Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SEGI_29496 Sequoiadendron giganteum HOM05D005837 ORTHO05D007594 2.9e-227 791.6 406 100.0
Nn5g30122 Nelumbo nucifera HOM05D005837 ORTHO05D007594 1.7e-110 403.7 300 73.3
TAR376G0564 Trochodendron aralioides HOM05D005837 ORTHO05D007594 1.4e-109 400.6 300 71.3
ATR0118G022 Amborella trichopoda HOM05D005837 ORTHO05D007594 5.5e-109 398.7 285 74.7
MBI05_g19355_MAGBIO Magnolia biondii HOM05D005837 ORTHO05D007594 5.5e-109 398.7 300 72.3
PSO447G0182 Papaver somniferum HOM05D005837 ORTHO05D007594 9.4e-109 397.9 300 71.7
PSO210G6484 Papaver somniferum HOM05D005837 ORTHO05D007594 2.7e-108 396.4 299 71.6
Gorai.007G060800 Gossypium raimondii HOM05D005837 ORTHO05D007594 7.9e-108 394.8 300 70.3
Duzib264G0353 Durio zibethinus HOM05D005837 ORTHO05D007594 2.3e-107 393.3 300 70.3
Rhsim08G0010400 Rhododendron simsii HOM05D005837 ORTHO05D007594 3.0e-107 392.9 285 73.7
Duzib147G0987 Durio zibethinus HOM05D005837 ORTHO05D007594 3.9e-107 392.5 300 70.3
Gohir.D11G055600 Gossypium hirsutum HOM05D005837 ORTHO05D007594 3.9e-107 392.5 300 70.0
Glyma.08G135800 Glycine max HOM05D005837 ORTHO05D007594 8.8e-107 391.3 300 70.0
VMungo0251G2060 Vigna mungo HOM05D005837 ORTHO05D007594 8.8e-107 391.3 300 69.3
CSS0040315 Camellia sinensis var. sinensis HOM05D005837 ORTHO05D007594 2.0e-106 390.2 300 70.0
Gohir.D11G221614 Gossypium hirsutum HOM05D005837 ORTHO05D007594 2.0e-106 390.2 300 70.0
Thecc.01G101500 Theobroma cacao HOM05D005837 ORTHO05D007594 2.0e-106 390.2 285 72.6
Aa31LG1G16930 Aethionema arabicum HOM05D005837 ORTHO05D007594 3.3e-106 389.4 282 73.4
Phvul.002G256000 Phaseolus vulgaris HOM05D005837 ORTHO05D007594 3.3e-106 389.4 300 69.3
Gorai.007G238700 Gossypium raimondii HOM05D005837 ORTHO05D007594 4.3e-106 389.0 300 69.7
BraA09t36542Z Brassica rapa HOM05D005837 ORTHO05D007594 5.7e-106 388.7 283 72.8
THA.LOC104798971 Tarenaya hassleriana HOM05D005837 ORTHO05D007594 5.7e-106 388.7 297 70.4
Aqoxy5G01893 Aquilegia oxysepala HOM05D005837 ORTHO05D007594 9.7e-106 387.9 295 71.5
Potri.005G075600 Populus trichocarpa HOM05D005837 ORTHO05D007594 9.7e-106 387.9 300 69.3
Sp2g28080 Schrenkiella parvula HOM05D005837 ORTHO05D007594 1.3e-105 387.5 282 73.4
A06p31820 Brassica napus HOM05D005837 ORTHO05D007594 1.7e-105 387.1 283 72.8
BraA06t26113Z Brassica rapa HOM05D005837 ORTHO05D007594 1.7e-105 387.1 283 73.1
Hma1.2p1_0047F.1_g027810 Hydrangea macrophylla HOM05D005837 ORTHO05D007594 1.7e-105 387.1 300 70.0
