Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SEGI_26662 Sequoiadendron giganteum HOM05D005018 ORTHO05D006786 1.2e-46 189.5 97 100.0
MSTRG.21275 Avicennia marina HOM05D005018 ORTHO05D006786 1.3e-16 89.7 84 57.1
Nn5g28451 Nelumbo nucifera HOM05D005018 ORTHO05D006786 1.3e-16 89.7 78 60.3
SGA_v2.0_scaffold5G02934 Striga asiatica HOM05D005018 ORTHO05D006786 1.7e-16 89.4 63 69.8
Gohir.D09G004500 Gossypium hirsutum HOM05D005018 ORTHO05D006786 2.2e-16 89.0 76 64.5
QL10p041655 Quercus lobata HOM05D005018 ORTHO05D006786 2.9e-16 88.6 80 60.0
QL10p041885 Quercus lobata HOM05D005018 ORTHO05D006786 2.9e-16 88.6 80 60.0
Aqoxy6G00298 Aquilegia oxysepala HOM05D005018 ORTHO05D006786 4.9e-16 87.8 95 55.8
MBI03_g13501_MAGBIO Magnolia biondii HOM05D005018 ORTHO05D006786 4.9e-16 87.8 61 73.8
CsaV3_6G041220 Cucumis sativus L. HOM05D005018 ORTHO05D006786 8.4e-16 87.0 85 52.9
CSS0009965 Camellia sinensis var. sinensis HOM05D005018 ORTHO05D006786 1.1e-15 86.7 75 58.7
SalBow6G7214 Salvia bowleyana HOM05D005018 ORTHO05D006786 1.1e-15 86.7 87 57.5
Prupe.5G002000 Prunus persica HOM05D005018 ORTHO05D006786 1.4e-15 86.3 75 66.7
RcHm_v2.0_Chr1g0331701 Rosa chinensis HOM05D005018 ORTHO05D006786 1.4e-15 86.3 75 62.7
TAR625G0766 Trochodendron aralioides HOM05D005018 ORTHO05D006786 1.4e-15 86.3 67 65.7
VMungo0251G2317 Vigna mungo HOM05D005018 ORTHO05D006786 1.4e-15 86.3 76 59.2
Atru.chr4.947 Acer truncatum HOM05D005018 ORTHO05D006786 1.9e-15 85.9 77 61.0
EL10Ac4g09610 Beta vulgaris HOM05D005018 ORTHO05D006786 1.9e-15 85.9 69 65.2
Cc02_g29450 Coffea canephora HOM05D005018 ORTHO05D006786 1.9e-15 85.9 73 63.0
Lalb_Chr07g0184291 Lupinus albus HOM05D005018 ORTHO05D006786 1.9e-15 85.9 75 61.3
CSS0041776 Camellia sinensis var. sinensis HOM05D005018 ORTHO05D006786 2.5e-15 85.5 58 74.1
MELO3C024598.2 Cucumis melo HOM05D005018 ORTHO05D006786 2.5e-15 85.5 85 52.9
Gohir.A09G005200 Gossypium hirsutum HOM05D005018 ORTHO05D006786 2.5e-15 85.5 75 62.7
Gorai.006G006100 Gossypium raimondii HOM05D005018 ORTHO05D006786 2.5e-15 85.5 77 62.3
Thecc.01G136300 Theobroma cacao HOM05D005018 ORTHO05D006786 2.5e-15 85.5 69 65.2
Actinidia06572 Actinidia chinensis HOM05D005018 ORTHO05D006786 3.2e-15 85.1 78 59.0
ClCG01G015110 Citrullus lanatus HOM05D005018 ORTHO05D006786 3.2e-15 85.1 63 66.7
HanXRQChr03g0092941 Helianthus annuus HOM05D005018 ORTHO05D006786 3.2e-15 85.1 66 68.2
Lj2A615T20 Lonicera japonica HOM05D005018 ORTHO05D006786 3.2e-15 85.1 43 95.3
ECA240G3046 Erigeron canadensis HOM05D005018 ORTHO05D006786 4.2e-15 84.7 59 74.6
AagrBONN_evm.TU.Sc2ySwM_344.2451 Anthoceros agrestis HOM05D005018 ORTHO05D006786 5.5e-15 84.3 79 59.5
GSVIVG01026449001 Vitis vinifera HOM05D005018 ORTHO05D006786 5.5e-15 84.3 56 76.8
CANSAT01G0968 Cannabis sativa HOM05D005018 ORTHO05D006786 7.1e-15 84.0 59 71.2
Nitab4.5_0000316g0160 Nicotiana tabacum HOM05D005018 ORTHO05D006786 7.1e-15 84.0 59 74.6
