Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SEGI_25528 Sequoiadendron giganteum HOM05D006175 ORTHO05D008081 0.0e+00 1080.5 531 100.0
GSVIVG01008158001 Vitis vinifera HOM05D006175 ORTHO05D008081 7.4e-223 777.3 531 69.1
Zm00001eb037700 Zea mays HOM05D006175 ORTHO05D008081 7.2e-218 760.8 526 67.3
PSO782G5703 Papaver somniferum HOM05D006175 ORTHO05D008081 1.8e-216 756.1 527 67.9
Gohir.D05G004300 Gossypium hirsutum HOM05D006175 ORTHO05D008081 2.3e-216 755.7 531 66.5
Gohir.A05G003900 Gossypium hirsutum HOM05D006175 ORTHO05D008081 1.1e-215 753.4 531 66.5
PSO063G7422 Papaver somniferum HOM05D006175 ORTHO05D008081 1.1e-215 753.4 527 67.6
Cfa020669 Carpinus fangiana HOM05D006175 ORTHO05D008081 1.7e-214 749.6 525 66.7
Duzib168G0906 Durio zibethinus HOM05D006175 ORTHO05D008081 2.8e-214 748.8 561 64.5
Ciclev10019690m.g Citrus clementina HOM05D006175 ORTHO05D008081 1.8e-213 746.1 532 66.7
Thecc.03G068300 Theobroma cacao HOM05D006175 ORTHO05D008081 1.2e-212 743.4 524 66.2
Eucgr.H00594 Eucalyptus grandis HOM05D006175 ORTHO05D008081 5.9e-212 741.1 530 65.3
Gorai.009G004100 Gossypium raimondii HOM05D006175 ORTHO05D008081 2.9e-211 738.8 536 65.7
Potri.012G039300 Populus trichocarpa HOM05D006175 ORTHO05D008081 1.9e-210 736.1 537 64.8
PGR083G2599 Punica granatum HOM05D006175 ORTHO05D008081 1.2e-209 733.4 528 65.2
CiPaw.15G150200 Carya illinoinensis HOM05D006175 ORTHO05D008081 2.1e-209 732.6 539 64.9
Os05g0160800 Oryza sativa ssp. japonica HOM05D006175 ORTHO05D008081 2.1e-209 732.6 500 68.6
TAR622G0246 Trochodendron aralioides HOM05D006175 ORTHO05D008081 4.0e-208 728.4 504 68.3
TWI60G0630 Tripterygium wilfordii HOM05D006175 ORTHO05D008081 2.6e-207 725.7 531 65.2
Cc04_g09090 Coffea canephora HOM05D006175 ORTHO05D008081 3.3e-207 725.3 531 64.2
QL10p033089 Quercus lobata HOM05D006175 ORTHO05D008081 3.3e-207 725.3 558 62.7
MELO3C001937.2 Cucumis melo HOM05D006175 ORTHO05D008081 7.5e-207 724.2 527 65.7
PGSC0003DMG400031043 Solanum tuberosum HOM05D006175 ORTHO05D008081 2.8e-206 722.2 531 65.3
Atru.chr3.1303 Acer truncatum HOM05D006175 ORTHO05D008081 4.8e-206 721.5 531 64.4
CANSAT01G2997 Cannabis sativa HOM05D006175 ORTHO05D008081 8.2e-206 720.7 532 62.2
Lj2g0014656 Lotus japonicus HOM05D006175 ORTHO05D008081 1.1e-205 720.3 536 63.2
Sed0010232 Sechium edule HOM05D006175 ORTHO05D008081 5.3e-205 718.0 525 64.4
Solyc03g098250.4 Solanum lycopersicum HOM05D006175 ORTHO05D008081 1.2e-204 716.8 531 64.8
Oeu019145.1 Olea europaea HOM05D006175 ORTHO05D008081 4.5e-204 714.9 540 62.6
Phvul.004G144700 Phaseolus vulgaris HOM05D006175 ORTHO05D008081 1.3e-203 713.4 533 64.7
DCAR_023267 Daucus carota HOM05D006175 ORTHO05D008081 1.7e-203 713.0 572 60.3
ClCG04G012690 Citrullus lanatus HOM05D006175 ORTHO05D008081 5.0e-203 711.4 530 63.4
