Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SEGI_25526 Sequoiadendron giganteum HOM05D004048 ORTHO05D004859 1.8e-91 339.3 181 100.0
Actinidia10075 Actinidia chinensis HOM05D004048 ORTHO05D004859 6.3e-65 251.1 161 73.9
CSS0029554 Camellia sinensis var. sinensis HOM05D004048 ORTHO05D004859 3.1e-64 248.8 161 72.0
Nn1g01686 Nelumbo nucifera HOM05D004048 ORTHO05D004859 3.1e-64 248.8 161 71.4
SEGI_12250 Sequoiadendron giganteum HOM05D004048 ORTHO05D004859 3.1e-64 248.8 161 73.9
CSS0027402 Camellia sinensis var. sinensis HOM05D004048 ORTHO05D004859 1.2e-63 246.9 161 72.0
HanXRQChr17g0562171 Helianthus annuus HOM05D004048 ORTHO05D004859 1.2e-63 246.9 161 73.9
RcHm_v2.0_Chr1g0357691 Rosa chinensis HOM05D004048 ORTHO05D004859 1.6e-63 246.5 161 73.3
TAR375G1056 Trochodendron aralioides HOM05D004048 ORTHO05D004859 2.0e-63 246.1 161 71.4
FAN03G0096 Fragaria x ananassa HOM05D004048 ORTHO05D004859 2.6e-63 245.7 161 73.3
MBI03_g34597_MAGBIO Magnolia biondii HOM05D004048 ORTHO05D004859 4.5e-63 245.0 161 72.7
MD07G1131200 Malus domestica HOM05D004048 ORTHO05D004859 4.5e-63 245.0 161 72.7
FvH4_7g15370 Fragaria vesca HOM05D004048 ORTHO05D004859 5.9e-63 244.6 161 73.3
FAN06G1753 Fragaria x ananassa HOM05D004048 ORTHO05D004859 5.9e-63 244.6 161 73.3
FAN10G1698 Fragaria x ananassa HOM05D004048 ORTHO05D004859 5.9e-63 244.6 161 73.3
FAN10G3606 Fragaria x ananassa HOM05D004048 ORTHO05D004859 5.9e-63 244.6 161 73.3
Lj9C589T5 Lonicera japonica HOM05D004048 ORTHO05D004859 5.9e-63 244.6 161 71.4
Rhsim07G0205800 Rhododendron simsii HOM05D004048 ORTHO05D004859 5.9e-63 244.6 161 70.8
Dinv32522 Davidia involucrata HOM05D004048 ORTHO05D004859 7.7e-63 244.2 161 70.8
RcHm_v2.0_Chr1g0357711 Rosa chinensis HOM05D004048 ORTHO05D004859 1.0e-62 243.8 161 72.0
Prupe.2G177600 Prunus persica HOM05D004048 ORTHO05D004859 1.7e-62 243.0 161 72.0
THA.LOC104817317 Tarenaya hassleriana HOM05D004048 ORTHO05D004859 2.2e-62 242.7 161 69.6
AT2G46110 Arabidopsis thaliana HOM05D004048 ORTHO05D004859 5.0e-62 241.5 161 69.6
vmacro13227 Vaccinium macrocarpon HOM05D004048 ORTHO05D004859 5.0e-62 241.5 161 69.6
GSVIVG01026967001 Vitis vinifera HOM05D004048 ORTHO05D004859 5.0e-62 241.5 161 69.6
Aa31LG10G15450 Aethionema arabicum HOM05D004048 ORTHO05D004859 8.5e-62 240.7 161 70.2
Potri.014G090500 Populus trichocarpa HOM05D004048 ORTHO05D004859 8.5e-62 240.7 161 68.9
CAN.G439.29 Capsicum annuum HOM05D004048 ORTHO05D004859 1.1e-61 240.4 161 69.6
Sp5g01880 Schrenkiella parvula HOM05D004048 ORTHO05D004859 1.1e-61 240.4 161 69.6
TWI23G0617 Tripterygium wilfordii HOM05D004048 ORTHO05D004859 1.5e-61 240.0 161 68.9
BcaB02g07374 Brassica carinata HOM05D004048 ORTHO05D004859 1.9e-61 239.6 160 69.4
