Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SEGI_26726 Sequoiadendron giganteum HOM05D000068 ORTHO05D385329 1.0e-48 196.4 100 100.0
Gorai.006G163000 Gossypium raimondii HOM05D000068 ORTHO05D000084 4.5e-20 101.3 78 69.2
Gohir.D09G142000 Gossypium hirsutum HOM05D000068 ORTHO05D000084 5.8e-20 100.9 78 69.2
vmacro07294 Vaccinium macrocarpon HOM05D000068 ORTHO05D000084 1.1e-18 96.7 78 64.1
DCAR_017678 Daucus carota HOM05D000068 ORTHO05D000084 9.3e-18 93.6 78 62.8
Gohir.A09G146300 Gossypium hirsutum HOM05D000068 ORTHO05D000084 9.3e-18 93.6 78 65.4
Thecc.05G067700 Theobroma cacao HOM05D000068 ORTHO05D000084 1.2e-17 93.2 78 65.4
Cfa017618 Carpinus fangiana HOM05D000068 ORTHO05D000084 2.1e-17 92.4 96 54.2
Migut.J00652 Erythranthe guttata HOM05D000068 ORTHO05D000084 2.1e-17 92.4 75 65.3
PSO063G2543 Papaver somniferum HOM05D000068 ORTHO05D000084 2.1e-17 92.4 76 63.2
PSO339G5870 Papaver somniferum HOM05D000068 ORTHO05D000084 2.1e-17 92.4 76 63.2
PSO801G0252 Papaver somniferum HOM05D000068 ORTHO05D000084 2.1e-17 92.4 82 62.2
arahy.Tifrunner.gnm1.ann1.P2ZBX8 Arachis hypogaea HOM05D000068 ORTHO05D000084 2.7e-17 92.0 78 64.1
arahy.Tifrunner.gnm1.ann1.W0RWMP Arachis hypogaea HOM05D000068 ORTHO05D000084 2.7e-17 92.0 78 64.1
DCAR_015001 Daucus carota HOM05D000068 ORTHO05D000084 2.7e-17 92.0 78 61.5
Glyma.03G183600 Glycine max HOM05D000068 ORTHO05D000084 2.7e-17 92.0 78 64.1
Glyma.19G184300 Glycine max HOM05D000068 ORTHO05D000084 2.7e-17 92.0 78 64.1
PSO339G0669 Papaver somniferum HOM05D000068 ORTHO05D000084 2.7e-17 92.0 82 62.2
Prupe.7G129600 Prunus persica HOM05D000068 ORTHO05D000084 2.7e-17 92.0 78 64.1
Atru.chr8.1797 Acer truncatum HOM05D000068 ORTHO05D000084 3.5e-17 91.7 78 64.1
Actinidia28906 Actinidia chinensis HOM05D000068 ORTHO05D000084 3.5e-17 91.7 78 62.8
Ca_08906_v3 Cicer arietinum L. HOM05D000068 ORTHO05D000084 3.5e-17 91.7 78 64.1
Manes.08G011100 Manihot esculenta HOM05D000068 ORTHO05D000084 3.5e-17 91.7 77 63.6
Zm00001eb038710 Zea mays HOM05D000068 ORTHO05D000084 3.5e-17 91.7 75 62.7
BcaB01g03808 Brassica carinata HOM05D000068 ORTHO05D000084 4.6e-17 91.3 78 62.8
BcaC01g05635 Brassica carinata HOM05D000068 ORTHO05D000084 4.6e-17 91.3 78 62.8
A03p20320 Brassica napus HOM05D000068 ORTHO05D000084 4.6e-17 91.3 78 62.8
C03p23880 Brassica napus HOM05D000068 ORTHO05D000084 4.6e-17 91.3 78 62.8
BolC3t14780H Brassica oleracea HOM05D000068 ORTHO05D000084 4.6e-17 91.3 78 62.8
