUnG0006400 Rhododendron simsii HOM05D005949 ORTHO05D006945 1.4e-119 434.1 411 53.0
RhsimUnG0087200 Rhododendron simsii HOM05D005949 ORTHO05D006945 1.4e-119 434.1 411 53.0
Nitab4.5_0001562g0070 Nicotiana tabacum HOM05D005949 ORTHO05D006945 2.3e-119 433.3 411 51.3
RcHm_v2.0_Chr2g0173461 Rosa chinensis HOM05D005949 ORTHO05D006945 6.7e-119 431.8 409 68.0
Nitab4.5_0006683g0100 Nicotiana tabacum HOM05D005949 ORTHO05D006945 2.0e-118 430.3 411 51.3
Aqoxy5G03678 Aquilegia oxysepala HOM05D005949 ORTHO05D006945 3.3e-118 429.5 411 53.3
ATR0199G040 Amborella trichopoda HOM05D005949 ORTHO05D006945 2.8e-117 426.4 407 59.7
Solyc01g112020.3 Solanum lycopersicum HOM05D005949 ORTHO05D006945 3.7e-117 426.0 410 51.0
Sopen01g054070 Solanum pennellii HOM05D005949 ORTHO05D006945 3.7e-117 426.0 410 50.7
PGSC0003DMG400018653 Solanum tuberosum HOM05D005949 ORTHO05D006945 4.8e-117 425.6 410 51.0
COL.COLO4_29188 Corchorus olitorius HOM05D005949 ORTHO05D006945 1.1e-116 424.5 405 58.5
MSTRG.15541 Avicennia marina HOM05D005949 ORTHO05D006945 1.4e-116 424.1 409 51.3
HanXRQChr15g0486811 Helianthus annuus HOM05D005949 ORTHO05D006945 4.1e-116 422.5 425 49.9
Sed0011104 Sechium edule HOM05D005949 ORTHO05D006945 9.1e-116 421.4 402 65.7
Duzib264G1167 Durio zibethinus HOM05D005949 ORTHO05D006945 3.5e-115 419.5 405 51.6
CiPaw.03G046600 Carya illinoinensis HOM05D005949 ORTHO05D006945 5.9e-115 418.7 411 64.7
Ciclev10015245m.g Citrus clementina HOM05D005949 ORTHO05D006945 7.7e-115 418.3 413 50.8
FAN05G2654 Fragaria x ananassa HOM05D005949 ORTHO05D006945 1.0e-114 417.9 420 64.3
Migut.K01417 Erythranthe guttata HOM05D005949 ORTHO05D006945 2.2e-114 416.8 409 62.3
Lsat_1_v5_gn_4_184520 Lactuca sativa HOM05D005949 ORTHO05D006945 1.2e-112 411.0 425 48.9
FAN09G2334 Fragaria x ananassa HOM05D005949 ORTHO05D006945 2.1e-112 410.2 420 50.0
QL02p073821 Quercus lobata HOM05D005949 ORTHO05D006945 2.1e-112 410.2 411 56.9
FvH4_6g51990 Fragaria vesca HOM05D005949 ORTHO05D006945 3.6e-112 409.5 418 63.6
Prupe.3G295200 Prunus persica HOM05D005949 ORTHO05D006945 8.0e-112 408.3 411 64.2
Phvul.004G060400 Phaseolus vulgaris HOM05D005949 ORTHO05D006945 1.0e-111 407.9 430 54.2
FAN02G3213 Fragaria x ananassa HOM05D005949 ORTHO05D006945 2.3e-111 406.8 420 63.1
Gorai.011G094000 Gossypium raimondii HOM05D005949 ORTHO05D006945 2.3e-111 406.8 405 58.8
Aa31LG6G12800 Aethionema arabicum HOM05D005949 ORTHO05D006945 5.2e-111 405.6 403 64.8
Haze_14768 Corylus avellana HOM05D005949 ORTHO05D006945 6.8e-111 405.2 423 54.8
FAN14G1023 Fragaria x ananassa HOM05D005949 ORTHO05D006945 6.8e-111 405.2 420 63.1
PGR083G1217 Punica granatum HOM05D005949 ORTHO05D006945 6.8e-111 405.2 419 55.6
Gohir.D10G085800 Gossypium hirsutum HOM05D005949 ORTHO05D006945 8.8e-111 404.8 405 58.5
