Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SEGI_28844 Sequoiadendron giganteum HOM05D002459 ORTHO05D025830 0.0e+00 1336.6 767 100.0
Mapoly0009s0110 Marchantia polymorpha HOM05D002459 ORTHO05D025830 1.9e-33 148.7 453 34.4
Mapoly0004s0010 Marchantia polymorpha HOM05D002459 ORTHO05D002326 7.6e-19 100.1 208 28.4
SMO164G0176 Selaginella moellendorffii HOM05D040172 ORTHO05D025830 7.4e-14 83.6 447 22.6
CBR_g48685 Chara braunii HOM05D002459 ORTHO05D003006 5.8e-11 73.9 97 35.1
FAN22G1262 Fragaria x ananassa HOM05D002310 ORTHO05D002326 1.3e-10 72.8 145 33.8
Ciclev10005817m.g Citrus clementina HOM05D002310 ORTHO05D002326 2.2e-10 72.0 163 30.7
SGA_v2.0_scaffold257G45713 Striga asiatica HOM05D002310 ORTHO05D002326 2.9e-10 71.6 159 30.2
FAN07G0096 Fragaria x ananassa HOM05D002310 ORTHO05D002326 3.8e-10 71.2 145 33.8
FAN17G0990 Fragaria x ananassa HOM05D002310 ORTHO05D002326 3.8e-10 71.2 145 33.8
ATR0697G286 Amborella trichopoda HOM05D002310 ORTHO05D002326 4.9e-10 70.9 140 35.0
CAN.G490.5 Capsicum annuum HOM05D002310 ORTHO05D002326 4.9e-10 70.9 142 32.4
FvH4_4g15540 Fragaria vesca HOM05D002310 ORTHO05D002326 4.9e-10 70.9 143 32.2
FAN12G2432 Fragaria x ananassa HOM05D002310 ORTHO05D002326 4.9e-10 70.9 143 32.2
Gorai.006G068300 Gossypium raimondii HOM05D002310 ORTHO05D002326 4.9e-10 70.9 177 31.1
CiPaw.02G097300 Carya illinoinensis HOM05D002310 ORTHO05D002326 6.5e-10 70.5 163 31.3
TWI09G0856 Tripterygium wilfordii HOM05D002310 ORTHO05D002326 6.5e-10 70.5 167 29.9
CANSAT78G0613 Cannabis sativa HOM05D002310 ORTHO05D002326 1.1e-09 69.7 143 32.2
Eucgr.H03481 Eucalyptus grandis HOM05D002310 ORTHO05D002326 1.1e-09 69.7 140 33.6
Gohir.A09G056100 Gossypium hirsutum HOM05D002310 ORTHO05D002326 1.1e-09 69.7 177 31.1
MD13G1193000 Malus domestica HOM05D002310 ORTHO05D002326 1.4e-09 69.3 168 30.4
RcHm_v2.0_Chr4g0416221 Rosa chinensis HOM05D002310 ORTHO05D002326 1.4e-09 69.3 167 31.1
PGSC0003DMG400030084 Solanum tuberosum HOM05D002310 ORTHO05D002326 1.4e-09 69.3 142 32.4
ATR0739G048 Amborella trichopoda HOM05D002459 ORTHO05D003006 1.9e-09 68.9 265 22.3
Gohir.D09G055300 Gossypium hirsutum HOM05D002310 ORTHO05D002326 1.9e-09 68.9 177 30.5
Sc19g0004150 Simmondsia chinensis HOM05D002310 ORTHO05D002326 1.9e-09 68.9 189 29.6
vmacro19786 Vaccinium macrocarpon HOM05D002459 ORTHO05D003006 1.9e-09 68.9 242 27.7
CiPaw.01G166000 Carya illinoinensis HOM05D002310 ORTHO05D002326 2.5e-09 68.6 142 34.5
SalBow2G3435 Salvia bowleyana HOM05D002310 ORTHO05D002326 2.5e-09 68.6 160 31.2
CAN.G243.34 Capsicum annuum HOM05D002459 ORTHO05D003006 3.2e-09 68.2 138 31.2
Manes.03G178600 Manihot esculenta HOM05D002310 ORTHO05D002326 3.2e-09 68.2 154 29.9
ATR1089G015 Amborella trichopoda HOM05D002459 ORTHO05D003006 4.2e-09 67.8 175 29.7
Cc03_g03780 Coffea canephora HOM05D002310 ORTHO05D002326 5.5e-09 67.4 149 30.2
MELO3C012650.2 Cucumis melo HOM05D002310 ORTHO05D002326 5.5e-09 67.4 163 28.8
DCAR_019949 Daucus carota HOM05D002459 ORTHO05D003006 5.5e-09 67.4 289 26.0