BraA03t11278Z Brassica rapa HOM05D000068 ORTHO05D000084 4.6e-17 91.3 78 62.8
HanXRQChr02g0048421 Helianthus annuus HOM05D000068 ORTHO05D000084 4.6e-17 91.3 76 65.8
CiPaw.09G172000 Carya illinoinensis HOM05D000068 ORTHO05D000084 6.0e-17 90.9 78 62.8
Haze_20540 Corylus avellana HOM05D000068 ORTHO05D000084 6.0e-17 90.9 78 62.8
Hma1.2p1_0205F.1_g086980 Hydrangea macrophylla HOM05D000068 ORTHO05D000084 6.0e-17 90.9 78 62.8
Potri.016G093600 Populus trichocarpa HOM05D000068 ORTHO05D000084 6.0e-17 90.9 78 62.8
TWI74G0168 Tripterygium wilfordii HOM05D000068 ORTHO05D000084 6.0e-17 90.9 78 62.8
Actinidia08769 Actinidia chinensis HOM05D000068 ORTHO05D000084 7.9e-17 90.5 78 61.5
CSS0022715 Camellia sinensis var. sinensis HOM05D000068 ORTHO05D000084 7.9e-17 90.5 78 61.5
CSS0023617 Camellia sinensis var. sinensis HOM05D000068 ORTHO05D000084 7.9e-17 90.5 78 61.5
ClCG10G020090 Citrullus lanatus HOM05D000068 ORTHO05D000084 7.9e-17 90.5 79 60.8
MELO3C000009.2 Cucumis melo HOM05D000068 ORTHO05D000084 7.9e-17 90.5 79 60.8
Glyma.13G142100 Glycine max HOM05D000068 ORTHO05D000084 7.9e-17 90.5 78 61.5
Gohir.A01G213400 Gossypium hirsutum HOM05D000068 ORTHO05D000084 7.9e-17 90.5 76 64.5
Gohir.D01G202100 Gossypium hirsutum HOM05D000068 ORTHO05D000084 7.9e-17 90.5 76 64.5
Gorai.002G246800 Gossypium raimondii HOM05D000068 ORTHO05D000084 7.9e-17 90.5 76 64.5
MD04G1092800 Malus domestica HOM05D000068 ORTHO05D000084 7.9e-17 90.5 78 62.8
Nitab4.5_0003861g0020 Nicotiana tabacum HOM05D000068 ORTHO05D000084 7.9e-17 90.5 77 63.6
Lj1g0014306 Lotus japonicus HOM05D000068 ORTHO05D000084 1.0e-16 90.1 78 62.8
HPP92_007176 Vanilla planifolia HOM05D000068 ORTHO05D000084 1.0e-16 90.1 76 63.2
CSS0019883 Camellia sinensis var. sinensis HOM05D000068 ORTHO05D000084 1.3e-16 89.7 78 61.5
CSS0023380 Camellia sinensis var. sinensis HOM05D000068 ORTHO05D000084 1.3e-16 89.7 78 61.5
Medtr1g063170 Medicago truncatula HOM05D000068 ORTHO05D000084 1.3e-16 89.7 79 63.3
Medtr7g102070 Medicago truncatula HOM05D000068 ORTHO05D000084 1.3e-16 89.7 78 62.8
TPR.G32830 Trifolium pratense HOM05D000068 ORTHO05D000084 1.3e-16 89.7 78 62.8
TAR623G0718 Trochodendron aralioides HOM05D000068 ORTHO05D000084 1.3e-16 89.7 78 61.5
CANSAT80G0311 Cannabis sativa HOM05D000068 ORTHO05D000084 1.8e-16 89.4 77 63.6
Duzib093G0274 Durio zibethinus HOM05D000068 ORTHO05D000084 1.8e-16 89.4 72 66.7