Os01g0960300 Oryza sativa ssp. japonica HOM05D005018 ORTHO05D006786 7.1e-15 84.0 43 93.0
ATR0730G013 Amborella trichopoda HOM05D005018 ORTHO05D006786 9.3e-15 83.6 43 93.0
Cpa.g.sc42.187 Carica papaya HOM05D005018 ORTHO05D006786 9.3e-15 83.6 85 57.6
Nitab4.5_0006307g0020 Nicotiana tabacum HOM05D005018 ORTHO05D006786 9.3e-15 83.6 58 75.9
Peaxi162Scf00087g00314 Petunia axillaris HOM05D005018 ORTHO05D006786 9.3e-15 83.6 70 65.7
Aa31sc255G10 Aethionema arabicum HOM05D005018 ORTHO05D006786 1.2e-14 83.2 78 61.5
Ca_17625_v3 Cicer arietinum L. HOM05D005018 ORTHO05D006786 1.2e-14 83.2 85 60.0
Ciclev10003172m.g Citrus clementina HOM05D005018 ORTHO05D006786 1.2e-14 83.2 62 66.1
Glyma.08G001700 Glycine max HOM05D005018 ORTHO05D006786 1.2e-14 83.2 43 90.7
Manes.02G085200 Manihot esculenta HOM05D005018 ORTHO05D006786 1.2e-14 83.2 77 59.7
TPR.G37346 Trifolium pratense HOM05D005018 ORTHO05D006786 1.2e-14 83.2 43 90.7
AL3G45320 Arabidopsis lyrata HOM05D005018 ORTHO05D006786 1.6e-14 82.8 55 74.5
AT2G13440 Arabidopsis thaliana HOM05D005018 ORTHO05D006786 1.6e-14 82.8 55 74.5
FAN06G2729 Fragaria x ananassa HOM05D005018 ORTHO05D006786 1.6e-14 82.8 74 62.2
Lj4g0009092 Lotus japonicus HOM05D005018 ORTHO05D006786 1.6e-14 82.8 94 52.1
Medtr8g094030 Medicago truncatula HOM05D005018 ORTHO05D006786 1.6e-14 82.8 74 62.2
Psat7g044640 Pisum sativum HOM05D005018 ORTHO05D006786 1.6e-14 82.8 83 57.8
Rhsim12G0009100 Rhododendron simsii HOM05D005018 ORTHO05D006786 1.6e-14 82.8 42 92.9
Sed0008983 Sechium edule HOM05D005018 ORTHO05D006786 1.6e-14 82.8 63 63.5
Sopen01g030230 Solanum pennellii HOM05D005018 ORTHO05D006786 1.6e-14 82.8 82 61.0
vmacro23049 Vaccinium macrocarpon HOM05D005018 ORTHO05D006786 1.6e-14 82.8 75 60.0
CAN.G410.44 Capsicum annuum HOM05D005018 ORTHO05D006786 2.1e-14 82.4 42 92.9
COL.COLO4_35799 Corchorus olitorius HOM05D005018 ORTHO05D006786 2.1e-14 82.4 42 92.9
DCAR_018989 Daucus carota HOM05D005018 ORTHO05D006786 2.1e-14 82.4 62 69.4
Migut.D00797 Erythranthe guttata HOM05D005018 ORTHO05D006786 2.1e-14 82.4 42 92.9
FvH4_7g05150 Fragaria vesca HOM05D005018 ORTHO05D006786 2.1e-14 82.4 74 62.2
Lsat_1_v5_gn_3_126721 Lactuca sativa HOM05D005018 ORTHO05D006786 2.1e-14 82.4 42 90.5
Pp3c16_24810 Physcomitrium patens HOM05D005018 ORTHO05D006786 2.1e-14 82.4 55 70.9
Ah.06g190950 Amaranthus hybridus HOM05D005018 ORTHO05D006786 2.7e-14 82.0 75 62.7
arahy.Tifrunner.gnm1.ann1.IZT9KT Arachis hypogaea HOM05D005018 ORTHO05D006786 2.7e-14 82.0 65 67.7
Eucgr.I00131 Eucalyptus grandis HOM05D005018 ORTHO05D006786 2.7e-14 82.0 67 64.2
FAN03G0747 Fragaria x ananassa HOM05D005018 ORTHO05D006786 2.7e-14 82.0 74 62.2
Glyma.05G193600 Glycine max HOM05D005018 ORTHO05D006786 2.7e-14 82.0 43 88.4
Phvul.002G274000 Phaseolus vulgaris HOM05D005018 ORTHO05D006786 2.7e-14 82.0 43 88.4
Potri.005G066300 Populus trichocarpa HOM05D005018 ORTHO05D006786 2.7e-14 82.0 41 95.1
Hund28182 Selenicereus undatus HOM05D005018 ORTHO05D006786 2.7e-14 82.0 69 65.2
