Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SEGI_25622 Sequoiadendron giganteum HOM05D003236 ORTHO05D003620 9.2e-78 293.5 150 100.0
SEGI_35775 Sequoiadendron giganteum HOM05D003236 ORTHO05D003620 1.4e-54 216.5 148 74.3
SEGI_06569 Sequoiadendron giganteum HOM05D003236 ORTHO05D003620 2.4e-54 215.7 147 73.5
SEGI_08494 Sequoiadendron giganteum HOM05D003236 ORTHO05D003620 2.1e-53 212.6 148 73.0
SEGI_04804 Sequoiadendron giganteum HOM05D003236 ORTHO05D003620 7.8e-53 210.7 147 72.8
SEGI_05055 Sequoiadendron giganteum HOM05D003236 ORTHO05D003620 4.3e-51 204.9 148 69.6
SEGI_34419 Sequoiadendron giganteum HOM05D003236 ORTHO05D003620 1.2e-50 203.4 147 70.1
SEGI_18906 Sequoiadendron giganteum HOM05D003236 ORTHO05D003620 1.6e-50 203.0 148 70.9
SEGI_22901 Sequoiadendron giganteum HOM05D003236 ORTHO05D003620 1.6e-50 203.0 148 70.3
SEGI_14042 Sequoiadendron giganteum HOM05D003236 ORTHO05D003620 3.5e-45 185.3 143 65.0
SEGI_05385 Sequoiadendron giganteum HOM05D003236 ORTHO05D003620 9.0e-25 117.5 141 43.3
Mapoly0079s0060 Marchantia polymorpha HOM05D003236 ORTHO05D003620 1.5e-24 116.7 150 42.0
SEGI_08716 Sequoiadendron giganteum HOM05D003236 ORTHO05D003620 3.4e-24 115.5 139 42.4
SEGI_08502 Sequoiadendron giganteum HOM05D003236 ORTHO05D003620 1.7e-23 113.2 136 41.9
AagrBONN_evm.TU.Sc2ySwM_228.2160 Anthoceros agrestis HOM05D003236 ORTHO05D003620 2.1e-21 106.3 138 38.4
Pp3c23_10340 Physcomitrium patens HOM05D003236 ORTHO05D003620 1.0e-20 104.0 140 37.9
Pp3c10_24980 Physcomitrium patens HOM05D003236 ORTHO05D003620 3.9e-20 102.1 140 33.6
SEGI_14847 Sequoiadendron giganteum HOM05D003236 ORTHO05D003620 5.1e-20 101.7 138 44.2
SEGI_22279 Sequoiadendron giganteum HOM05D003236 ORTHO05D003620 5.7e-19 98.2 138 34.1
SEGI_20999 Sequoiadendron giganteum HOM05D003236 ORTHO05D003620 7.4e-19 97.8 138 34.1
SEGI_14122 Sequoiadendron giganteum HOM05D003236 ORTHO05D003620 1.3e-18 97.1 133 38.3
Pp3c22_10520 Physcomitrium patens HOM05D003236 ORTHO05D003620 1.5e-16 90.1 137 38.0
Pp3c24_3340 Physcomitrium patens HOM05D003236 ORTHO05D003620 4.5e-16 88.6 122 37.7
AagrBONN_evm.TU.Sc2ySwM_228.2162 Anthoceros agrestis HOM05D003236 ORTHO05D003620 2.7e-13 79.3 147 34.0
HanXRQChr01g0028881 Helianthus annuus HOM05D003236 ORTHO05D003620 1.7e-10 70.1 133 32.3
Nitab4.5_0006333g0030 Nicotiana tabacum HOM05D003236 ORTHO05D003620 1.7e-10 70.1 134 32.1
Lsat_1_v5_gn_1_50180 Lactuca sativa HOM05D003236 ORTHO05D003620 3.7e-10 68.9 133 34.6
Nitab4.5_0000321g0010 Nicotiana tabacum HOM05D003236 ORTHO05D003620 3.7e-10 68.9 134 31.3
Duzib187G1207 Durio zibethinus HOM05D003236 ORTHO05D003620 6.3e-10 68.2 131 33.6
Gohir.D04G078600 Gossypium hirsutum HOM05D003236 ORTHO05D003620 6.3e-10 68.2 131 32.1