MD16G1193900 Malus domestica HOM05D002310 ORTHO05D002326 5.5e-09 67.4 145 31.0
Nitab4.5_0004258g0040 Nicotiana tabacum HOM05D002310 ORTHO05D002326 5.5e-09 67.4 142 33.1
TWI73G1015 Tripterygium wilfordii HOM05D002310 ORTHO05D002326 5.5e-09 67.4 163 28.8
ClCG06G006230 Citrullus lanatus HOM05D002310 ORTHO05D002326 7.1e-09 67.0 138 29.7
CsaV3_7G022500 Cucumis sativus L. HOM05D002310 ORTHO05D002326 7.1e-09 67.0 163 28.8
Solyc09g076040.3 Solanum lycopersicum HOM05D002310 ORTHO05D002326 7.1e-09 67.0 142 31.0
Sopen09g030870 Solanum pennellii HOM05D002310 ORTHO05D002326 7.1e-09 67.0 142 31.0
Potri.008G152900 Populus trichocarpa HOM05D002310 ORTHO05D002326 9.3e-09 66.6 163 30.1
Duzib212G0102 Durio zibethinus HOM05D002310 ORTHO05D002326 1.2e-08 66.2 140 35.0
SEGI_08334 Sequoiadendron giganteum HOM05D002459 ORTHO05D003006 1.2e-08 66.2 207 23.2
Thecc.04G232000 Theobroma cacao HOM05D002310 ORTHO05D002326 1.2e-08 66.2 140 32.9
AUR62033632 Chenopodium quinoa HOM05D002310 ORTHO05D002326 1.6e-08 65.9 173 30.6
Oeu020078.1 Olea europaea HOM05D002310 ORTHO05D002326 1.6e-08 65.9 164 31.1
GSVIVG01017976001 Vitis vinifera HOM05D002310 ORTHO05D002326 2.1e-08 65.5 146 32.9
Glyma.10G248100 Glycine max HOM05D002310 ORTHO05D002326 3.5e-08 64.7 163 28.8
Peaxi162Scf00092g01019 Petunia axillaris HOM05D002310 ORTHO05D002326 3.5e-08 64.7 142 31.7
Atru.ctg752_3.77 Acer truncatum HOM05D002310 ORTHO05D002326 4.6e-08 64.3 161 27.3
arahy.Tifrunner.gnm1.ann1.5P4QKH Arachis hypogaea HOM05D002310 ORTHO05D002326 6.0e-08 63.9 163 28.2
arahy.Tifrunner.gnm1.ann1.Q8TT5G Arachis hypogaea HOM05D002310 ORTHO05D002326 6.0e-08 63.9 163 28.2
AUR62034749 Chenopodium quinoa HOM05D002310 ORTHO05D002326 6.0e-08 63.9 170 30.6
Cfa015645 Carpinus fangiana HOM05D002310 ORTHO05D002326 7.9e-08 63.5 165 30.3
Potri.010G087400 Populus trichocarpa HOM05D002310 ORTHO05D002326 7.9e-08 63.5 139 32.4
CSS0046129 Camellia sinensis var. sinensis HOM05D002459 ORTHO05D003006 1.0e-07 63.2 288 23.6
CBR_g48680 Chara braunii HOM05D002459 ORTHO05D011373 1.3e-07 62.8 98 34.7
Dinv13995 Davidia involucrata HOM05D002310 ORTHO05D002326 1.3e-07 62.8 155 31.6
Nn4g26323 Nelumbo nucifera HOM05D002310 ORTHO05D002326 1.3e-07 62.8 141 29.8
Phvul.007G057400 Phaseolus vulgaris HOM05D002310 ORTHO05D002326 1.3e-07 62.8 141 29.8
PGR004G1373 Punica granatum HOM05D002310 ORTHO05D002326 1.3e-07 62.8 139 32.4
SEGI_32121 Sequoiadendron giganteum HOM05D002459 ORTHO05D003006 1.3e-07 62.8 306 22.2
Nn5g27205 Nelumbo nucifera HOM05D002459 ORTHO05D003006 1.8e-07 62.4 241 24.9
Prupe.1G013600 Prunus persica HOM05D002310 ORTHO05D002326 1.8e-07 62.4 145 30.3
Solyc04g025300.3 Solanum lycopersicum HOM05D002459 ORTHO05D003006 1.8e-07 62.4 308 25.0
Sopen04g011950 Solanum pennellii HOM05D002459 ORTHO05D003006 1.8e-07 62.4 308 25.0
VMungo0720G0449 Vigna mungo HOM05D002310 ORTHO05D002326 3.0e-07 61.6 160 28.1
A06p34530 Brassica napus HOM05D004337 ORTHO05D005422 3.9e-07 61.2 176 25.6
DCAR_019950 Daucus carota HOM05D002459 ORTHO05D003006 3.9e-07 61.2 281 24.9
