Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SEGI_25900 Sequoiadendron giganteum HOM05D003767 ORTHO05D004507 3.4e-138 495.0 246 100.0
Lj1g0009738 Lotus japonicus HOM05D003767 ORTHO05D004507 7.0e-59 231.5 152 73.0
Actinidia23606 Actinidia chinensis HOM05D003767 ORTHO05D004507 9.2e-59 231.1 186 60.8
Haze_04251 Corylus avellana HOM05D003767 ORTHO05D004507 1.2e-58 230.7 175 62.9
THA.LOC104821704 Tarenaya hassleriana HOM05D003767 ORTHO05D004507 1.2e-58 230.7 171 63.7
Ciclev10000728m.g Citrus clementina HOM05D003767 ORTHO05D004507 2.7e-58 229.6 162 67.3
MD12G1224500 Malus domestica HOM05D003767 ORTHO05D004507 2.7e-58 229.6 193 59.1
TPR.G33164 Trifolium pratense HOM05D003767 ORTHO05D004507 5.9e-58 228.4 157 68.8
Duzib147G0043 Durio zibethinus HOM05D003767 ORTHO05D004507 7.8e-58 228.0 165 65.5
Sc09g0003380 Simmondsia chinensis HOM05D003767 ORTHO05D004507 7.8e-58 228.0 175 64.6
DCAR_029443 Daucus carota HOM05D003767 ORTHO05D004507 1.0e-57 227.6 159 67.9
PSO832G1867 Papaver somniferum HOM05D003767 ORTHO05D004507 1.0e-57 227.6 207 57.5
Prupe.6G331000 Prunus persica HOM05D003767 ORTHO05D004507 1.0e-57 227.6 193 58.0
TAR365G0614 Trochodendron aralioides HOM05D003767 ORTHO05D004507 1.0e-57 227.6 201 58.2
MBI17_g18114_MAGBIO Magnolia biondii HOM05D003767 ORTHO05D004507 1.7e-57 226.9 169 65.1
Medtr7g113890 Medicago truncatula HOM05D003767 ORTHO05D004507 1.7e-57 226.9 178 62.9
Lalb_Chr15g0077061 Lupinus albus HOM05D003767 ORTHO05D004507 3.0e-57 226.1 173 60.7
QL03p004251 Quercus lobata HOM05D003767 ORTHO05D004507 3.0e-57 226.1 177 62.1
Lsat_1_v5_gn_2_64341 Lactuca sativa HOM05D003767 ORTHO05D004507 3.9e-57 225.7 166 66.9
arahy.Tifrunner.gnm1.ann1.1T3PYK Arachis hypogaea HOM05D003767 ORTHO05D004507 5.0e-57 225.3 152 71.1
CANSAT54G0870 Cannabis sativa HOM05D003767 ORTHO05D004507 5.0e-57 225.3 179 62.0
Cc02_g32590 Coffea canephora HOM05D003767 ORTHO05D004507 5.0e-57 225.3 194 59.3
DCAR_005538 Daucus carota HOM05D003767 ORTHO05D004507 5.0e-57 225.3 154 69.5
Eucgr.H04452 Eucalyptus grandis HOM05D003767 ORTHO05D004507 5.0e-57 225.3 175 62.9
PSO210G1178 Papaver somniferum HOM05D003767 ORTHO05D004507 5.0e-57 225.3 207 56.5
HanXRQChr14g0446471 Helianthus annuus HOM05D003767 ORTHO05D004507 6.6e-57 224.9 159 67.3
Hma1.2p1_0666F.1_g199390 Hydrangea macrophylla HOM05D003767 ORTHO05D004507 6.6e-57 224.9 159 67.9
SGA_v2.0_scaffold13G06464 Striga asiatica HOM05D003767 ORTHO05D004507 6.6e-57 224.9 154 70.1
SGA_v2.0_scaffold499G52492 Striga asiatica HOM05D003767 ORTHO05D004507 6.6e-57 224.9 154 70.1
Potri.005G038100 Populus trichocarpa HOM05D003767 ORTHO05D004507 1.1e-56 224.2 161 65.2
Thecc.02G212900 Theobroma cacao HOM05D003767 ORTHO05D004507 1.1e-56 224.2 167 63.5
