Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SEGI_29407 Sequoiadendron giganteum HOM05D004632 ORTHO05D005556 1.3e-91 339.7 168 100.0
FAN27G1200 Fragaria x ananassa HOM05D004632 ORTHO05D005556 4.5e-25 118.6 98 54.1
Ah.05g177560 Amaranthus hybridus HOM05D004632 ORTHO05D005556 1.2e-22 110.5 87 62.1
Dinv40981 Davidia involucrata HOM05D004632 ORTHO05D005556 1.2e-22 110.5 78 62.8
Oeu013659.1 Olea europaea HOM05D004632 ORTHO05D005556 6.1e-22 108.2 79 60.8
Lj7A732T26 Lonicera japonica HOM05D004632 ORTHO05D005556 3.4e-20 102.4 89 55.1
Glyma.04G061600 Glycine max HOM05D004632 ORTHO05D005556 7.5e-20 101.3 93 55.9
CAN.G199.61 Capsicum annuum HOM05D004632 ORTHO05D005556 1.3e-19 100.5 70 61.4
Lj1g0022186 Lotus japonicus HOM05D004632 ORTHO05D005556 3.7e-19 99.0 86 53.5
EL10Ac1g00704 Beta vulgaris HOM05D004632 ORTHO05D005556 6.3e-19 98.2 67 65.7
Zm00001eb388650 Zea mays HOM05D004632 ORTHO05D005556 6.3e-19 98.2 87 51.7
Medtr3g106080 Medicago truncatula HOM05D004632 ORTHO05D005556 8.3e-19 97.8 69 63.8
Gohir.D05G060932 Gossypium hirsutum HOM05D004632 ORTHO05D005556 1.1e-18 97.4 70 61.4
Cpa.g.sc127.22 Carica papaya HOM05D004632 ORTHO05D005556 1.4e-18 97.1 74 60.8
Solyc06g065700.3 Solanum lycopersicum HOM05D004632 ORTHO05D005556 1.8e-18 96.7 68 60.3
Sopen06g024220 Solanum pennellii HOM05D004632 ORTHO05D005556 1.8e-18 96.7 68 60.3
Psat5g032640 Pisum sativum HOM05D004632 ORTHO05D005556 2.4e-18 96.3 69 62.3
Aqoxy7G03810 Aquilegia oxysepala HOM05D004632 ORTHO05D005556 3.1e-18 95.9 91 54.9
Glyma.06G062300 Glycine max HOM05D004632 ORTHO05D005556 4.1e-18 95.5 64 65.6
Phvul.009G087600 Phaseolus vulgaris HOM05D004632 ORTHO05D005556 4.1e-18 95.5 69 62.3
Thecc.09G016800 Theobroma cacao HOM05D004632 ORTHO05D005556 4.1e-18 95.5 70 62.9
Zm00001eb259920 Zea mays HOM05D004632 ORTHO05D005556 4.1e-18 95.5 87 50.6
CSS0008139 Camellia sinensis var. sinensis HOM05D004632 ORTHO05D005556 5.4e-18 95.1 69 60.9
CiPaw.07G229300 Carya illinoinensis HOM05D004632 ORTHO05D005556 5.4e-18 95.1 76 60.5
Nn8g39852 Nelumbo nucifera HOM05D004632 ORTHO05D005556 5.4e-18 95.1 69 63.8
Os06g0649500 Oryza sativa ssp. japonica HOM05D004632 ORTHO05D005556 9.2e-18 94.4 87 50.6
Hund27424 Selenicereus undatus HOM05D004632 ORTHO05D005556 9.2e-18 94.4 80 57.5
Hma1.2p1_0059F.1_g032640 Hydrangea macrophylla HOM05D004632 ORTHO05D005556 1.2e-17 94.0 67 61.2
Duzib168G2284 Durio zibethinus HOM05D004632 ORTHO05D005556 1.6e-17 93.6 66 60.6