Glyma.16G218700 Glycine max HOM05D006175 ORTHO05D008081 1.1e-202 710.3 531 63.7
CsaV3_1G032270 Cucumis sativus L. HOM05D006175 ORTHO05D008081 1.9e-202 709.5 526 64.1
Aqoxy2G03817 Aquilegia oxysepala HOM05D006175 ORTHO05D008081 3.2e-202 708.8 533 64.0
Sopen03g028960 Solanum pennellii HOM05D006175 ORTHO05D008081 4.2e-202 708.4 531 64.6
arahy.Tifrunner.gnm1.ann1.R57YID Arachis hypogaea HOM05D006175 ORTHO05D008081 9.4e-202 707.2 543 63.2
VMungo0464G1920 Vigna mungo HOM05D006175 ORTHO05D008081 9.4e-202 707.2 538 62.3
Migut.O00238 Erythranthe guttata HOM05D006175 ORTHO05D008081 6.1e-201 704.5 533 62.9
CAN.G637.8 Capsicum annuum HOM05D006175 ORTHO05D008081 1.4e-200 703.4 530 64.3
Sc10g0008900 Simmondsia chinensis HOM05D006175 ORTHO05D008081 1.2e-199 700.3 528 63.6
THA.LOC104810934 Tarenaya hassleriana HOM05D006175 ORTHO05D008081 1.5e-199 699.9 532 62.4
arahy.Tifrunner.gnm1.ann1.SV5NHS Arachis hypogaea HOM05D006175 ORTHO05D008081 2.6e-199 699.1 552 62.1
Sabra12G0027800 Salix brachista HOM05D006175 ORTHO05D008081 1.7e-198 696.4 539 63.1
AT5G22110 Arabidopsis thaliana HOM05D006175 ORTHO05D008081 1.7e-195 686.4 531 63.3
RcHm_v2.0_Chr7g0177621 Rosa chinensis HOM05D006175 ORTHO05D008081 3.8e-195 685.3 545 61.3
AL6G33090 Arabidopsis lyrata HOM05D006175 ORTHO05D008081 5.0e-195 684.9 531 63.1
Thhalv10001961m.g Eutrema salsugineum HOM05D006175 ORTHO05D008081 6.5e-195 684.5 526 62.0
SpUn0288_0010 Schrenkiella parvula HOM05D006175 ORTHO05D008081 1.1e-194 683.7 528 62.1
Aa31LG1G13320 Aethionema arabicum HOM05D006175 ORTHO05D008081 1.9e-194 682.9 531 62.9
Peaxi162Scf00171g00431 Petunia axillaris HOM05D006175 ORTHO05D008081 1.2e-193 680.2 536 62.5
FvH4_5g17980 Fragaria vesca HOM05D006175 ORTHO05D008081 3.6e-193 678.7 528 61.0
Carub.0006s1975 Capsella rubella HOM05D006175 ORTHO05D008081 6.1e-193 677.9 527 63.6
SalBow5G1258 Salvia bowleyana HOM05D006175 ORTHO05D008081 2.3e-192 676.0 543 59.9
SHI32102 Sapria himalayana HOM05D006175 ORTHO05D008081 4.0e-192 675.2 568 57.6
SGA_v2.0_scaffold90G27775 Striga asiatica HOM05D006175 ORTHO05D008081 4.0e-192 675.2 528 61.4
EL10Ac3g05085 Beta vulgaris HOM05D006175 ORTHO05D008081 8.8e-192 674.1 533 61.2
A03p26700 Brassica napus HOM05D006175 ORTHO05D008081 2.0e-191 672.9 526 61.6
BcaC01g04929 Brassica carinata HOM05D006175 ORTHO05D008081 3.4e-191 672.2 526 62.0
C03p31990 Brassica napus HOM05D006175 ORTHO05D008081 4.4e-191 671.8 526 62.0
Prupe.8G055400 Prunus persica HOM05D006175 ORTHO05D008081 4.4e-191 671.8 532 61.8
BolC3t15542H Brassica oleracea HOM05D006175 ORTHO05D008081 5.7e-191 671.4 526 62.0
Dinv02367 Davidia involucrata HOM05D006175 ORTHO05D008081 2.2e-190 669.5 524 61.6
SMO089G0008 Selaginella moellendorffii HOM05D006175 ORTHO05D008081 6.3e-190 667.9 532 59.8