BcaC01g02731 Brassica carinata HOM05D005837 ORTHO05D007594 2.2e-105 386.7 283 73.1
C03p61190 Brassica napus HOM05D005837 ORTHO05D007594 2.2e-105 386.7 283 73.1
BolC3t18379H Brassica oleracea HOM05D005837 ORTHO05D007594 2.2e-105 386.7 283 73.1
GSVIVG01002467001 Vitis vinifera HOM05D005837 ORTHO05D007594 2.2e-105 386.7 300 70.0
CARHR293770 Cardamine hirsuta HOM05D005837 ORTHO05D007594 2.8e-105 386.3 282 74.1
BcaB02g09852 Brassica carinata HOM05D005837 ORTHO05D007594 3.7e-105 386.0 282 73.0
BcaB02g09853 Brassica carinata HOM05D005837 ORTHO05D007594 3.7e-105 386.0 282 73.0
Gohir.A11G201400 Gossypium hirsutum HOM05D005837 ORTHO05D007594 3.7e-105 386.0 300 69.3
Sc16g0005040 Simmondsia chinensis HOM05D005837 ORTHO05D007594 3.7e-105 386.0 300 70.3
Actinidia28865 Actinidia chinensis HOM05D005837 ORTHO05D007594 4.8e-105 385.6 285 73.3
BcaB04g20002 Brassica carinata HOM05D005837 ORTHO05D007594 4.8e-105 385.6 282 72.3
HPP92_016352 Vanilla planifolia HOM05D005837 ORTHO05D007594 4.8e-105 385.6 283 74.6
A09p08910 Brassica napus HOM05D005837 ORTHO05D007594 6.3e-105 385.2 283 72.4
FvH4_1g20890 Fragaria vesca HOM05D005837 ORTHO05D007594 6.3e-105 385.2 300 69.7
BolC9t53935H Brassica oleracea HOM05D005837 ORTHO05D007594 8.2e-105 384.8 284 72.5
Lj4g0008298 Lotus japonicus HOM05D005837 ORTHO05D007594 8.2e-105 384.8 285 73.0
TPR.G6228 Trifolium pratense HOM05D005837 ORTHO05D007594 8.2e-105 384.8 285 72.3
COL.COLO4_09964 Corchorus olitorius HOM05D005837 ORTHO05D007594 1.1e-104 384.4 297 69.0
Thhalv10004589m.g Eutrema salsugineum HOM05D005837 ORTHO05D007594 1.1e-104 384.4 282 73.0
Carub.0008s2584 Capsella rubella HOM05D005837 ORTHO05D007594 2.4e-104 383.3 282 72.7
arahy.Tifrunner.gnm1.ann1.UTAL3L Arachis hypogaea HOM05D005837 ORTHO05D007594 3.1e-104 382.9 281 73.7
MD01G1029800 Malus domestica HOM05D005837 ORTHO05D007594 3.1e-104 382.9 300 68.0
MD15G1324100 Malus domestica HOM05D005837 ORTHO05D007594 4.1e-104 382.5 285 71.6
Lalb_Chr07g0185181 Lupinus albus HOM05D005837 ORTHO05D007594 5.3e-104 382.1 300 69.7
QL06p049517 Quercus lobata HOM05D005837 ORTHO05D007594 5.3e-104 382.1 297 68.4
AL8G42500 Arabidopsis lyrata HOM05D005837 ORTHO05D007594 6.9e-104 381.7 282 73.0
RcHm_v2.0_Chr2g0113501 Rosa chinensis HOM05D005837 ORTHO05D007594 6.9e-104 381.7 300 69.0
BcaC04g23271 Brassica carinata HOM05D005837 ORTHO05D007594 9.1e-104 381.3 284 71.8
C09p10350 Brassica napus HOM05D005837 ORTHO05D007594 9.1e-104 381.3 284 71.8