arahy.Tifrunner.gnm1.ann1.RYM43V Arachis hypogaea HOM05D003767 ORTHO05D004507 1.5e-56 223.8 152 70.4
MD04G1210100 Malus domestica HOM05D003767 ORTHO05D004507 1.5e-56 223.8 193 58.0
vmacro05036 Vaccinium macrocarpon HOM05D003767 ORTHO05D004507 1.5e-56 223.8 199 55.8
MSTRG.8108 Avicennia marina HOM05D003767 ORTHO05D004507 1.9e-56 223.4 173 63.0
COL.COLO4_12128 Corchorus olitorius HOM05D003767 ORTHO05D004507 2.5e-56 223.0 166 64.5
MELO3C015345.2 Cucumis melo HOM05D003767 ORTHO05D004507 2.5e-56 223.0 223 52.5
DCAR_002932 Daucus carota HOM05D003767 ORTHO05D004507 2.5e-56 223.0 154 68.8
Migut.F01584 Erythranthe guttata HOM05D003767 ORTHO05D004507 2.5e-56 223.0 159 66.0
Potri.013G026800 Populus trichocarpa HOM05D003767 ORTHO05D004507 2.5e-56 223.0 158 66.5
Sabra05G0037900 Salix brachista HOM05D003767 ORTHO05D004507 2.5e-56 223.0 159 66.7
Hund07038 Selenicereus undatus HOM05D003767 ORTHO05D004507 2.5e-56 223.0 165 65.5
TWI56G0745 Tripterygium wilfordii HOM05D003767 ORTHO05D004507 2.5e-56 223.0 180 61.1
CARHR185970 Cardamine hirsuta HOM05D003767 ORTHO05D004507 3.3e-56 222.6 152 67.1
Gohir.D11G232600 Gossypium hirsutum HOM05D003767 ORTHO05D004507 3.3e-56 222.6 164 64.0
Lj9A681G36 Lonicera japonica HOM05D003767 ORTHO05D004507 3.3e-56 222.6 147 71.4
HanXRQChr10g0295071 Helianthus annuus HOM05D003767 ORTHO05D004507 4.3e-56 222.2 166 65.1
Manes.09G162900 Manihot esculenta HOM05D003767 ORTHO05D004507 4.3e-56 222.2 184 58.7
ATR0626G021 Amborella trichopoda HOM05D003767 ORTHO05D004507 7.3e-56 221.5 176 61.4
Gohir.A11G224810 Gossypium hirsutum HOM05D003767 ORTHO05D004507 7.3e-56 221.5 154 67.5
Aqoxy5G00559 Aquilegia oxysepala HOM05D003767 ORTHO05D004507 9.5e-56 221.1 195 56.4
CiPaw.08G167300 Carya illinoinensis HOM05D003767 ORTHO05D004507 9.5e-56 221.1 175 61.1
Cfa006539 Carpinus fangiana HOM05D003767 ORTHO05D004507 1.6e-55 220.3 173 62.4
Psat3g009920 Pisum sativum HOM05D003767 ORTHO05D004507 1.6e-55 220.3 169 59.2
A09p05240 Brassica napus HOM05D003767 ORTHO05D004507 2.1e-55 219.9 161 64.0
BraA09t36163Z Brassica rapa HOM05D003767 ORTHO05D004507 2.1e-55 219.9 161 64.0
Thhalv10003956m.g Eutrema salsugineum HOM05D003767 ORTHO05D004507 2.1e-55 219.9 171 60.8
Os12g0528400 Oryza sativa ssp. japonica HOM05D003767 ORTHO05D004507 2.1e-55 219.9 157 66.9
Sp2g20600 Schrenkiella parvula HOM05D003767 ORTHO05D004507 2.1e-55 219.9 152 65.8
Aa31LG11G9150 Aethionema arabicum HOM05D003767 ORTHO05D004507 2.8e-55 219.5 152 67.1
BcaB04g19665 Brassica carinata HOM05D003767 ORTHO05D004507 2.8e-55 219.5 161 63.4
Lj1g0000488 Lotus japonicus HOM05D003767 ORTHO05D004507 3.6e-55 219.2 161 62.1
TPR.G33204 Trifolium pratense HOM05D003767 ORTHO05D004507 3.6e-55 219.2 168 60.1