BraA03t11882Z Brassica rapa HOM05D006175 ORTHO05D008081 7.0e-189 664.5 531 61.2
Lsat_1_v5_gn_2_15241 Lactuca sativa HOM05D006175 ORTHO05D008081 4.5e-188 661.8 530 60.4
Medtr6g075170 Medicago truncatula HOM05D006175 ORTHO05D008081 1.1e-186 657.1 537 58.8
BcaB01g03058 Brassica carinata HOM05D006175 ORTHO05D008081 1.2e-185 653.7 526 60.3
Mapoly0003s0120 Marchantia polymorpha HOM05D006175 ORTHO05D008081 1.8e-184 649.8 528 58.1
ECA238G0751 Erigeron canadensis HOM05D006175 ORTHO05D008081 2.3e-184 649.4 523 60.4
TPR.G28014 Trifolium pratense HOM05D006175 ORTHO05D008081 4.0e-184 648.7 554 56.7
Pp3c16_3220 Physcomitrium patens HOM05D006175 ORTHO05D008081 6.8e-184 647.9 528 58.3
Cpa.g.sc103.12 Carica papaya HOM05D006175 ORTHO05D008081 1.5e-183 646.7 525 59.4
Manes.03G098800 Manihot esculenta HOM05D006175 ORTHO05D008081 1.3e-182 643.7 485 62.5
CSS0011699 Camellia sinensis var. sinensis HOM05D006175 ORTHO05D008081 6.4e-182 641.3 540 57.4
Lj5A165T85 Lonicera japonica HOM05D006175 ORTHO05D008081 2.5e-178 629.4 482 62.9
MD06G1235400 Malus domestica HOM05D006175 ORTHO05D008081 3.1e-176 622.5 538 57.8
vmacro03513 Vaccinium macrocarpon HOM05D006175 ORTHO05D008081 7.0e-173 611.3 599 53.3
Nitab4.5_0005973g0040 Nicotiana tabacum HOM05D006175 ORTHO05D008081 3.5e-172 609.0 552 56.7
SMO200G0091 Selaginella moellendorffii HOM05D006175 ORTHO05D008081 1.1e-170 604.0 528 56.1
Ah.04g156800 Amaranthus hybridus HOM05D006175 ORTHO05D008081 1.9e-170 603.2 533 56.1
ATR0598G269 Amborella trichopoda HOM05D006175 ORTHO05D008081 8.9e-168 594.3 538 56.7
COL.COLO4_27108 Corchorus olitorius HOM05D006175 ORTHO05D008081 7.5e-167 591.3 510 57.3
Hund09784 Selenicereus undatus HOM05D006175 ORTHO05D008081 1.5e-162 577.0 532 55.1
Haze_18963 Corylus avellana HOM05D006175 ORTHO05D008081 2.5e-162 576.2 464 61.4
AUR62002056 Chenopodium quinoa HOM05D006175 ORTHO05D008081 6.8e-160 568.2 594 50.8
HPP92_019162 Vanilla planifolia HOM05D006175 ORTHO05D008081 7.8e-156 554.7 524 53.1
AagrBONN_evm.TU.Sc2ySwM_369.495 Anthoceros agrestis HOM05D006175 ORTHO05D008081 2.8e-153 546.2 526 52.5
AUR62028170 Chenopodium quinoa HOM05D006175 ORTHO05D008081 3.8e-150 535.8 532 51.5
Nitab4.5_0001180g0190 Nicotiana tabacum HOM05D006175 ORTHO05D008081 1.9e-149 533.5 541 52.1
vmacro01251 Vaccinium macrocarpon HOM05D006175 ORTHO05D008081 3.4e-143 512.7 634 45.1
Prupe.5G240100 Prunus persica HOM05D006175 ORTHO05D008081 1.7e-139 500.4 554 50.2
Lalb_Chr22g0353691 Lupinus albus HOM05D006175 ORTHO05D008081 1.1e-130 471.1 297 71.4
HanXRQChr05g0129731 Helianthus annuus HOM05D006175 ORTHO05D008081 9.6e-130 468.0 316 67.7
Rhsim06G0000100 Rhododendron simsii HOM05D006175 ORTHO05D008081 9.6e-122 441.4 297 66.0