Gorai.012G088500 Gossypium raimondii HOM05D003236 ORTHO05D003620 6.3e-10 68.2 131 32.1
Gorai.N027600 Gossypium raimondii HOM05D003236 ORTHO05D003620 6.3e-10 68.2 131 34.4
Gohir.D05G232800 Gossypium hirsutum HOM05D003236 ORTHO05D003620 8.2e-10 67.8 131 33.6
Gorai.009G240900 Gossypium raimondii HOM05D003236 ORTHO05D003620 8.2e-10 67.8 131 34.4
Gohir.A05G230300 Gossypium hirsutum HOM05D003236 ORTHO05D003620 1.1e-09 67.4 131 34.4
PSO832G4100 Papaver somniferum HOM05D003236 ORTHO05D003620 1.1e-09 67.4 129 32.6
SEGI_23586 Sequoiadendron giganteum HOM05D003236 ORTHO05D003620 1.1e-09 67.4 132 31.1
Thecc.04G030700 Theobroma cacao HOM05D003236 ORTHO05D003620 1.1e-09 67.4 131 33.6
Os02g0701900 Oryza sativa ssp. japonica HOM05D003236 ORTHO05D003620 1.4e-09 67.0 144 28.5
Peaxi162Scf00069g01432 Petunia axillaris HOM05D003236 ORTHO05D003620 1.4e-09 67.0 137 29.9
TAR633G2542 Trochodendron aralioides HOM05D003236 ORTHO05D003620 1.4e-09 67.0 135 31.9
Duzib147G0300 Durio zibethinus HOM05D003236 ORTHO05D003620 1.8e-09 66.6 135 31.1
Aa31LG5G16550 Aethionema arabicum HOM05D003236 ORTHO05D003620 2.4e-09 66.2 134 30.6
Nitab4.5_0008223g0010 Nicotiana tabacum HOM05D003236 ORTHO05D003620 2.4e-09 66.2 134 32.1
Cpa.g.sc125.28 Carica papaya HOM05D003236 ORTHO05D003620 3.1e-09 65.9 132 31.1
Cre17.g702750 Chlamydomonas reinhardtii HOM05D003236 ORTHO05D003620 3.1e-09 65.9 145 31.7
COL.COLO4_20849 Corchorus olitorius HOM05D003236 ORTHO05D003620 3.1e-09 65.9 131 33.6
Gohir.D05G232700 Gossypium hirsutum HOM05D003236 ORTHO05D003620 3.1e-09 65.9 131 33.6
PSO017G3704 Papaver somniferum HOM05D003236 ORTHO05D003620 3.1e-09 65.9 135 31.9
Sp3g05010 Schrenkiella parvula HOM05D003236 ORTHO05D003620 3.1e-09 65.9 134 32.8
PSO210G7458 Papaver somniferum HOM05D003236 ORTHO05D003620 4.1e-09 65.5 129 31.0
COL.COLO4_05385 Corchorus olitorius HOM05D003236 ORTHO05D003620 5.3e-09 65.1 131 33.6
Duzib114G0214 Durio zibethinus HOM05D003236 ORTHO05D003620 5.3e-09 65.1 131 31.3
Duzib147G0392 Durio zibethinus HOM05D003236 ORTHO05D003620 5.3e-09 65.1 132 31.8
Hma1.2p1_0995F.1_g245780 Hydrangea macrophylla HOM05D003236 ORTHO05D003620 5.3e-09 65.1 141 31.2
A05p41940 Brassica napus HOM05D003236 ORTHO05D003620 6.9e-09 64.7 134 30.6
BraA05t22916Z Brassica rapa HOM05D003236 ORTHO05D003620 6.9e-09 64.7 134 30.6
COL.COLO4_05384 Corchorus olitorius HOM05D003236 ORTHO05D003620 6.9e-09 64.7 139 31.7
Duzib199G0002 Durio zibethinus HOM05D003236 ORTHO05D003620 6.9e-09 64.7 131 30.5
Gohir.A05G340100 Gossypium hirsutum HOM05D003236 ORTHO05D003620 6.9e-09 64.7 131 31.3
PSO478G0559 Papaver somniferum HOM05D003236 ORTHO05D003620 6.9e-09 64.7 135 31.1