BcaC08g45130 Brassica carinata HOM05D004048 ORTHO05D004859 1.9e-61 239.6 160 69.4
Carub.0004s2881 Capsella rubella HOM05D004048 ORTHO05D004859 1.9e-61 239.6 161 68.9
CARHR107270 Cardamine hirsuta HOM05D004048 ORTHO05D004859 1.9e-61 239.6 161 70.2
Duzib268G0835 Durio zibethinus HOM05D004048 ORTHO05D004859 1.9e-61 239.6 161 69.6
Thecc.01G352400 Theobroma cacao HOM05D004048 ORTHO05D004859 1.9e-61 239.6 161 69.6
BolC6t37921H Brassica oleracea HOM05D004048 ORTHO05D004859 2.5e-61 239.2 160 69.4
BraA07t30196Z Brassica rapa HOM05D004048 ORTHO05D004859 2.5e-61 239.2 160 69.4
Hma1.2p1_0335F.1_g128890 Hydrangea macrophylla HOM05D004048 ORTHO05D004859 2.5e-61 239.2 161 68.9
Manes.05G029300 Manihot esculenta HOM05D004048 ORTHO05D004859 2.5e-61 239.2 161 68.9
arahy.Tifrunner.gnm1.ann1.8G3C0P Arachis hypogaea HOM05D004048 ORTHO05D004859 3.2e-61 238.8 161 70.8
A07p25550 Brassica napus HOM05D004048 ORTHO05D004859 3.2e-61 238.8 160 69.4
BraA09t40782Z Brassica rapa HOM05D004048 ORTHO05D004859 3.2e-61 238.8 161 68.9
TPR.G37181 Trifolium pratense HOM05D004048 ORTHO05D004859 3.2e-61 238.8 161 68.3
C06p27540 Brassica napus HOM05D004048 ORTHO05D004859 4.2e-61 238.4 160 69.4
Aqoxy5G04084 Aquilegia oxysepala HOM05D004048 ORTHO05D004859 5.5e-61 238.0 161 68.3
Lj1g0027864 Lotus japonicus HOM05D004048 ORTHO05D004859 5.5e-61 238.0 161 68.3
Lj5g0009706 Lotus japonicus HOM05D004048 ORTHO05D004859 5.5e-61 238.0 161 68.3
Lalb_Chr17g0338041 Lupinus albus HOM05D004048 ORTHO05D004859 5.5e-61 238.0 161 68.9
Sc01g0003210 Simmondsia chinensis HOM05D004048 ORTHO05D004859 5.5e-61 238.0 161 69.6
Solyc09g007130.3 Solanum lycopersicum HOM05D004048 ORTHO05D004859 5.5e-61 238.0 161 68.3
PGSC0003DMG400002011 Solanum tuberosum HOM05D004048 ORTHO05D004859 5.5e-61 238.0 161 68.3
AL4G45340 Arabidopsis lyrata HOM05D004048 ORTHO05D004859 7.2e-61 237.7 161 67.7
arahy.Tifrunner.gnm1.ann1.8BBS1S Arachis hypogaea HOM05D004048 ORTHO05D004859 7.2e-61 237.7 161 68.9
arahy.Tifrunner.gnm1.ann1.9CR96V Arachis hypogaea HOM05D004048 ORTHO05D004859 7.2e-61 237.7 161 68.9
BcaC07g40651 Brassica carinata HOM05D004048 ORTHO05D004859 7.2e-61 237.7 161 68.3
C08p36390 Brassica napus HOM05D004048 ORTHO05D004859 7.2e-61 237.7 161 68.3
BolC8t51222H Brassica oleracea HOM05D004048 ORTHO05D004859 7.2e-61 237.7 161 68.3
CDE11G0110 Ceratophyllum demersum HOM05D004048 ORTHO05D004859 7.2e-61 237.7 160 69.4
Ca_03490_v3 Cicer arietinum L. HOM05D004048 ORTHO05D004859 7.2e-61 237.7 161 68.3
FAN10G1509 Fragaria x ananassa HOM05D004048 ORTHO05D004859 7.2e-61 237.7 161 70.8
Glyma.07G064600 Glycine max HOM05D004048 ORTHO05D004859 7.2e-61 237.7 161 68.9