Medtr8g090230 Medicago truncatula HOM05D005837 ORTHO05D007594 9.1e-104 381.3 300 68.0
Prupe.6G187000 Prunus persica HOM05D005837 ORTHO05D007594 1.2e-103 380.9 282 72.3
Solyc05g051590.3 Solanum lycopersicum HOM05D005837 ORTHO05D007594 1.2e-103 380.9 297 68.7
Sabra05G0062100 Salix brachista HOM05D005837 ORTHO05D007594 1.5e-103 380.6 300 69.0
Sopen05g030040 Solanum pennellii HOM05D005837 ORTHO05D007594 1.5e-103 380.6 297 68.7
PGSC0003DMG400007222 Solanum tuberosum HOM05D005837 ORTHO05D007594 2.0e-103 380.2 297 68.7
SGA_v2.0_scaffold34G13592 Striga asiatica HOM05D005837 ORTHO05D007594 2.6e-103 379.8 297 68.7
AT5G65000 Arabidopsis thaliana HOM05D005837 ORTHO05D007594 4.5e-103 379.0 282 72.3
MSTRG.15711 Avicennia marina HOM05D005837 ORTHO05D007594 5.9e-103 378.6 285 71.6
ECA232G4987 Erigeron canadensis HOM05D005837 ORTHO05D007594 5.9e-103 378.6 285 70.5
SalBow5G3973 Salvia bowleyana HOM05D005837 ORTHO05D007594 1.0e-102 377.9 300 67.3
SalBow5G4805 Salvia bowleyana HOM05D005837 ORTHO05D007594 1.0e-102 377.9 300 67.3
CANSAT01G1018 Cannabis sativa HOM05D005837 ORTHO05D007594 1.3e-102 377.5 282 70.9
HanXRQChr09g0260241 Helianthus annuus HOM05D005837 ORTHO05D007594 1.3e-102 377.5 285 70.2
TWI53G1711 Tripterygium wilfordii HOM05D005837 ORTHO05D007594 1.3e-102 377.5 285 71.2
Lsat_1_v5_gn_4_141261 Lactuca sativa HOM05D005837 ORTHO05D007594 2.2e-102 376.7 285 71.2
Atru.chr4.64 Acer truncatum HOM05D005837 ORTHO05D007594 2.9e-102 376.3 300 67.7
Migut.L00122 Erythranthe guttata HOM05D005837 ORTHO05D007594 3.8e-102 375.9 300 68.3
Ca_17737_v3 Cicer arietinum L. HOM05D005837 ORTHO05D007594 5.0e-102 375.6 285 70.9
PGR102G0026 Punica granatum HOM05D005837 ORTHO05D007594 5.0e-102 375.6 285 70.5
Eucgr.H04785 Eucalyptus grandis HOM05D005837 ORTHO05D007594 6.5e-102 375.2 285 70.5
HanXRQChr10g0305351 Helianthus annuus HOM05D005837 ORTHO05D007594 6.5e-102 375.2 297 67.3
Manes.12G134900 Manihot esculenta HOM05D005837 ORTHO05D007594 6.5e-102 375.2 272 72.1
CiPaw.04G099500 Carya illinoinensis HOM05D005837 ORTHO05D007594 1.4e-101 374.0 300 66.7
Ciclev10025805m.g Citrus clementina HOM05D005837 ORTHO05D007594 1.4e-101 374.0 282 71.3
TWI77G0214 Tripterygium wilfordii HOM05D005837 ORTHO05D007594 1.4e-101 374.0 300 67.0
DCAR_014225 Daucus carota HOM05D005837 ORTHO05D007594 1.9e-101 373.6 300 66.3
FAN28G0473 Fragaria x ananassa HOM05D005837 ORTHO05D007594 4.2e-101 372.5 300 68.7
Gohir.A11G052200 Gossypium hirsutum HOM05D005837 ORTHO05D007594 2.1e-100 370.2 299 66.9