Thecc.04G224800 Theobroma cacao HOM05D003236 ORTHO05D003620 6.9e-09 64.7 131 35.1
Mapoly0005s0172 Marchantia polymorpha HOM05D003236 ORTHO05D003620 9.1e-09 64.3 151 28.5
PGSC0003DMG402004220 Solanum tuberosum HOM05D003236 ORTHO05D003620 9.1e-09 64.3 132 31.1
Solyc06g054330.3 Solanum lycopersicum HOM05D003236 ORTHO05D003620 1.2e-08 63.9 132 30.3
Sopen06g019440 Solanum pennellii HOM05D003236 ORTHO05D003620 1.2e-08 63.9 132 30.3
Aqoxy2G03298 Aquilegia oxysepala HOM05D003236 ORTHO05D003620 1.5e-08 63.5 130 29.2
COL.COLO4_08743 Corchorus olitorius HOM05D003236 ORTHO05D003620 1.5e-08 63.5 132 30.3
CsaV3_3G013580 Cucumis sativus L. HOM05D003236 ORTHO05D003620 1.5e-08 63.5 136 30.9
Thecc.04G224900 Theobroma cacao HOM05D003236 ORTHO05D003620 1.5e-08 63.5 138 29.0
CAN.G851.10 Capsicum annuum HOM05D003236 ORTHO05D003620 2.0e-08 63.2 132 30.3
FAN04G3165 Fragaria x ananassa HOM05D003236 ORTHO05D003620 2.0e-08 63.2 131 32.1
SalBow2G2662 Salvia bowleyana HOM05D003236 ORTHO05D003620 2.0e-08 63.2 134 29.9
Sopen01g016440 Solanum pennellii HOM05D003236 ORTHO05D003620 2.0e-08 63.2 132 30.3
BcaC05g30061 Brassica carinata HOM05D003236 ORTHO05D003620 2.6e-08 62.8 134 30.6
Carub.0003s0550 Capsella rubella HOM05D003236 ORTHO05D003620 2.6e-08 62.8 131 32.1
Migut.G00306 Erythranthe guttata HOM05D003236 ORTHO05D003620 2.6e-08 62.8 134 30.6
Thhalv10021124m.g Eutrema salsugineum HOM05D003236 ORTHO05D003620 2.6e-08 62.8 131 32.1
FAN08G2949 Fragaria x ananassa HOM05D003236 ORTHO05D003620 2.6e-08 62.8 131 32.1
Sc13g0004130 Simmondsia chinensis HOM05D003236 ORTHO05D003620 2.6e-08 62.8 137 31.4
AT3G06060 Arabidopsis thaliana HOM05D003236 ORTHO05D003620 3.4e-08 62.4 131 31.3
CARHR080570 Cardamine hirsuta HOM05D003236 ORTHO05D003620 3.4e-08 62.4 131 32.1
FAN12G2674 Fragaria x ananassa HOM05D003236 ORTHO05D003620 3.4e-08 62.4 134 30.6
PGSC0003DMG401011813 Solanum tuberosum HOM05D003236 ORTHO05D003620 3.4e-08 62.4 132 30.3
BolC5t34779H Brassica oleracea HOM05D003236 ORTHO05D003620 4.5e-08 62.0 134 29.9
ECA248G2845 Erigeron canadensis HOM05D003236 ORTHO05D003620 4.5e-08 62.0 131 31.3
Sed0022772 Sechium edule HOM05D003236 ORTHO05D003620 4.5e-08 62.0 132 30.3
Actinidia23501 Actinidia chinensis HOM05D003236 ORTHO05D003620 5.9e-08 61.6 131 29.8
CSS0018012 Camellia sinensis var. sinensis HOM05D003236 ORTHO05D003620 5.9e-08 61.6 135 30.4
COL.COLO4_20855 Corchorus olitorius HOM05D003236 ORTHO05D003620 5.9e-08 61.6 128 33.6
Dinv38409 Davidia involucrata HOM05D003236 ORTHO05D003620 5.9e-08 61.6 137 30.7
FvH4_4g14820 Fragaria vesca HOM05D003236 ORTHO05D003620 5.9e-08 61.6 130 31.5
Lj6g0023183 Lotus japonicus HOM05D003236 ORTHO05D003620 5.9e-08 61.6 131 30.5
Nn4g26225 Nelumbo nucifera HOM05D003236 ORTHO05D003620 5.9e-08 61.6 138 30.4