Gohir.A07G031900 Gossypium hirsutum HOM05D004632 ORTHO05D005556 1.6e-17 93.6 67 64.2
Gorai.001G037500 Gossypium raimondii HOM05D004632 ORTHO05D005556 1.6e-17 93.6 67 64.2
HanXRQChr03g0084861 Helianthus annuus HOM05D004632 ORTHO05D005556 1.6e-17 93.6 92 47.8
PSO063G4867 Papaver somniferum HOM05D004632 ORTHO05D005556 1.6e-17 93.6 67 64.2
Peaxi162Scf00430g00519 Petunia axillaris HOM05D004632 ORTHO05D005556 1.6e-17 93.6 67 58.2
Phvul.001G042300 Phaseolus vulgaris HOM05D004632 ORTHO05D005556 1.6e-17 93.6 68 61.8
TAR626G1191 Trochodendron aralioides HOM05D004632 ORTHO05D005556 1.6e-17 93.6 69 59.4
ATR0739G094 Amborella trichopoda HOM05D004632 ORTHO05D005556 2.0e-17 93.2 68 61.8
Ca_15774_v3 Cicer arietinum L. HOM05D004632 ORTHO05D005556 2.0e-17 93.2 69 60.9
FvH4_2g41020 Fragaria vesca HOM05D004632 ORTHO05D005556 2.0e-17 93.2 86 48.8
Glyma.17G222200 Glycine max HOM05D004632 ORTHO05D005556 2.0e-17 93.2 68 63.2
PSO782G2171 Papaver somniferum HOM05D004632 ORTHO05D005556 2.0e-17 93.2 63 66.7
CSS0046974 Camellia sinensis var. sinensis HOM05D004632 ORTHO05D005556 2.7e-17 92.8 107 43.0
FAN20G0152 Fragaria x ananassa HOM05D004632 ORTHO05D005556 2.7e-17 92.8 67 61.2
FAN20G1191 Fragaria x ananassa HOM05D004632 ORTHO05D005556 2.7e-17 92.8 67 61.2
Lsat_1_v5_gn_7_4261 Lactuca sativa HOM05D004632 ORTHO05D005556 2.7e-17 92.8 87 54.0
Potri.006G263400 Populus trichocarpa HOM05D004632 ORTHO05D005556 2.7e-17 92.8 69 62.3
vmacro11252 Vaccinium macrocarpon HOM05D004632 ORTHO05D005556 2.7e-17 92.8 69 59.4
Prupe.1G392800 Prunus persica HOM05D004632 ORTHO05D005556 3.5e-17 92.4 67 62.7
VMungo1309G0882 Vigna mungo HOM05D004632 ORTHO05D005556 3.5e-17 92.4 67 62.7
Haze_21427 Corylus avellana HOM05D004632 ORTHO05D005556 4.5e-17 92.0 67 64.2
Gohir.D07G035600 Gossypium hirsutum HOM05D004632 ORTHO05D005556 4.5e-17 92.0 151 37.7
Manes.16G128700 Manihot esculenta HOM05D004632 ORTHO05D005556 4.5e-17 92.0 69 60.9
Rhsim02G0214000 Rhododendron simsii HOM05D004632 ORTHO05D005556 4.5e-17 92.0 69 58.0
TPR.G1835 Trifolium pratense HOM05D004632 ORTHO05D005556 4.5e-17 92.0 60 66.7
HPP92_014401 Vanilla planifolia HOM05D004632 ORTHO05D005556 4.5e-17 92.0 87 49.4
CARHR188340 Cardamine hirsuta HOM05D004632 ORTHO05D005556 5.9e-17 91.7 79 54.4
AUR62023356 Chenopodium quinoa HOM05D004632 ORTHO05D005556 5.9e-17 91.7 97 49.5
arahy.Tifrunner.gnm1.ann1.8PBG0P Arachis hypogaea HOM05D004632 ORTHO05D005556 7.7e-17 91.3 86 48.8