MELO3C007756.2 Cucumis melo HOM05D005837 ORTHO05D007594 2.7e-100 369.8 297 66.7
CSS0022010 Camellia sinensis var. sinensis HOM05D005837 ORTHO05D007594 3.6e-100 369.4 300 67.0
Cfa002663 Carpinus fangiana HOM05D005837 ORTHO05D007594 8.8e-99 364.8 300 65.0
FAN23G0829 Fragaria x ananassa HOM05D005837 ORTHO05D007594 8.8e-99 364.8 340 61.2
Ah.03g143560 Amaranthus hybridus HOM05D005837 ORTHO05D007594 1.1e-98 364.4 300 65.0
AUR62002009 Chenopodium quinoa HOM05D005837 ORTHO05D007594 2.6e-98 363.2 294 67.3
FAN26G1738 Fragaria x ananassa HOM05D005837 ORTHO05D007594 1.3e-97 360.9 351 59.5
SMO169G0194 Selaginella moellendorffii HOM05D005837 ORTHO05D007594 1.5e-95 354.0 297 62.3
ClCG01G018760 Citrullus lanatus HOM05D005837 ORTHO05D007594 3.5e-95 352.8 295 66.4
Zm00001eb244760 Zea mays HOM05D005837 ORTHO05D007594 1.0e-94 351.3 297 66.3
unitig_32.g10697 Utricularia gibba HOM05D005837 ORTHO05D007594 2.2e-94 350.1 285 64.9
Hund16285 Selenicereus undatus HOM05D005837 ORTHO05D007594 3.8e-94 349.4 304 63.8
Sed0019406 Sechium edule HOM05D005837 ORTHO05D007594 6.5e-94 348.6 282 66.3
CsaV3_6G045430 Cucumis sativus L. HOM05D005837 ORTHO05D007594 8.5e-94 348.2 280 67.1
Peaxi162Scf00295g01018 Petunia axillaris HOM05D005837 ORTHO05D007594 1.4e-93 347.4 297 64.0
EL10Ac6g15104 Beta vulgaris HOM05D005837 ORTHO05D007594 2.5e-93 346.7 300 62.7
Nitab4.5_0000715g0030 Nicotiana tabacum HOM05D005837 ORTHO05D007594 2.5e-93 346.7 283 66.4
Actinidia28231 Actinidia chinensis HOM05D005837 ORTHO05D007594 5.2e-91 339.0 246 74.4
Nitab4.5_0006967g0030 Nicotiana tabacum HOM05D005837 ORTHO05D007594 7.4e-90 335.1 296 62.5
Lj4A891G48 Lonicera japonica HOM05D005837 ORTHO05D007594 1.8e-88 330.5 246 71.5
Oeu053549.4 Olea europaea HOM05D005837 ORTHO05D007594 4.1e-88 329.3 297 62.3
SHI29446 Sapria himalayana HOM05D005837 ORTHO05D007594 9.1e-88 328.2 285 62.8
Zm00001eb182830 Zea mays HOM05D005837 ORTHO05D007594 9.1e-88 328.2 310 60.3
Pp3c3_32740 Physcomitrium patens HOM05D005837 ORTHO05D007594 1.2e-87 327.8 301 59.1
Haze_24932 Corylus avellana HOM05D005837 ORTHO05D007594 1.9e-85 320.5 382 50.8
AUR62003793 Chenopodium quinoa HOM05D005837 ORTHO05D007594 2.5e-85 320.1 300 60.0
Mapoly0120s0005 Marchantia polymorpha HOM05D005837 ORTHO05D007594 1.2e-84 317.8 252 65.1
FAN19G3104 Fragaria x ananassa HOM05D005837 ORTHO05D007594 2.7e-84 316.6 246 68.7
Cc07_g15220 Coffea canephora HOM05D005837 ORTHO05D007594 1.8e-83 313.9 231 72.3