C05p61190 Brassica napus HOM05D003236 ORTHO05D003620 7.7e-08 61.2 134 29.9
MELO3C006553.2 Cucumis melo HOM05D003236 ORTHO05D003620 7.7e-08 61.2 139 30.2
RcHm_v2.0_Chr4g0417501 Rosa chinensis HOM05D003236 ORTHO05D003620 7.7e-08 61.2 131 32.1
Sed0017985 Sechium edule HOM05D003236 ORTHO05D003620 1.0e-07 60.8 131 29.8
THA.LOC104818806 Tarenaya hassleriana HOM05D003236 ORTHO05D003620 1.0e-07 60.8 131 29.8
THA.LOC104822305 Tarenaya hassleriana HOM05D003236 ORTHO05D003620 1.0e-07 60.8 134 29.9
HPP92_015138 Vanilla planifolia HOM05D003236 ORTHO05D003620 1.0e-07 60.8 136 28.7
Zm00001eb188220 Zea mays HOM05D003236 ORTHO05D003620 1.0e-07 60.8 144 28.5
Migut.N00158 Erythranthe guttata HOM05D003236 ORTHO05D003620 1.3e-07 60.5 134 29.9
TPR.G7640 Trifolium pratense HOM05D003236 ORTHO05D003620 1.3e-07 60.5 131 30.5
Eucgr.B01113 Eucalyptus grandis HOM05D003236 ORTHO05D003620 1.7e-07 60.1 132 31.1
AagrBONN_evm.TU.Sc2ySwM_344.2320 Anthoceros agrestis HOM05D003236 ORTHO05D003620 2.2e-07 59.7 131 30.5
AL6G30650 Arabidopsis lyrata HOM05D003236 ORTHO05D003620 2.2e-07 59.7 134 28.4
AT5G19200 Arabidopsis thaliana HOM05D003236 ORTHO05D003620 2.2e-07 59.7 131 30.5
COL.COLO4_26632 Corchorus olitorius HOM05D003236 ORTHO05D003620 2.2e-07 59.7 132 29.5
Eucgr.B01114 Eucalyptus grandis HOM05D003236 ORTHO05D003620 2.2e-07 59.7 139 30.2
Lj3P750T44 Lonicera japonica HOM05D003236 ORTHO05D003620 2.2e-07 59.7 131 26.7
Medtr2g022600 Medicago truncatula HOM05D003236 ORTHO05D003620 2.2e-07 59.7 128 31.2
SGA_v2.0_scaffold166G38366 Striga asiatica HOM05D003236 ORTHO05D003620 2.2e-07 59.7 132 28.8
TAR362G0648 Trochodendron aralioides HOM05D003236 ORTHO05D003620 2.2e-07 59.7 131 28.2
MSTRG.10005 Avicennia marina HOM05D003236 ORTHO05D003620 2.9e-07 59.3 135 29.6
COL.COLO4_20850 Corchorus olitorius HOM05D003236 ORTHO05D003620 2.9e-07 59.3 132 32.6
Lj3P716T36 Lonicera japonica HOM05D003236 ORTHO05D003620 2.9e-07 59.3 131 26.7
MBI19_g44204_MAGBIO Magnolia biondii HOM05D003236 ORTHO05D003620 2.9e-07 59.3 135 25.9
TWI53G0183 Tripterygium wilfordii HOM05D003236 ORTHO05D003620 2.9e-07 59.3 131 28.2
Zm00001eb251870 Zea mays HOM05D003236 ORTHO05D003620 2.9e-07 59.3 145 27.6
Atru.chr4.2535 Acer truncatum HOM05D003236 ORTHO05D003620 3.8e-07 58.9 131 29.0
Sabra10G0147500 Salix brachista HOM05D003236 ORTHO05D003620 3.8e-07 58.9 135 30.4
CDE05G0037 Ceratophyllum demersum HOM05D003266 ORTHO05D003718 5.0e-07 58.5 131 30.5
Dinv44493 Davidia involucrata HOM05D003236 ORTHO05D003620 5.0e-07 58.5 140 31.4
Prupe.6G171900 Prunus persica HOM05D003236 ORTHO05D003620 5.0e-07 58.5 130 29.2
Prupe.6G197600 Prunus persica HOM05D003236 ORTHO05D003620 5.0e-07 58.5 130 29.2