A02p39940 Brassica napus HOM05D004632 ORTHO05D005556 7.7e-17 91.3 79 55.7
BraA02t08956Z Brassica rapa HOM05D004632 ORTHO05D005556 7.7e-17 91.3 79 55.7
TWI32G0830 Tripterygium wilfordii HOM05D004632 ORTHO05D005556 7.7e-17 91.3 69 58.0
GSVIVG01035887001 Vitis vinifera HOM05D004632 ORTHO05D005556 7.7e-17 91.3 69 60.9
Aa31LG11G4400 Aethionema arabicum HOM05D004632 ORTHO05D005556 1.0e-16 90.9 66 60.6
AUR62013801 Chenopodium quinoa HOM05D004632 ORTHO05D005556 1.0e-16 90.9 89 52.8
SGA_v2.0_scaffold40G15680 Striga asiatica HOM05D004632 ORTHO05D005556 1.0e-16 90.9 59 66.1
Actinidia22297 Actinidia chinensis HOM05D004632 ORTHO05D005556 1.3e-16 90.5 68 60.3
Sabra06G0205900 Salix brachista HOM05D004632 ORTHO05D005556 1.3e-16 90.5 59 66.1
C02p59830 Brassica napus HOM05D004632 ORTHO05D005556 1.7e-16 90.1 61 63.9
BolC2t12041H Brassica oleracea HOM05D004632 ORTHO05D005556 1.7e-16 90.1 61 63.9
Gohir.A05G058900 Gossypium hirsutum HOM05D004632 ORTHO05D005556 1.7e-16 90.1 88 52.3
Lsat_1_v5_gn_6_77900 Lactuca sativa HOM05D004632 ORTHO05D005556 1.7e-16 90.1 88 53.4
Potri.018G020200 Populus trichocarpa HOM05D004632 ORTHO05D005556 1.7e-16 90.1 69 60.9
MSTRG.4644 Avicennia marina HOM05D004632 ORTHO05D005556 2.9e-16 89.4 67 59.7
Eucgr.C02661 Eucalyptus grandis HOM05D004632 ORTHO05D005556 2.9e-16 89.4 69 55.1
Lalb_Chr23g0268241 Lupinus albus HOM05D004632 ORTHO05D005556 2.9e-16 89.4 69 59.4
VMungo0647G2075 Vigna mungo HOM05D004632 ORTHO05D005556 2.9e-16 89.4 67 62.7
MBI15_g05236_MAGBIO Magnolia biondii HOM05D004632 ORTHO05D005556 3.8e-16 89.0 87 48.3
AT5G25150 Arabidopsis thaliana HOM05D004632 ORTHO05D005556 5.0e-16 88.6 82 53.7
arahy.Tifrunner.gnm1.ann1.21LKMJ Arachis hypogaea HOM05D004632 ORTHO05D005556 5.0e-16 88.6 69 59.4
Dinv34967 Davidia involucrata HOM05D004632 ORTHO05D005556 5.0e-16 88.6 69 55.1
MD00G1143300 Malus domestica HOM05D004632 ORTHO05D005556 5.0e-16 88.6 67 61.2
RcHm_v2.0_Chr6g0299541 Rosa chinensis HOM05D004632 ORTHO05D005556 5.0e-16 88.6 78 53.8
BcaC03g17924 Brassica carinata HOM05D004632 ORTHO05D005556 6.6e-16 88.2 51 72.5
Mapoly0009s0169 Marchantia polymorpha HOM05D004632 ORTHO05D005556 6.6e-16 88.2 53 73.6
PGR042G1415 Punica granatum HOM05D004632 ORTHO05D005556 1.1e-15 87.4 89 50.6
BcaB04g19812 Brassica carinata HOM05D004632 ORTHO05D005556 1.5e-15 87.0 82 51.2
MD15G1039000 Malus domestica HOM05D004632 ORTHO05D005556 1.5e-15 87.0 52 73.1
Sed0004025 Sechium edule HOM05D004632 ORTHO05D005556 1.9e-15 86.7 58 63.8