ECA238G2357 Erigeron canadensis HOM05D003767 ORTHO05D004507 4.7e-55 218.8 162 63.6
Gorai.003G066300 Gossypium raimondii HOM05D003767 ORTHO05D004507 4.7e-55 218.8 168 62.5
SalBow6G1775 Salvia bowleyana HOM05D003767 ORTHO05D003551 4.7e-55 218.8 171 62.6
EL10Ac4g09299 Beta vulgaris HOM05D003767 ORTHO05D004507 6.2e-55 218.4 158 66.5
CAN.G1134.12 Capsicum annuum HOM05D003767 ORTHO05D004507 8.0e-55 218.0 177 62.1
Psat3g009360 Pisum sativum HOM05D003767 ORTHO05D004507 8.0e-55 218.0 145 71.7
PGR031G1040 Punica granatum HOM05D003767 ORTHO05D004507 8.0e-55 218.0 158 67.1
CSS0020414 Camellia sinensis var. sinensis HOM05D003767 ORTHO05D004507 1.0e-54 217.6 174 60.9
ClCG03G016760 Citrullus lanatus HOM05D003767 ORTHO05D004507 1.0e-54 217.6 190 57.9
BcaC04g23683 Brassica carinata HOM05D003767 ORTHO05D004507 1.4e-54 217.2 161 62.7
Manes.08G123500 Manihot esculenta HOM05D003767 ORTHO05D004507 1.4e-54 217.2 161 64.0
GSVIVG01022056001 Vitis vinifera HOM05D003767 ORTHO05D004507 1.4e-54 217.2 147 70.1
Glyma.19G237800 Glycine max HOM05D003767 ORTHO05D004507 1.8e-54 216.9 145 71.7
Aqoxy2G03198 Aquilegia oxysepala HOM05D003767 ORTHO05D004507 2.3e-54 216.5 194 57.7
AL6G39640 Arabidopsis lyrata HOM05D003767 ORTHO05D004507 2.3e-54 216.5 174 59.8
BcaNung02467 Brassica carinata HOM05D003767 ORTHO05D004507 2.3e-54 216.5 152 65.8
C07p40700 Brassica napus HOM05D003767 ORTHO05D004507 2.3e-54 216.5 152 65.8
C09p05700 Brassica napus HOM05D003767 ORTHO05D004507 2.3e-54 216.5 161 62.7
BolC9t53499H Brassica oleracea HOM05D003767 ORTHO05D004507 2.3e-54 216.5 161 62.7
Ca_09376_v3 Cicer arietinum L. HOM05D003767 ORTHO05D004507 2.3e-54 216.5 145 73.1
CsaV3_1G039210 Cucumis sativus L. HOM05D003767 ORTHO05D004507 3.1e-54 216.1 192 56.8
CSS0005723 Camellia sinensis var. sinensis HOM05D003767 ORTHO05D004507 4.0e-54 215.7 174 60.3
AUR62000859 Chenopodium quinoa HOM05D003767 ORTHO05D004507 5.2e-54 215.3 169 63.3
Nitab4.5_0004940g0030 Nicotiana tabacum HOM05D003767 ORTHO05D004507 5.2e-54 215.3 170 63.5
Lalb_Chr18g0045501 Lupinus albus HOM05D003767 ORTHO05D004507 6.8e-54 214.9 170 61.2
AT5G27380 Arabidopsis thaliana HOM05D003767 ORTHO05D004507 1.2e-53 214.2 171 59.6
PGSC0003DMG400028599 Solanum tuberosum HOM05D003767 ORTHO05D004507 1.5e-53 213.8 170 62.4
A06p37610 Brassica napus HOM05D003767 ORTHO05D004507 2.0e-53 213.4 152 65.1
Glyma.19G237900 Glycine max HOM05D003767 ORTHO05D004507 2.0e-53 213.4 145 68.3
Medtr7g113880 Medicago truncatula HOM05D003767 ORTHO05D004507 2.0e-53 213.4 194 54.6
Solyc01g098610.4 Solanum lycopersicum HOM05D003767 ORTHO05D004507 2.0e-53 213.4 170 62.9
BolC7t44598H Brassica oleracea HOM05D003767 ORTHO05D004507 2.6e-53 213.0 152 65.1
BraA06t26680Z Brassica rapa HOM05D003767 ORTHO05D004507 2.6e-53 213.0 152 65.1