QL06p002477 Quercus lobata HOM05D002310 ORTHO05D002326 5.1e-07 60.8 139 30.2
TAR362G0728 Trochodendron aralioides HOM05D002310 ORTHO05D002326 5.1e-07 60.8 166 30.7
Lj6A608G62 Lonicera japonica HOM05D002310 ORTHO05D002326 8.7e-07 60.1 151 28.5
Sed0017994 Sechium edule HOM05D002310 ORTHO05D002326 8.7e-07 60.1 138 29.0
Lsat_1_v5_gn_7_67261 Lactuca sativa HOM05D002310 ORTHO05D002326 1.1e-06 59.7 162 30.2
Nitab4.5_0000218g0100 Nicotiana tabacum HOM05D002459 ORTHO05D003006 1.1e-06 59.7 308 25.0
Aqoxy2G03391 Aquilegia oxysepala HOM05D002310 ORTHO05D002326 1.5e-06 59.3 142 32.4
Lj1C953T6 Lonicera japonica HOM05D002459 ORTHO05D003006 1.5e-06 59.3 286 25.2
ATR1089G089 Amborella trichopoda HOM05D002459 ORTHO05D003006 1.9e-06 58.9 317 24.3
CAN.G10.9 Capsicum annuum HOM05D002459 ORTHO05D003006 1.9e-06 58.9 308 24.0
Dinv44536 Davidia involucrata HOM05D002310 ORTHO05D002326 1.9e-06 58.9 165 29.1
Duzib151G0125 Durio zibethinus HOM05D002310 ORTHO05D002326 1.9e-06 58.9 140 30.7
HanXRQChr03g0062691 Helianthus annuus HOM05D002459 ORTHO05D003006 1.9e-06 58.9 292 24.0
Hund21762 Selenicereus undatus HOM05D002459 ORTHO05D003006 1.9e-06 58.9 295 23.7
CSS0045550 Camellia sinensis var. sinensis HOM05D002310 ORTHO05D002326 2.5e-06 58.5 169 29.6
Lsat_1_v5_gn_5_79701 Lactuca sativa HOM05D002459 ORTHO05D003006 2.5e-06 58.5 204 25.5
QL10p037432 Quercus lobata HOM05D002459 ORTHO05D003006 2.5e-06 58.5 286 23.1
SGA_v2.0_scaffold34G13683 Striga asiatica HOM05D002459 ORTHO05D003006 2.5e-06 58.5 290 22.4
HPP92_004640 Vanilla planifolia HOM05D002459 ORTHO05D003006 2.5e-06 58.5 264 23.9
Aqoxy6G00039 Aquilegia oxysepala HOM05D002459 ORTHO05D003006 3.3e-06 58.2 243 21.4
Nitab4.5_0000102g0250 Nicotiana tabacum HOM05D002459 ORTHO05D003006 3.3e-06 58.2 276 23.9
TAR362G0961 Trochodendron aralioides HOM05D002310 ORTHO05D002326 3.3e-06 58.2 182 28.0
AUR62000616 Chenopodium quinoa HOM05D002459 ORTHO05D003006 4.3e-06 57.8 187 24.6
Cc00_g00830 Coffea canephora HOM05D002459 ORTHO05D003006 4.3e-06 57.8 257 23.0
Peaxi162Scf00651g00012 Petunia axillaris HOM05D002459 ORTHO05D003006 4.3e-06 57.8 462 22.7
Sabra03G0137400 Salix brachista HOM05D002459 ORTHO05D003006 4.3e-06 57.8 218 27.1
HanXRQChr12g0359071 Helianthus annuus HOM05D002459 ORTHO05D003006 5.7e-06 57.4 298 23.8
Rhsim04G0059000 Rhododendron simsii HOM05D002459 ORTHO05D003006 5.7e-06 57.4 130 31.5
Zm00001eb264310 Zea mays HOM05D002459 ORTHO05D003006 5.7e-06 57.4 326 23.0
EL10As3g23290 Beta vulgaris HOM05D002310 ORTHO05D002326 7.4e-06 57.0 213 24.4
DCAR_019952 Daucus carota HOM05D002459 ORTHO05D003006 7.4e-06 57.0 316 24.4
Lsat_1_v5_gn_7_45361 Lactuca sativa HOM05D002459 ORTHO05D003006 7.4e-06 57.0 260 25.8
arahy.Tifrunner.gnm1.ann1.QD9RQK Arachis hypogaea HOM05D002459 ORTHO05D003006 9.7e-06 56.6 263 24.3
SEGI_09221 Sequoiadendron giganteum HOM05D002310 ORTHO05D002326 9.7e-06 56.6 91 37.4
Sc21g0002080 Simmondsia chinensis HOM05D002459 ORTHO05D003006 9.7e-06 56.6 231 25.1


User provided reference genes

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