ClCG05G016370 Citrullus lanatus HOM05D004632 ORTHO05D005556 2.5e-15 86.3 54 68.5
ECA240G3507 Erigeron canadensis HOM05D004632 ORTHO05D005556 3.3e-15 85.9 91 47.3
DCAR_015265 Daucus carota HOM05D004632 ORTHO05D005556 4.3e-15 85.5 55 65.5
Ciclev10007613m.g Citrus clementina HOM05D004632 ORTHO05D005556 5.6e-15 85.1 66 60.6
Cc09_g08590 Coffea canephora HOM05D004632 ORTHO05D005556 5.6e-15 85.1 53 67.9
Sp2g22380 Schrenkiella parvula HOM05D004632 ORTHO05D005556 5.6e-15 85.1 90 46.7
MELO3C016968.2 Cucumis melo HOM05D004632 ORTHO05D005556 7.3e-15 84.7 54 66.7
CsaV3_4G036640 Cucumis sativus L. HOM05D004632 ORTHO05D005556 7.3e-15 84.7 54 66.7
MSTRG.9370 Avicennia marina HOM05D004632 ORTHO05D005556 1.2e-14 84.0 66 57.6
Migut.N00603 Erythranthe guttata HOM05D004632 ORTHO05D005556 1.2e-14 84.0 86 44.2
Atru.chr7.2537 Acer truncatum HOM05D004632 ORTHO05D005556 2.1e-14 83.2 68 54.4
THA.LOC104814991 Tarenaya hassleriana HOM05D004632 ORTHO05D005556 2.8e-14 82.8 85 42.4
A09p06280 Brassica napus HOM05D004632 ORTHO05D005556 4.7e-14 82.0 80 50.0
BolC9t53613H Brassica oleracea HOM05D004632 ORTHO05D005556 4.7e-14 82.0 80 50.0
BraA09t36273Z Brassica rapa HOM05D004632 ORTHO05D005556 4.7e-14 82.0 80 50.0
Oeu061252.3 Olea europaea HOM05D004632 ORTHO05D005556 1.8e-13 80.1 67 52.2
CDE05G3472 Ceratophyllum demersum HOM05D004632 ORTHO05D005556 2.3e-13 79.7 60 58.3
Carub.0006s2297 Capsella rubella HOM05D004632 ORTHO05D005556 5.2e-13 78.6 59 57.6
Actinidia13189 Actinidia chinensis HOM05D004632 ORTHO05D005556 6.8e-13 78.2 52 69.2
Pp3c12_23330 Physcomitrium patens HOM05D004632 ORTHO05D005556 8.9e-13 77.8 54 64.8
SMO118G0104 Selaginella moellendorffii HOM05D004632 ORTHO05D005556 8.9e-13 77.8 70 57.1
BcaC04g23574 Brassica carinata HOM05D004632 ORTHO05D005556 3.4e-12 75.9 77 49.4
C09p06950 Brassica napus HOM05D004632 ORTHO05D005556 3.4e-12 75.9 77 49.4
VMungo1309G1582 Vigna mungo HOM05D004632 ORTHO05D005556 4.4e-12 75.5 133 34.6
CBR_g39739 Chara braunii HOM05D004632 ORTHO05D005556 9.8e-12 74.3 49 65.3
Thhalv10003767m.g Eutrema salsugineum HOM05D004632 ORTHO05D005556 4.9e-11 72.0 80 42.5
AagrBONN_evm.TU.Sc2ySwM_228.3176 Anthoceros agrestis HOM05D003428 ORTHO05D004131 6.4e-11 71.6 64 53.1
TAR625G0176 Trochodendron aralioides HOM05D004632 ORTHO05D005556 2.7e-09 66.2 44 63.6
Actinidia10511 Actinidia chinensis HOM05D004632 ORTHO05D005556 1.3e-08 63.9 38 71.1
Cfa022837 Carpinus fangiana HOM05D004632 ORTHO05D005556 3.9e-08 62.4 65 49.2