Hund28185 Selenicereus undatus HOM05D005018 ORTHO05D006786 2.7e-14 82.0 69 65.2
TWI79G0394 Tripterygium wilfordii HOM05D005018 ORTHO05D006786 2.7e-14 82.0 42 92.9
arahy.Tifrunner.gnm1.ann1.YY52IF Arachis hypogaea HOM05D005018 ORTHO05D006786 3.5e-14 81.6 42 90.5
THA.LOC104804457 Tarenaya hassleriana HOM05D005018 ORTHO05D006786 3.5e-14 81.6 57 75.4
unitig_0.g220 Utricularia gibba HOM05D005018 ORTHO05D006786 3.5e-14 81.6 41 95.1
HPP92_016130 Vanilla planifolia HOM05D005018 ORTHO05D006786 3.5e-14 81.6 109 47.7
AUR62006851 Chenopodium quinoa HOM05D005018 ORTHO05D006786 4.6e-14 81.3 41 92.7
Dinv15533 Davidia involucrata HOM05D005018 ORTHO05D006786 4.6e-14 81.3 43 88.4
FAN10G3591 Fragaria x ananassa HOM05D005018 ORTHO05D006786 4.6e-14 81.3 42 90.5
CiPaw.03G118700 Carya illinoinensis HOM05D005018 ORTHO05D006786 6.0e-14 80.9 83 56.6
Duzib264G1136 Durio zibethinus HOM05D005018 ORTHO05D006786 7.9e-14 80.5 42 88.1
MD07G1060500 Malus domestica HOM05D005018 ORTHO05D006786 7.9e-14 80.5 42 90.5
MD07G1060700 Malus domestica HOM05D005018 ORTHO05D006786 7.9e-14 80.5 42 90.5
PGR119G0715 Punica granatum HOM05D005018 ORTHO05D006786 7.9e-14 80.5 42 88.1
Cfa002185 Carpinus fangiana HOM05D005018 ORTHO05D006786 1.0e-13 80.1 41 92.7
Sabra05G0054700 Salix brachista HOM05D005018 ORTHO05D006786 1.0e-13 80.1 39 97.4
Thhalv10022575m.g Eutrema salsugineum HOM05D005018 ORTHO05D006786 1.3e-13 79.7 67 62.7
MD02G1260800 Malus domestica HOM05D005018 ORTHO05D006786 1.3e-13 79.7 42 88.1
Oeu026684.1 Olea europaea HOM05D005018 ORTHO05D006786 1.3e-13 79.7 102 49.0
CARHR104850 Cardamine hirsuta HOM05D005018 ORTHO05D006786 1.8e-13 79.3 67 61.2
BcaB08g34530 Brassica carinata HOM05D005018 ORTHO05D006786 2.3e-13 79.0 78 57.7
BraA03t13631Z Brassica rapa HOM05D005018 ORTHO05D006786 2.3e-13 79.0 78 57.7
CBR_g18682 Chara braunii HOM05D005018 ORTHO05D006786 2.3e-13 79.0 41 87.8
Mapoly0069s0053 Marchantia polymorpha HOM05D005018 ORTHO05D006786 2.3e-13 79.0 41 87.8
SMO139G0120 Selaginella moellendorffii HOM05D005018 ORTHO05D006786 2.3e-13 79.0 42 85.7
Carub.0003s2795 Capsella rubella HOM05D005018 ORTHO05D006786 3.0e-13 78.6 67 62.7
Cre10.g428678 Chlamydomonas reinhardtii HOM05D005018 ORTHO05D006786 3.0e-13 78.6 58 69.0
BcaC01g03124 Brassica carinata HOM05D005018 ORTHO05D006786 3.9e-13 78.2 79 57.0
A03p44940 Brassica napus HOM05D005018 ORTHO05D006786 3.9e-13 78.2 52 75.0
C03p55820 Brassica napus HOM05D005018 ORTHO05D006786 3.9e-13 78.2 79 57.0
BolC3t17863H Brassica oleracea HOM05D005018 ORTHO05D006786 3.9e-13 78.2 79 57.0
Sp3g26900 Schrenkiella parvula HOM05D005018 ORTHO05D006786 8.7e-13 77.0 40 92.5
MCO09G341 Micromonas commoda HOM05D005018 ORTHO05D006786 4.8e-11 71.2 42 78.6
Ca_28668_v3 Cicer arietinum L. HOM05D005018 ORTHO05D006786 3.6e-06 55.1 39 59.0
Haze_26659 Corylus avellana HOM05D005018 ORTHO05D006786 7.9e-06 53.9 56 50.0


User provided reference genes

Program Settings