HanXRQChr11g0338981 Helianthus annuus HOM05D006175 ORTHO05D008081 3.8e-118 429.5 298 67.1
MD14G1242400 Malus domestica HOM05D006175 ORTHO05D008081 7.9e-108 395.2 447 48.5
Psat6g072600 Pisum sativum HOM05D006175 ORTHO05D008081 1.1e-104 384.8 559 41.3
unitig_0.g1094 Utricularia gibba HOM05D006175 ORTHO05D008081 6.5e-102 375.6 564 39.9
FAN18G1603 Fragaria x ananassa HOM05D006175 ORTHO05D008081 1.1e-101 374.8 231 74.0
MCO14G014 Micromonas commoda HOM05D006175 ORTHO05D008081 1.8e-99 367.5 641 33.1
Glyma.09G169100 Glycine max HOM05D006175 ORTHO05D008081 1.7e-89 334.3 300 56.0
Cre10.g424200 Chlamydomonas reinhardtii HOM05D006175 ORTHO05D008081 2.8e-81 307.0 486 35.8
AL4G26880 Arabidopsis lyrata HOM05D006175 ORTHO05D008081 3.1e-80 303.5 371 46.9
PRCOL_00003367 Prasinoderma coloniale HOM05D006175 ORTHO05D008081 3.3e-69 266.9 565 32.2
Lalb_Chr22g0353701 Lupinus albus HOM05D006175 ORTHO05D008081 8.3e-57 225.7 213 51.6
VMungo1215G0683 Vigna mungo HOM05D006175 ORTHO05D008081 4.6e-55 219.9 197 53.3
AUR62043421 Chenopodium quinoa HOM05D006175 ORTHO05D008081 3.3e-53 213.8 170 60.0
HanXRQChr05g0129721 Helianthus annuus HOM05D006175 ORTHO05D008081 2.9e-49 200.7 214 48.1
HanXRQChr11g0338971 Helianthus annuus HOM05D006175 ORTHO05D008081 4.1e-48 196.8 214 47.7
CDE04G1443 Ceratophyllum demersum HOM05D006175 ORTHO05D008081 1.3e-46 191.8 104 79.8
FAN04G2119 Fragaria x ananassa HOM05D006175 ORTHO05D008081 6.6e-46 189.5 211 46.0
FAN13G0892 Fragaria x ananassa HOM05D006175 ORTHO05D008081 1.1e-45 188.7 211 46.0
FAN08G2730 Fragaria x ananassa HOM05D006175 ORTHO05D008081 9.5e-45 185.7 211 45.0
CDE04G2185 Ceratophyllum demersum HOM05D006175 ORTHO05D008081 6.0e-31 139.8 85 71.8
CDE04G3312 Ceratophyllum demersum HOM05D006175 ORTHO05D008081 3.4e-26 124.0 208 36.1
Ca_23674_v3 Cicer arietinum L. HOM05D006175 ORTHO05D008081 2.4e-24 117.9 186 36.6
Thecc.10G092900 Theobroma cacao HOM05D006175 ORTHO05D008952 4.2e-24 117.1 134 41.0
Cfa025039 Carpinus fangiana HOM05D006175 ORTHO05D008081 1.1e-19 102.4 430 24.7
Thecc.04G242900 Theobroma cacao HOM05D006175 ORTHO05D008081 5.1e-14 83.6 48 79.2
CSS0024377 Camellia sinensis var. sinensis HOM05D006175 ORTHO05D043346 1.4e-11 75.5 53 66.0
CDE04G3394 Ceratophyllum demersum HOM05D006175 ORTHO05D008081 1.4e-11 75.5 88 39.8
BcaC05g28616 Brassica carinata HOM05D002760 ORTHO05D001361 4.9e-09 67.0 31 87.1
A07p06810 Brassica napus HOM05D002760 ORTHO05D003169 4.9e-09 67.0 31 87.1
BNapus_Darmor_BZH_scaffold_38p01460 Brassica napus HOM05D002760 ORTHO05D003169 4.9e-09 67.0 31 87.1
BraA03t12607Z Brassica rapa HOM05D002760 ORTHO05D003169 4.9e-09 67.0 31 87.1
C05p47240 Brassica napus HOM05D002760 ORTHO05D003169 1.4e-08 65.5 31 83.9


User provided reference genes

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