Dinv13188 Davidia involucrata HOM05D005837 ORTHO05D007594 1.0e-75 288.1 210 72.4
Dinv21909 Davidia involucrata HOM05D005837 ORTHO05D007594 1.4e-75 287.7 225 68.0
Potri.007G092800 Populus trichocarpa HOM05D005837 ORTHO05D007594 2.0e-74 283.9 224 66.1
Psat7g054880 Pisum sativum HOM05D005837 ORTHO05D007594 5.7e-74 282.3 205 71.2
CBR_g39403 Chara braunii HOM05D005837 ORTHO05D007594 1.8e-72 277.3 303 50.5
AagrBONN_evm.TU.Sc2ySwM_117.3229 Anthoceros agrestis HOM05D005837 ORTHO05D007594 3.0e-54 216.9 226 54.4
CDE10G0517 Ceratophyllum demersum HOM05D005837 ORTHO05D007594 2.3e-51 207.2 230 52.6
vmacro18603 Vaccinium macrocarpon HOM05D005837 ORTHO05D007594 3.3e-45 186.8 139 69.8
Oeu002173.1 Olea europaea HOM05D005837 ORTHO05D007594 2.2e-41 174.1 296 40.2
RcHm_v2.0_Chr3g0453281 Rosa chinensis HOM05D005837 ORTHO05D007594 5.4e-40 169.5 196 53.6
RcHm_v2.0_Chr3g0467111 Rosa chinensis HOM05D005837 ORTHO05D007594 2.3e-38 164.1 160 61.2
MCO05G725 Micromonas commoda HOM05D005837 ORTHO05D007594 1.5e-34 151.4 267 41.2
MBI10_g33306_MAGBIO Magnolia biondii HOM05D000934 ORTHO05D000746 2.1e-31 141.0 117 65.0
CAN.G151.30 Capsicum annuum HOM05D005837 ORTHO05D007594 1.9e-29 134.4 91 75.8
Os02g0573300 Oryza sativa ssp. japonica HOM05D005837 ORTHO05D007594 3.2e-24 117.1 107 59.8
MBI10_g27985_MAGBIO Magnolia biondii HOM05D000934 ORTHO05D000746 3.5e-23 113.6 115 56.5
vmacro18602 Vaccinium macrocarpon HOM05D005837 ORTHO05D024186 3.3e-21 107.1 76 75.0
Cc07_g15210 Coffea canephora HOM05D005837 ORTHO05D024186 1.1e-11 75.5 54 72.2
Haze_26352 Corylus avellana HOM05D001098 ORTHO05D034890 1.4e-11 75.1 267 26.2
Haze_26763 Corylus avellana HOM05D001098 ORTHO05D034890 3.4e-10 70.5 304 25.7
Glyma.02G312000 Glycine max HOM05D001098 ORTHO05D002527 9.3e-08 62.4 282 25.9
Hma1.2p1_0032F.1_g018710 Hydrangea macrophylla HOM05D001098 ORTHO05D002527 9.3e-08 62.4 322 23.0
Sopen11g004380 Solanum pennellii HOM05D001098 ORTHO05D002527 9.3e-08 62.4 278 24.8
SEGI_11233 Sequoiadendron giganteum HOM05D001098 ORTHO05D002527 1.2e-07 62.0 303 25.7
Solyc11g008590.2 Solanum lycopersicum HOM05D001098 ORTHO05D002527 1.6e-07 61.6 278 25.2
PGSC0003DMG400016250 Solanum tuberosum HOM05D001098 ORTHO05D002527 1.6e-07 61.6 278 25.2
Glyma.14G000600 Glycine max HOM05D001098 ORTHO05D002527 2.1e-07 61.2 282 25.5
CiPaw.06G114700 Carya illinoinensis HOM05D001098 ORTHO05D002527 2.7e-07 60.8 277 23.8
Manes.02G204100 Manihot esculenta HOM05D001098 ORTHO05D002527 4.6e-07 60.1 236 25.4