THA.LOC104819734 Tarenaya hassleriana HOM05D005949 ORTHO05D006945 1.5e-110 404.1 410 62.9
Glyma.05G115200 Glycine max HOM05D005949 ORTHO05D006945 2.0e-110 403.7 399 58.1
PSO063G1157 Papaver somniferum HOM05D005949 ORTHO05D006945 2.0e-110 403.7 417 49.4
Cfa007328 Carpinus fangiana HOM05D005949 ORTHO05D006945 3.4e-110 402.9 413 55.7
VMungo0464G1442 Vigna mungo HOM05D005949 ORTHO05D006945 3.4e-110 402.9 420 57.6
MD09G1021300 Malus domestica HOM05D005949 ORTHO05D006945 4.4e-110 402.5 423 60.3
MD17G1021300 Malus domestica HOM05D005949 ORTHO05D006945 4.4e-110 402.5 412 62.1
Eucgr.J02262 Eucalyptus grandis HOM05D005949 ORTHO05D006945 7.5e-110 401.7 399 56.6
HPP92_016937 Vanilla planifolia HOM05D005949 ORTHO05D006945 7.5e-110 401.7 407 51.8
CANSAT64G2213 Cannabis sativa HOM05D005949 ORTHO05D006945 9.8e-110 401.4 420 55.5
Carub.0007s0438 Capsella rubella HOM05D005949 ORTHO05D006945 9.8e-110 401.4 397 63.0
ECA232G4961 Erigeron canadensis HOM05D005949 ORTHO05D006945 1.3e-109 401.0 420 48.3
Lalb_Chr06g0174481 Lupinus albus HOM05D005949 ORTHO05D006945 6.3e-109 398.7 407 58.2
Thecc.04G021200 Theobroma cacao HOM05D005949 ORTHO05D006945 6.3e-109 398.7 405 56.5
Glyma.19G052100 Glycine max HOM05D005949 ORTHO05D006945 1.1e-108 397.9 428 57.0
Gohir.A10G101600 Gossypium hirsutum HOM05D005949 ORTHO05D006945 1.4e-108 397.5 405 57.8
AT4G35850 Arabidopsis thaliana HOM05D005949 ORTHO05D006945 1.8e-108 397.1 410 60.5
AL7G15220 Arabidopsis lyrata HOM05D005949 ORTHO05D006945 2.4e-108 396.7 397 62.0
C01p03190 Brassica napus HOM05D005949 ORTHO05D006945 2.4e-108 396.7 411 60.1
BraA01t00268Z Brassica rapa HOM05D005949 ORTHO05D006945 2.4e-108 396.7 411 59.9
Os05g0145600 Oryza sativa ssp. japonica HOM05D005949 ORTHO05D006945 5.4e-108 395.6 444 59.9
BcaNung04881 Brassica carinata HOM05D005949 ORTHO05D006945 7.0e-108 395.2 411 61.1
A01p02870 Brassica napus HOM05D005949 ORTHO05D006945 7.0e-108 395.2 411 59.4
Thhalv10025194m.g Eutrema salsugineum HOM05D005949 ORTHO05D006945 7.0e-108 395.2 411 60.1
PSO754G0010 Papaver somniferum HOM05D005949 ORTHO05D006945 7.0e-108 395.2 413 49.4
CARHR244220 Cardamine hirsuta HOM05D005949 ORTHO05D006945 9.1e-108 394.8 397 63.5
SGA_v2.0_scaffold47G17523 Striga asiatica HOM05D005949 ORTHO05D006945 1.2e-107 394.4 406 48.8
BolC1t00304H Brassica oleracea HOM05D005949 ORTHO05D006945 1.6e-107 394.0 411 59.4
Cc09_g05780 Coffea canephora HOM05D005949 ORTHO05D006945 4.5e-107 392.5 414 61.4
EL10Ac6g14123 Beta vulgaris HOM05D005949 ORTHO05D006945 2.2e-106 390.2 472 44.3
Lj2g0004695 Lotus japonicus HOM05D005949 ORTHO05D006945 2.9e-106 389.8 432 59.5
TWI12G1469 Tripterygium wilfordii HOM05D005949 ORTHO05D006945 2.1e-104 383.6 410 56.6
Ca_04380_v3 Cicer arietinum L. HOM05D005949 ORTHO05D006945 6.1e-104 382.1 412 52.9