CDE05G3588 Ceratophyllum demersum HOM05D004632 ORTHO05D005556 1.5e-07 60.5 79 40.5
Nitab4.5_0001582g0080 Nicotiana tabacum HOM05D006430 ORTHO05D007585 2.5e-07 59.7 61 45.9
Nitab4.5_0002138g0060 Nicotiana tabacum HOM05D006430 ORTHO05D007585 2.5e-07 59.7 61 45.9
Nitab4.5_0007182g0050 Nicotiana tabacum HOM05D004632 ORTHO05D005556 3.3e-07 59.3 72 41.7
Solyc11g005550.2 Solanum lycopersicum HOM05D006430 ORTHO05D007585 7.3e-07 58.2 61 44.3
Medtr8g092620 Medicago truncatula HOM05D006430 ORTHO05D007585 9.5e-07 57.8 64 42.2
Nitab4.5_0003976g0020 Nicotiana tabacum HOM05D004632 ORTHO05D005556 9.5e-07 57.8 115 35.7
Oeu015836.1 Olea europaea HOM05D006430 ORTHO05D007585 9.5e-07 57.8 139 29.5
PGSC0003DMG400003975 Solanum tuberosum HOM05D006430 ORTHO05D007585 9.5e-07 57.8 61 44.3
Atru.chr4.619 Acer truncatum HOM05D006430 ORTHO05D007585 1.2e-06 57.4 64 42.2
Manes.12G148000 Manihot esculenta HOM05D006430 ORTHO05D007585 1.2e-06 57.4 64 42.2
RcHm_v2.0_Chr2g0119831 Rosa chinensis HOM05D006430 ORTHO05D007585 1.2e-06 57.4 64 42.2
RcHm_v2.0_Chr6g0259141 Rosa chinensis HOM05D006430 ORTHO05D007585 1.2e-06 57.4 64 42.2
Peaxi162Scf00025g02621 Petunia axillaris HOM05D006430 ORTHO05D007585 1.6e-06 57.0 66 40.9
Sopen11g001520 Solanum pennellii HOM05D006430 ORTHO05D007585 1.6e-06 57.0 61 44.3
Thecc.01G118500 Theobroma cacao HOM05D006430 ORTHO05D007585 1.6e-06 57.0 73 37.0
FvH4_1g23870 Fragaria vesca HOM05D006430 ORTHO05D007585 2.1e-06 56.6 64 42.2
FAN19G1422 Fragaria x ananassa HOM05D006430 ORTHO05D007585 2.1e-06 56.6 64 42.2
PRCOL_00000651 Prasinoderma coloniale HOM05D004632 ORTHO05D005556 2.1e-06 56.6 58 51.7
MSTRG.3821 Avicennia marina HOM05D006430 ORTHO05D007585 2.8e-06 56.2 61 42.6
Haze_25101 Corylus avellana HOM05D006430 ORTHO05D007585 2.8e-06 56.2 64 40.6
Dinv02715 Davidia involucrata HOM05D006430 ORTHO05D007585 2.8e-06 56.2 68 41.2
FvH4_6g20551 Fragaria vesca HOM05D006430 ORTHO05D007585 2.8e-06 56.2 64 40.6
FAN05G3385 Fragaria x ananassa HOM05D006430 ORTHO05D007585 2.8e-06 56.2 64 42.2
FAN26G1413 Fragaria x ananassa HOM05D006430 ORTHO05D007585 2.8e-06 56.2 64 40.6
Prupe.6G161500 Prunus persica HOM05D006430 ORTHO05D007585 2.8e-06 56.2 64 42.2
TAR628G1086 Trochodendron aralioides HOM05D006430 ORTHO05D007585 2.8e-06 56.2 61 42.6
Cfa002800 Carpinus fangiana HOM05D006430 ORTHO05D007585 3.6e-06 55.8 64 40.6
Cc07_g16870 Coffea canephora HOM05D006430 ORTHO05D007585 3.6e-06 55.8 60 43.3