Os11g0642800 Oryza sativa ssp. japonica HOM05D003767 ORTHO05D004507 2.6e-53 213.0 184 58.2
unitig_26.g9470 Utricularia gibba HOM05D003767 ORTHO05D004507 2.6e-53 213.0 154 66.9
VMungo0540G2112 Vigna mungo HOM05D003767 ORTHO05D004507 5.8e-53 211.8 159 62.9
FAN02G0487 Fragaria x ananassa HOM05D003767 ORTHO05D004507 7.5e-53 211.5 214 50.9
Sopen01g042160 Solanum pennellii HOM05D003767 ORTHO05D004507 7.5e-53 211.5 170 61.8
FvH4_6g05260 Fragaria vesca HOM05D003767 ORTHO05D004507 2.9e-52 209.5 204 51.5
Phvul.006G094700 Phaseolus vulgaris HOM05D003767 ORTHO05D004507 2.9e-52 209.5 152 66.4
RcHm_v2.0_Chr3g0453991 Rosa chinensis HOM05D003767 ORTHO05D004507 3.7e-52 209.1 214 50.5
BcaNung04364 Brassica carinata HOM05D003767 ORTHO05D004507 4.9e-52 208.8 152 64.5
Carub.0006s2517 Capsella rubella HOM05D003767 ORTHO05D004507 4.9e-52 208.8 152 63.8
FAN05G2944 Fragaria x ananassa HOM05D003767 ORTHO05D004507 4.9e-52 208.8 177 58.8
Glyma.19G237700 Glycine max HOM05D003767 ORTHO05D004507 4.9e-52 208.8 190 54.2
ECA238G1346 Erigeron canadensis HOM05D003767 ORTHO05D004507 6.4e-52 208.4 154 64.9
FAN14G3644 Fragaria x ananassa HOM05D003767 ORTHO05D004507 6.4e-52 208.4 204 51.0
Glyma.03G240600 Glycine max HOM05D003767 ORTHO05D004507 6.4e-52 208.4 183 54.6
Oeu027914.1 Olea europaea HOM05D003767 ORTHO05D004507 8.3e-52 208.0 185 57.8
Phvul.006G094600 Phaseolus vulgaris HOM05D003767 ORTHO05D004507 8.3e-52 208.0 159 62.9
FAN09G3025 Fragaria x ananassa HOM05D003767 ORTHO05D004507 1.1e-51 207.6 214 50.0
RhsimUnG0080300 Rhododendron simsii HOM05D003767 ORTHO05D004507 1.4e-51 207.2 215 50.7
VMungo0540G2084 Vigna mungo HOM05D003767 ORTHO05D004507 1.4e-51 207.2 145 66.9
FAN14G0860 Fragaria x ananassa HOM05D003767 ORTHO05D004507 1.9e-51 206.8 197 51.8
Phvul.006G094500 Phaseolus vulgaris HOM05D003767 ORTHO05D004507 2.4e-51 206.5 175 56.6
Ca_09375_v3 Cicer arietinum L. HOM05D003767 ORTHO05D004507 4.1e-51 205.7 152 62.5
Sed0026847 Sechium edule HOM05D003767 ORTHO05D004507 4.1e-51 205.7 175 58.3
Peaxi162Scf00434g00336 Petunia axillaris HOM05D003767 ORTHO05D004507 5.4e-51 205.3 176 58.5
Rhsim07G0179200 Rhododendron simsii HOM05D003767 ORTHO05D004507 5.4e-51 205.3 208 51.0
VMungo0540G0577 Vigna mungo HOM05D003767 ORTHO05D004507 1.2e-50 204.1 170 57.1
Mapoly0002s0041 Marchantia polymorpha HOM05D003767 ORTHO05D004507 6.0e-50 201.8 158 60.1
Os12g0263000 Oryza sativa ssp. japonica HOM05D003767 ORTHO05D004507 6.0e-50 201.8 224 49.6
AUR62005115 Chenopodium quinoa HOM05D003767 ORTHO05D004507 3.3e-48 196.1 195 53.8
COL.COLO4_24985 Corchorus olitorius HOM05D003767 ORTHO05D004507 6.2e-47 191.8 146 65.1
Pp3c1_36280 Physcomitrium patens HOM05D003767 ORTHO05D004507 1.2e-45 187.6 154 58.4