Lj7C602T3 Lonicera japonica HOM05D005949 ORTHO05D006945 6.1e-104 382.1 439 46.5
Peaxi162Scf00420g00016 Petunia axillaris HOM05D005949 ORTHO05D006945 1.4e-103 380.9 412 48.3
BcaNung00787 Brassica carinata HOM05D005949 ORTHO05D006945 1.8e-103 380.6 411 48.2
TPR.G16864 Trifolium pratense HOM05D005949 ORTHO05D006945 6.8e-103 378.6 412 52.4
arahy.Tifrunner.gnm1.ann1.4A4JE9 Arachis hypogaea HOM05D005949 ORTHO05D006945 8.8e-103 378.3 410 57.8
CsaV3_3G042930 Cucumis sativus L. HOM05D000631 ORTHO05D000524 1.5e-102 377.5 399 63.4
Sabra16G0221400 Salix brachista HOM05D005949 ORTHO05D006945 2.6e-102 376.7 409 60.9
Potri.001G341400 Populus trichocarpa HOM05D005949 ORTHO05D006945 4.4e-102 375.9 401 61.8
Medtr6g021740 Medicago truncatula HOM05D005949 ORTHO05D006945 5.7e-102 375.6 444 50.0
TPR.G8694 Trifolium pratense HOM05D005949 ORTHO05D006945 6.3e-101 372.1 412 51.9
Zm00001eb354320 Zea mays HOM05D005949 ORTHO05D006945 1.4e-100 370.9 413 61.5
Ah.02g128260 Amaranthus hybridus HOM05D005949 ORTHO05D006945 1.0e-98 364.8 412 45.1
arahy.Tifrunner.gnm1.ann1.BK7H4N Arachis hypogaea HOM05D005949 ORTHO05D006945 6.6e-98 362.1 429 55.0
AUR62043287 Chenopodium quinoa HOM05D005949 ORTHO05D006945 8.6e-98 361.7 385 49.1
MELO3C026595.2 Cucumis melo HOM05D005949 ORTHO05D006945 7.2e-97 358.6 359 64.6
Atru.chr6.2442 Acer truncatum HOM05D005949 ORTHO05D006945 2.3e-90 337.0 263 60.5
AUR62028447 Chenopodium quinoa HOM05D005949 ORTHO05D006945 1.6e-88 330.9 276 58.0
DCAR_021740 Daucus carota HOM05D005949 ORTHO05D006945 8.0e-88 328.6 411 44.5
Sc09g0007150 Simmondsia chinensis HOM05D005949 ORTHO05D006945 1.3e-85 321.2 340 51.8
unitig_88.g27782 Utricularia gibba HOM05D005949 ORTHO05D006945 1.0e-82 311.6 271 55.7
Dinv25719 Davidia involucrata HOM05D005949 ORTHO05D006945 8.6e-82 308.5 303 57.1
Thhalv10023015m.g Eutrema salsugineum HOM05D005949 ORTHO05D006945 5.6e-81 305.8 410 50.7
Psat5g064960 Pisum sativum HOM05D005949 ORTHO05D006945 1.8e-79 300.8 268 54.5
SHI03792 Sapria himalayana HOM05D005949 ORTHO05D006945 1.8e-79 300.8 250 56.8
Actinidia36133 Actinidia chinensis HOM05D005949 ORTHO05D006945 1.4e-76 291.2 276 74.3
CSS0002019 Camellia sinensis var. sinensis HOM05D005949 ORTHO05D006945 3.6e-72 276.6 261 52.1
SMO201G0168 Selaginella moellendorffii HOM05D005949 ORTHO05D006945 1.4e-68 264.6 418 48.8
CDE04G3569 Ceratophyllum demersum HOM05D005949 ORTHO05D006945 2.4e-68 263.8 302 54.0
vmacro05885 Vaccinium macrocarpon HOM05D005949 ORTHO05D006945 9.2e-68 261.9 291 48.8
Pp3c14_7210 Physcomitrium patens HOM05D005949 ORTHO05D006945 8.1e-64 248.8 447 47.9
Pp3c1_21850 Physcomitrium patens HOM05D005949 ORTHO05D006945 5.2e-63 246.1 429 47.6
Cpa.g.sc130.71 Carica papaya HOM05D005949 ORTHO05D006945 4.6e-59 233.0 246 64.2