Nn2g13803 Nelumbo nucifera HOM05D000068 ORTHO05D000084 1.8e-16 89.4 78 62.8
QL07p043210 Quercus lobata HOM05D000068 ORTHO05D000084 1.8e-16 89.4 78 61.5
Ca_11507_v3 Cicer arietinum L. HOM05D000068 ORTHO05D000084 2.3e-16 89.0 79 62.0
Ca_29752_v3 Cicer arietinum L. HOM05D000068 ORTHO05D000084 2.3e-16 89.0 79 62.0
Eucgr.K02930 Eucalyptus grandis HOM05D000068 ORTHO05D000084 2.3e-16 89.0 78 61.5
Psat6g073880 Pisum sativum HOM05D000068 ORTHO05D000084 3.0e-16 88.6 78 61.5
Sed0018529 Sechium edule HOM05D000068 ORTHO05D000084 3.0e-16 88.6 79 59.5
VMungo1383G0873 Vigna mungo HOM05D000068 ORTHO05D000084 3.9e-16 88.2 78 61.5
Lsat_1_v5_gn_2_107041 Lactuca sativa HOM05D000068 ORTHO05D000084 5.1e-16 87.8 76 63.2
PGR142G1384 Punica granatum HOM05D000068 ORTHO05D000084 5.1e-16 87.8 78 60.3
GSVIVG01033645001 Vitis vinifera HOM05D000068 ORTHO05D000084 5.1e-16 87.8 78 60.3
ATR1126G028 Amborella trichopoda HOM05D000068 ORTHO05D000084 6.7e-16 87.4 73 64.4
Aqoxy1G01148_Aqoxy1G01149 Aquilegia oxysepala HOM05D000068 ORTHO05D000084 6.7e-16 87.4 78 60.3
Sabra06G0098100 Salix brachista HOM05D000068 ORTHO05D000084 6.7e-16 87.4 77 62.3
VMungo0720G1516 Vigna mungo HOM05D000068 ORTHO05D000084 6.7e-16 87.4 78 60.3
Aqoxy2G01747 Aquilegia oxysepala HOM05D000068 ORTHO05D000084 8.7e-16 87.0 76 60.5
Nitab4.5_0008455g0010 Nicotiana tabacum HOM05D000068 ORTHO05D000084 8.7e-16 87.0 77 62.3
Phvul.001G179300 Phaseolus vulgaris HOM05D000068 ORTHO05D000084 8.7e-16 87.0 78 60.3
CsaV3_3G035990 Cucumis sativus L. HOM05D000068 ORTHO05D000084 1.1e-15 86.7 79 58.2
Ciclev10010916m.g Citrus clementina HOM05D000068 ORTHO05D000084 1.5e-15 86.3 77 61.0
Potri.006G123900 Populus trichocarpa HOM05D000068 ORTHO05D000084 1.5e-15 86.3 77 61.0
Sed0013100 Sechium edule HOM05D000068 ORTHO05D000084 1.5e-15 86.3 79 58.2
DCAR_020814 Daucus carota HOM05D000068 ORTHO05D000084 1.9e-15 85.9 78 60.3
FvH4_6g16450 Fragaria vesca HOM05D000068 ORTHO05D000084 1.9e-15 85.9 77 61.0
FAN02G0969 Fragaria x ananassa HOM05D000068 ORTHO05D000084 1.9e-15 85.9 77 61.0
FAN05G3771 Fragaria x ananassa HOM05D000068 ORTHO05D000084 1.9e-15 85.9 77 61.0
FAN09G0132 Fragaria x ananassa HOM05D000068 ORTHO05D000084 1.9e-15 85.9 77 61.0
HanXRQChr11g0350511 Helianthus annuus HOM05D000068 ORTHO05D000084 1.9e-15 85.9 79 59.5
Phvul.007G147400 Phaseolus vulgaris HOM05D000068 ORTHO05D000084 1.9e-15 85.9 78 59.0