Ca_06505_v3 Cicer arietinum L. HOM05D001098 ORTHO05D002527 1.0e-06 58.9 277 23.8
TWI79G1444 Tripterygium wilfordii HOM05D001098 ORTHO05D002527 1.0e-06 58.9 276 25.4
CBR_g38158 Chara braunii HOM05D001098 ORTHO05D000301 1.3e-06 58.5 229 26.6
Phvul.008G292800 Phaseolus vulgaris HOM05D001098 ORTHO05D002527 1.3e-06 58.5 281 24.6
Haze_10071 Corylus avellana HOM05D001098 ORTHO05D002527 1.8e-06 58.2 277 23.8
SMO118G0063 Selaginella moellendorffii HOM05D001098 ORTHO05D002527 1.8e-06 58.2 280 25.7
CANSAT25G0204 Cannabis sativa HOM05D001098 ORTHO05D002527 2.3e-06 57.8 236 24.6
COL.COLO4_34319 Corchorus olitorius HOM05D001098 ORTHO05D002527 2.3e-06 57.8 276 25.4
MCO17G012 Micromonas commoda HOM05D001098 ORTHO05D034890 2.3e-06 57.8 231 22.9
Ah.01g017660 Amaranthus hybridus HOM05D001098 ORTHO05D002527 3.0e-06 57.4 277 24.2
Gohir.A04G111700 Gossypium hirsutum HOM05D001098 ORTHO05D002527 3.0e-06 57.4 277 24.2
Medtr5g099280 Medicago truncatula HOM05D001098 ORTHO05D002527 3.0e-06 57.4 226 25.2
Gohir.D04G152000 Gossypium hirsutum HOM05D001098 ORTHO05D002527 3.9e-06 57.0 277 24.2
MSTRG.16957 Avicennia marina HOM05D001098 ORTHO05D002527 5.1e-06 56.6 278 24.5
CSS0035199 Camellia sinensis var. sinensis HOM05D001098 ORTHO05D002527 5.1e-06 56.6 267 24.7
MELO3C013485.2 Cucumis melo HOM05D001098 ORTHO05D002527 5.1e-06 56.6 226 24.8
RcHm_v2.0_Chr6g0281071 Rosa chinensis HOM05D001098 ORTHO05D002527 5.1e-06 56.6 236 24.2
CAN.G321.15 Capsicum annuum HOM05D001098 ORTHO05D002527 6.7e-06 56.2 289 24.6
CiPaw.05G093900 Carya illinoinensis HOM05D001098 ORTHO05D002527 6.7e-06 56.2 237 25.3
Gorai.012G138800 Gossypium raimondii HOM05D001098 ORTHO05D002527 6.7e-06 56.2 277 24.2
Lalb_Chr10g0107701 Lupinus albus HOM05D001098 ORTHO05D002527 6.7e-06 56.2 277 23.1
Manes.18G113200 Manihot esculenta HOM05D001098 ORTHO05D002527 6.7e-06 56.2 276 24.6
Sed0023457 Sechium edule HOM05D001098 ORTHO05D002527 6.7e-06 56.2 276 24.3
TWI75G1677 Tripterygium wilfordii HOM05D001098 ORTHO05D002527 6.7e-06 56.2 277 25.3
ClCG02G010830 Citrullus lanatus HOM05D001098 ORTHO05D002527 8.7e-06 55.8 276 24.3
CsaV3_6G010050 Cucumis sativus L. HOM05D001098 ORTHO05D002527 8.7e-06 55.8 276 24.3
Psat2g000520 Pisum sativum HOM05D001098 ORTHO05D002527 8.7e-06 55.8 276 25.0
Thecc.02G147100 Theobroma cacao HOM05D001098 ORTHO05D002527 8.7e-06 55.8 277 23.8
GSVIVG01023864001 Vitis vinifera HOM05D001098 ORTHO05D002527 8.7e-06 55.8 226 25.2


User provided reference genes

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