Duzib147G0933 Durio zibethinus HOM05D005949 ORTHO05D006945 1.8e-55 221.1 325 38.5
Mapoly0062s0069 Marchantia polymorpha HOM05D005949 ORTHO05D006945 3.1e-55 220.3 430 37.2
CBR_g20407 Chara braunii HOM05D005949 ORTHO05D006945 2.6e-54 217.2 414 45.9
CBR_g20410 Chara braunii HOM05D005949 ORTHO05D006945 2.4e-52 210.7 411 45.5
AagrBONN_evm.TU.Sc2ySwM_117.2156 Anthoceros agrestis HOM05D005949 ORTHO05D006945 9.9e-46 188.7 425 42.1
CSS0020931 Camellia sinensis var. sinensis HOM05D005949 ORTHO05D006945 3.2e-44 183.7 159 54.1
AL7G15200 Arabidopsis lyrata HOM05D005949 ORTHO05D006945 1.8e-39 167.9 220 40.9
Psat1g081720 Pisum sativum HOM05D005949 ORTHO05D006945 1.2e-38 165.2 242 38.4
MBI10_g15883_MAGBIO Magnolia biondii HOM05D005949 ORTHO05D006945 2.0e-38 164.5 112 71.4
MBI10_g37260_MAGBIO Magnolia biondii HOM05D005949 ORTHO05D006945 2.2e-37 161.0 211 56.9
Sc07g0004380 Simmondsia chinensis HOM05D005949 ORTHO05D006945 3.7e-32 143.7 130 51.5
Actinidia36134 Actinidia chinensis HOM05D005949 ORTHO05D006945 4.1e-31 140.2 112 58.0
CAN.G370.99 Capsicum annuum HOM05D000140 ORTHO05D000087 2.2e-29 134.4 109 60.6
MD09G1021100 Malus domestica HOM05D005949 ORTHO05D006945 2.9e-29 134.0 114 51.8
CAN.G479.6 Capsicum annuum HOM05D005949 ORTHO05D006945 1.4e-28 131.7 211 37.4
Actinidia05972 Actinidia chinensis HOM05D005088 ORTHO05D006914 3.0e-26 124.0 197 36.0
Zm00001eb120940 Zea mays HOM05D005949 ORTHO05D006945 2.2e-24 117.9 131 48.1
Sp7g33630 Schrenkiella parvula HOM05D005949 ORTHO05D006945 1.8e-23 114.8 104 54.8
Psat1g081680 Pisum sativum HOM05D005949 ORTHO05D006945 6.9e-23 112.8 93 57.0
SHI03793 Sapria himalayana HOM05D005949 ORTHO05D006945 1.5e-22 111.7 72 70.8
Hma1.2p1_0818F.1_g223360 Hydrangea macrophylla HOM05D005949 ORTHO05D006945 4.5e-22 110.2 101 51.5
CAN.G1258.5 Capsicum annuum HOM05D005949 ORTHO05D006945 1.7e-21 108.2 77 63.6
CAN.G15.16 Capsicum annuum HOM05D005949 ORTHO05D006945 1.1e-15 89.0 57 73.7
CDE04G3731 Ceratophyllum demersum HOM05D005949 ORTHO05D006945 9.4e-12 75.9 67 53.7
MBI07_g20478_MAGBIO Magnolia biondii HOM05D000141 ORTHO05D001968 1.1e-09 68.9 49 69.4
CAN.G153.13 Capsicum annuum HOM05D001265 ORTHO05D006945 3.3e-09 67.4 44 65.9
Sc07g0004370 Simmondsia chinensis HOM05D005949 ORTHO05D006945 1.3e-08 65.5 64 51.6
CAN.G2149.1 Capsicum annuum HOM05D001265 ORTHO05D006945 8.2e-08 62.8 38 73.7
CAN.G898.5 Capsicum annuum HOM05D005949 ORTHO05D006945 2.4e-07 61.2 40 70.0
CAN.G1258.4 Capsicum annuum HOM05D005949 ORTHO05D006945 4.1e-07 60.5 38 71.1
Cpa.g.sc130.69 Carica papaya HOM05D005949 ORTHO05D006945 9.1e-07 59.3 58 44.8
CAN.G1086.1 Capsicum annuum HOM05D005949 ORTHO05D006945 2.0e-06 58.2 40 67.5
MBI10_g15884_MAGBIO Magnolia biondii HOM05D045841 ORTHO05D006945 4.5e-06 57.0 75 41.3


User provided reference genes

Program Settings