RcHm_v2.0_Chr3g0470311 Rosa chinensis HOM05D000068 ORTHO05D000084 1.9e-15 85.9 77 61.0
Glyma.10G055000 Glycine max HOM05D000068 ORTHO05D000084 2.5e-15 85.5 78 59.0
Psat3g042320 Pisum sativum HOM05D000068 ORTHO05D000084 2.5e-15 85.5 78 60.3
COL.COLO4_26954 Corchorus olitorius HOM05D000068 ORTHO05D000084 3.3e-15 85.1 78 60.3
HanXRQChr14g0454451 Helianthus annuus HOM05D000068 ORTHO05D000084 3.3e-15 85.1 78 60.3
Lalb_Chr25g0288961 Lupinus albus HOM05D000068 ORTHO05D000084 3.3e-15 85.1 78 60.3
Manes.09G065700 Manihot esculenta HOM05D000068 ORTHO05D000084 4.3e-15 84.7 77 59.7
Peaxi162Scf00847g00008 Petunia axillaris HOM05D000068 ORTHO05D000084 5.6e-15 84.3 77 59.7
Lalb_Chr01g0018681 Lupinus albus HOM05D000068 ORTHO05D000084 7.4e-15 84.0 78 59.0
MBI18_g27466_MAGBIO Magnolia biondii HOM05D000068 ORTHO05D000084 7.4e-15 84.0 77 59.7
AL4G33140 Arabidopsis lyrata HOM05D000068 ORTHO05D000084 9.6e-15 83.6 78 57.7
AT2G36910 Arabidopsis thaliana HOM05D000068 ORTHO05D000084 9.6e-15 83.6 78 57.7
Sp4g19210 Schrenkiella parvula HOM05D000068 ORTHO05D000084 9.6e-15 83.6 78 59.0
Actinidia32490 Actinidia chinensis HOM05D000068 ORTHO05D000084 1.3e-14 83.2 78 56.4
Actinidia31328 Actinidia chinensis HOM05D000068 ORTHO05D000084 1.6e-14 82.8 78 56.4
Lsat_1_v5_gn_1_52361 Lactuca sativa HOM05D000068 ORTHO05D000084 2.1e-14 82.4 80 60.0
Sc20g0005530 Simmondsia chinensis HOM05D000068 ORTHO05D000084 2.1e-14 82.4 80 56.2
Cc06_g04260 Coffea canephora HOM05D000068 ORTHO05D000084 2.8e-14 82.0 78 57.7
BcaC02g07568 Brassica carinata HOM05D000068 ORTHO05D000084 3.7e-14 81.6 78 53.8
BolC4t28049H Brassica oleracea HOM05D000068 ORTHO05D000084 3.7e-14 81.6 78 53.8
BraA04t18307Z Brassica rapa HOM05D000068 ORTHO05D000084 3.7e-14 81.6 78 53.8
Ah.15g092550 Amaranthus hybridus HOM05D000068 ORTHO05D000084 4.8e-14 81.3 77 59.7
MSTRG.10324 Avicennia marina HOM05D000068 ORTHO05D000084 4.8e-14 81.3 78 56.4
Solyc09g008240.3 Solanum lycopersicum HOM05D000068 ORTHO05D000084 4.8e-14 81.3 77 58.4
Sopen09g003060 Solanum pennellii HOM05D000068 ORTHO05D000084 4.8e-14 81.3 77 58.4
PGSC0003DMG400003889 Solanum tuberosum HOM05D000068 ORTHO05D000084 4.8e-14 81.3 77 58.4
Ah.08g211600 Amaranthus hybridus HOM05D000068 ORTHO05D000084 6.2e-14 80.9 97 49.5
Oeu053681.1 Olea europaea HOM05D000068 ORTHO05D000084 6.2e-14 80.9 76 57.9
arahy.Tifrunner.gnm1.ann1.I8RYIH Arachis hypogaea HOM05D000068 ORTHO05D000084 8.1e-14 80.5 78 55.1