SMO271G0026 Selaginella moellendorffii HOM05D003767 ORTHO05D004507 3.4e-45 186.0 157 59.9
AagrBONN_evm.TU.Sc2ySwM_117.2518 Anthoceros agrestis HOM05D003767 ORTHO05D004507 2.9e-44 183.0 162 57.4
CBR_g15993 Chara braunii HOM05D003767 ORTHO05D004507 4.1e-35 152.5 150 48.7
COL.COLO4_10335 Corchorus olitorius HOM05D003767 ORTHO05D004507 2.8e-31 139.8 132 57.6
PRCOL_00004575 Prasinoderma coloniale HOM05D003767 ORTHO05D004507 8.9e-30 134.8 152 48.7
Cpa.g.sc48.5 Carica papaya HOM05D003767 ORTHO05D004507 2.2e-28 130.2 175 44.0
A10p14120 Brassica napus HOM05D000085 ORTHO05D001756 3.2e-27 126.3 131 45.0
Zm00001eb126550 Zea mays HOM05D003767 ORTHO05D004507 3.5e-26 122.9 102 60.8
Actinidia05727 Actinidia chinensis HOM05D003767 ORTHO05D004507 4.6e-26 122.5 164 45.1
Ah.06g190170 Amaranthus hybridus HOM05D003767 ORTHO05D004507 1.3e-25 120.9 88 61.4
FAN05G1904 Fragaria x ananassa HOM05D003767 ORTHO05D004507 1.3e-25 120.9 165 38.8
SGA_v2.0_scaffold71G23819 Striga asiatica HOM05D001920 ORTHO05D004895 1.3e-25 120.9 81 67.9
Zm00001eb137820 Zea mays HOM05D003767 ORTHO05D004507 3.0e-25 119.8 83 72.3
Cre17.g708800 Chlamydomonas reinhardtii HOM05D003767 ORTHO05D004507 6.9e-22 108.6 152 41.4
HPP92_001826 Vanilla planifolia HOM05D003767 ORTHO05D004507 9.0e-22 108.2 85 69.4
Nn1g08361 Nelumbo nucifera HOM05D003767 ORTHO05D004507 5.8e-21 105.5 71 73.2
Zm00001eb115470 Zea mays HOM05D003767 ORTHO05D004507 1.4e-19 100.9 85 58.8
MCO07G639 Micromonas commoda HOM05D003767 ORTHO05D004507 1.6e-18 97.4 111 44.1
RcHm_v2.0_Chr2g0172981 Rosa chinensis HOM05D003767 ORTHO05D004507 2.7e-18 96.7 173 32.9
BcaC05g27416 Brassica carinata HOM05D003767 ORTHO05D004507 6.0e-18 95.5 116 45.7
A10p03590 Brassica napus HOM05D003767 ORTHO05D004507 6.7e-17 92.0 62 59.7
Zm00001eb275300 Zea mays HOM05D003767 ORTHO05D004507 8.7e-17 91.7 80 55.0
CSS0007130 Camellia sinensis var. sinensis HOM05D003767 ORTHO05D004507 2.4e-14 83.6 57 70.2
Nitab4.5_0001423g0150 Nicotiana tabacum HOM05D003767 ORTHO05D004507 4.0e-14 82.8 53 77.4
Cfa024552 Carpinus fangiana HOM05D003767 ORTHO05D004507 5.3e-14 82.4 184 30.4
VMungo0540G1019 Vigna mungo HOM05D003767 ORTHO05D004507 2.0e-13 80.5 76 43.4
Zm00001eb115490 Zea mays HOM05D003767 ORTHO05D004507 2.6e-13 80.1 50 78.0
Glyma.03G240651 Glycine max HOM05D003767 ORTHO05D004507 1.3e-12 77.8 75 50.7
C05p33690 Brassica napus HOM05D003767 ORTHO05D041347 1.4e-11 74.3 97 43.3
BolC5t32099H Brassica oleracea HOM05D003767 ORTHO05D041347 1.4e-11 74.3 97 43.3
Atru.chr2.496 Acer truncatum HOM05D003767 ORTHO05D004507 1.9e-11 73.9 55 65.5
RcHm_v2.0_Chr6g0303351 Rosa chinensis HOM05D003767 ORTHO05D004507 5.1e-09 65.9 47 63.8


User provided reference genes

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