FAN28G2007 Fragaria x ananassa HOM05D006430 ORTHO05D007585 3.6e-06 55.8 64 42.2
Lj2C583G2 Lonicera japonica HOM05D000121 ORTHO05D000102 3.6e-06 55.8 90 36.7
Lj4g0013268 Lotus japonicus HOM05D006430 ORTHO05D007585 3.6e-06 55.8 64 40.6
Phvul.002G268300 Phaseolus vulgaris HOM05D006430 ORTHO05D007585 3.6e-06 55.8 64 40.6
Psat7g048920 Pisum sativum HOM05D006430 ORTHO05D007585 3.6e-06 55.8 64 42.2
TPR.G2201 Trifolium pratense HOM05D006430 ORTHO05D007585 3.6e-06 55.8 62 41.9
VMungo0251G0154 Vigna mungo HOM05D006430 ORTHO05D007585 3.6e-06 55.8 64 40.6
GSVIVG01016788001 Vitis vinifera HOM05D006430 ORTHO05D007585 3.6e-06 55.8 61 42.6
ATR0311G002 Amborella trichopoda HOM05D006430 ORTHO05D007585 4.7e-06 55.5 64 40.6
Ca_17667_v3 Cicer arietinum L. HOM05D006430 ORTHO05D007585 4.7e-06 55.5 64 40.6
Hma1.2p1_0253F.1_g102940 Hydrangea macrophylla HOM05D006430 ORTHO05D007585 4.7e-06 55.5 64 40.6
Hma1.2p1_0253F.1_g102950 Hydrangea macrophylla HOM05D006430 ORTHO05D007585 4.7e-06 55.5 64 40.6
Lj2A575G41 Lonicera japonica HOM05D006430 ORTHO05D007585 4.7e-06 55.5 68 39.7
unitig_37.g12838 Utricularia gibba HOM05D006430 ORTHO05D007585 4.7e-06 55.5 61 42.6
CANSAT01G2305 Cannabis sativa HOM05D006430 ORTHO05D007585 6.2e-06 55.1 64 40.6
Cpa.g.sc72.36 Carica papaya HOM05D006430 ORTHO05D007585 6.2e-06 55.1 61 41.0
CiPaw.03G130500 Carya illinoinensis HOM05D006430 ORTHO05D007585 6.2e-06 55.1 61 41.0
Gohir.A08G035600 Gossypium hirsutum HOM05D006430 ORTHO05D007585 6.2e-06 55.1 61 41.0
Gohir.D08G046300 Gossypium hirsutum HOM05D006430 ORTHO05D007585 6.2e-06 55.1 61 41.0
Gorai.004G045500 Gossypium raimondii HOM05D006430 ORTHO05D007585 6.2e-06 55.1 61 41.0
SHI11515 Sapria himalayana HOM05D000105 ORTHO05D000023 6.2e-06 55.1 67 38.8
Sc03g0004640 Simmondsia chinensis HOM05D006430 ORTHO05D007585 6.2e-06 55.1 67 38.8
Aqoxy6G00390 Aquilegia oxysepala HOM05D006430 ORTHO05D007585 8.0e-06 54.7 61 41.0
arahy.Tifrunner.gnm1.ann1.H2AKZ1 Arachis hypogaea HOM05D006430 ORTHO05D007585 8.0e-06 54.7 62 40.3
Duzib187G0475 Durio zibethinus HOM05D006430 ORTHO05D007585 8.0e-06 54.7 61 41.0
Hund19623 Selenicereus undatus HOM05D006430 ORTHO05D007585 8.0e-06 54.7 67 38.8
SGA_v2.0_scaffold47G17683 Striga asiatica HOM05D006430 ORTHO05D007585 8.0e-06 54.7 64 40.6
TWI79G0409 Tripterygium wilfordii HOM05D006430 ORTHO05D007585 8.0e-06 54.7 64 40.6


User provided reference genes

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