RcHm_v2.0_Chr6g0272881 Rosa chinensis HOM05D003236 ORTHO05D003620 5.0e-07 58.5 139 29.5
Ciclev10005413m.g Citrus clementina HOM05D003236 ORTHO05D003620 6.5e-07 58.2 131 27.5
DCAR_027180 Daucus carota HOM05D003236 ORTHO05D003620 6.5e-07 58.2 135 28.9
Psat1g182720 Pisum sativum HOM05D003236 ORTHO05D003620 6.5e-07 58.2 128 28.1
PGR142G1056 Punica granatum HOM05D003236 ORTHO05D003620 6.5e-07 58.2 132 28.0
Carub.0006s1753 Capsella rubella HOM05D003236 ORTHO05D003620 8.5e-07 57.8 134 27.6
ClCG05G011190 Citrullus lanatus HOM05D003236 ORTHO05D003620 8.5e-07 57.8 131 28.2
Potri.010G191800 Populus trichocarpa HOM05D003236 ORTHO05D003620 8.5e-07 57.8 135 28.9
CANSAT56G0357 Cannabis sativa HOM05D003236 ORTHO05D003620 1.1e-06 57.4 132 28.8
Lalb_Chr18g0056161 Lupinus albus HOM05D003236 ORTHO05D003620 1.1e-06 57.4 131 29.0
Manes.08G075500 Manihot esculenta HOM05D003236 ORTHO05D003620 1.1e-06 57.4 139 30.2
Sabra16G0185700 Salix brachista HOM05D003236 ORTHO05D003620 1.1e-06 57.4 135 30.4
Glyma.15G105400 Glycine max HOM05D003236 ORTHO05D003620 1.4e-06 57.0 132 27.3
Rhsim04G0203500 Rhododendron simsii HOM05D003236 ORTHO05D003620 1.4e-06 57.0 134 30.6
Hund19506 Selenicereus undatus HOM05D003236 ORTHO05D003620 1.4e-06 57.0 129 29.5
Glyma.13G207200 Glycine max HOM05D003236 ORTHO05D003620 1.9e-06 56.6 132 26.5
CiPaw.02G093600 Carya illinoinensis HOM05D003236 ORTHO05D003620 2.5e-06 56.2 128 29.7
Thhalv10014360m.g Eutrema salsugineum HOM05D003236 ORTHO05D003620 2.5e-06 56.2 134 28.4
HanXRQChr11g0351171 Helianthus annuus HOM05D003236 ORTHO05D003620 2.5e-06 56.2 133 28.6
BcaB08g36592 Brassica carinata HOM05D003236 ORTHO05D003620 3.2e-06 55.8 131 28.2
MD13G1185700 Malus domestica HOM05D003236 ORTHO05D003620 3.2e-06 55.8 134 29.1
RcHm_v2.0_Chr6g0272751 Rosa chinensis HOM05D003236 ORTHO05D003620 3.2e-06 55.8 135 31.1
ATR0626G169 Amborella trichopoda HOM05D003236 ORTHO05D003620 4.2e-06 55.5 134 27.6
MBI17_g13566_MAGBIO Magnolia biondii HOM05D003236 ORTHO05D003620 4.2e-06 55.5 142 28.9
Cfa015952 Carpinus fangiana HOM05D003236 ORTHO05D003620 5.5e-06 55.1 126 28.6
HanXRQChr10g0286501 Helianthus annuus HOM05D003236 ORTHO05D003620 5.5e-06 55.1 131 26.7
QL06p003747 Quercus lobata HOM05D003236 ORTHO05D003620 5.5e-06 55.1 137 29.2
Lalb_Chr15g0087401 Lupinus albus HOM05D003236 ORTHO05D003620 7.2e-06 54.7 131 27.5
RcHm_v2.0_Chr6g0272861 Rosa chinensis HOM05D003236 ORTHO05D003620 7.2e-06 54.7 139 28.8
arahy.Tifrunner.gnm1.ann1.4929ND Arachis hypogaea HOM05D003236 ORTHO05D003620 9.4e-06 54.3 131 28.2
arahy.Tifrunner.gnm1.ann1.IC6NPA Arachis hypogaea HOM05D000043 ORTHO05D001371 9.4e-06 54.3 131 28.2


User provided reference genes

Program Settings