arahy.Tifrunner.gnm1.ann1.UMX69X Arachis hypogaea HOM05D000068 ORTHO05D000084 8.1e-14 80.5 78 55.1
Lj3C986T15 Lonicera japonica HOM05D000068 ORTHO05D000084 8.1e-14 80.5 77 57.1
Aa31LG5G22140 Aethionema arabicum HOM05D000068 ORTHO05D000084 1.8e-13 79.3 78 56.4
CARHR131390 Cardamine hirsuta HOM05D000068 ORTHO05D000084 1.8e-13 79.3 78 56.4
CAN.G900.28 Capsicum annuum HOM05D000068 ORTHO05D000084 2.4e-13 79.0 77 57.1
THA.LOC104807060 Tarenaya hassleriana HOM05D000068 ORTHO05D000084 2.4e-13 79.0 78 53.8
AUR62040338 Chenopodium quinoa HOM05D000068 ORTHO05D000084 3.1e-13 78.6 77 54.5
AUR62042509 Chenopodium quinoa HOM05D000068 ORTHO05D000084 3.1e-13 78.6 77 54.5
Thhalv10016150m.g Eutrema salsugineum HOM05D000068 ORTHO05D000084 3.1e-13 78.6 78 55.1
Sabra16G0098700 Salix brachista HOM05D000068 ORTHO05D000084 3.1e-13 78.6 78 55.1
Rhsim03G0091100 Rhododendron simsii HOM05D000068 ORTHO05D000084 5.3e-13 77.8 75 58.7
A04p28230 Brassica napus HOM05D000068 ORTHO05D000084 6.9e-13 77.4 76 52.6
TAR633G2707 Trochodendron aralioides HOM05D000068 ORTHO05D000084 6.9e-13 77.4 77 55.8
CDE09G1185 Ceratophyllum demersum HOM05D000068 ORTHO05D000084 1.2e-12 76.6 72 59.7
MSTRG.5765 Avicennia marina HOM05D000068 ORTHO05D000084 2.6e-12 75.5 78 52.6
SalBow5G1685 Salvia bowleyana HOM05D000068 ORTHO05D000084 2.6e-12 75.5 90 47.8
Hund20363 Selenicereus undatus HOM05D000068 ORTHO05D000084 5.8e-12 74.3 77 51.9
SGA_v2.0_scaffold40G15521 Striga asiatica HOM05D000068 ORTHO05D000084 1.0e-11 73.6 75 54.7
EL10Ac7g16637 Beta vulgaris HOM05D000068 ORTHO05D000084 1.7e-11 72.8 80 50.0
Lj2A121T42 Lonicera japonica HOM05D000068 ORTHO05D000084 6.5e-11 70.9 77 51.9
Os08g0564300 Oryza sativa ssp. japonica HOM05D000068 ORTHO05D000084 6.5e-11 70.9 75 56.0
CDE02G0757 Ceratophyllum demersum HOM05D000068 ORTHO05D000084 8.4e-11 70.5 72 55.6
HanXRQChr01g0027761 Helianthus annuus HOM05D000068 ORTHO05D000084 1.1e-10 70.1 76 50.0
SGA_v2.0_scaffold75G24849 Striga asiatica HOM05D000068 ORTHO05D000084 1.4e-10 69.7 91 45.1
unitig_22.g5099 Utricularia gibba HOM05D000068 ORTHO05D000084 1.9e-10 69.3 77 54.5
Psat0ss3186g0160 Pisum sativum HOM05D000564 ORTHO05D002780 6.0e-09 64.3 56 64.3
SalBow3G2918 Salvia bowleyana HOM05D000068 ORTHO05D000084 5.1e-08 61.2 79 46.8
Nn6g35285 Nelumbo nucifera HOM05D000068 ORTHO05D000084 2.8e-06 55.5 78 44.9


User provided reference genes

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