Nitab4.5_0000615g0020 Nicotiana tabacum HOM05D004048 ORTHO05D004859 7.2e-61 237.7 161 68.9
Nitab4.5_0005222g0030 Nicotiana tabacum HOM05D004048 ORTHO05D004859 7.2e-61 237.7 161 68.9
Peaxi162Scf00217g00711 Petunia axillaris HOM05D004048 ORTHO05D004859 7.2e-61 237.7 161 68.3
Sopen09g002000 Solanum pennellii HOM05D004048 ORTHO05D004859 7.2e-61 237.7 161 68.3
COL.COLO4_12778 Corchorus olitorius HOM05D004048 ORTHO05D004859 9.4e-61 237.3 161 68.9
DCAR_025214 Daucus carota HOM05D004048 ORTHO05D004859 9.4e-61 237.3 161 70.2
Eucgr.B01988 Eucalyptus grandis HOM05D004048 ORTHO05D004859 9.4e-61 237.3 161 68.9
Sabra14G0065600 Salix brachista HOM05D004048 ORTHO05D004859 9.4e-61 237.3 161 67.7
AT3G61530 Arabidopsis thaliana HOM05D004048 ORTHO05D004859 1.2e-60 236.9 160 68.8
A09p53600 Brassica napus HOM05D004048 ORTHO05D004859 1.2e-60 236.9 161 68.9
Medtr8g028555 Medicago truncatula HOM05D004048 ORTHO05D004859 1.2e-60 236.9 161 67.7
BcaC07g42671 Brassica carinata HOM05D004048 ORTHO05D004859 1.6e-60 236.5 161 68.3
Cc02_g21240 Coffea canephora HOM05D004048 ORTHO05D004859 1.6e-60 236.5 161 69.6
Thhalv10001521m.g Eutrema salsugineum HOM05D004048 ORTHO05D004859 1.6e-60 236.5 161 68.3
Hund27241 Selenicereus undatus HOM05D004048 ORTHO05D004859 1.6e-60 236.5 161 68.3
Carub.0005s2822 Capsella rubella HOM05D004048 ORTHO05D004859 2.1e-60 236.1 161 67.7
Lsat_1_v5_gn_4_35260 Lactuca sativa HOM05D004048 ORTHO05D004859 2.1e-60 236.1 161 69.6
HPP92_005267 Vanilla planifolia HOM05D004048 ORTHO05D004859 2.1e-60 236.1 161 68.9
AL5G43890 Arabidopsis lyrata HOM05D004048 ORTHO05D004859 2.7e-60 235.7 161 68.3
EL10Ac1g00354 Beta vulgaris HOM05D004048 ORTHO05D004859 2.7e-60 235.7 161 67.7
VMungo0331G0386 Vigna mungo HOM05D004048 ORTHO05D004859 2.7e-60 235.7 161 68.3
FvH4_7g15371 Fragaria vesca HOM05D004048 ORTHO05D004859 3.6e-60 235.3 161 70.8
PGR004G0897 Punica granatum HOM05D004048 ORTHO05D004859 3.6e-60 235.3 161 68.3
TPR.G28287 Trifolium pratense HOM05D004048 ORTHO05D004859 3.6e-60 235.3 161 66.5
Gohir.D08G154300 Gossypium hirsutum HOM05D004048 ORTHO05D004859 4.7e-60 235.0 161 68.3
Gorai.004G160400 Gossypium raimondii HOM05D004048 ORTHO05D004859 4.7e-60 235.0 161 68.3
Phvul.010G104900 Phaseolus vulgaris HOM05D004048 ORTHO05D004859 4.7e-60 235.0 161 68.9
QL04p055532 Quercus lobata HOM05D004048 ORTHO05D004859 4.7e-60 235.0 161 68.9
FAN10G3616 Fragaria x ananassa HOM05D004048 ORTHO05D004859 6.1e-60 234.6 161 70.2
PSO170G0644 Papaver somniferum HOM05D004048 ORTHO05D004859 6.1e-60 234.6 161 66.5
Sp4g28180 Schrenkiella parvula HOM05D004048 ORTHO05D004859 8.0e-60 234.2 161 67.7
AUR62004413 Chenopodium quinoa HOM05D004048 ORTHO05D004859 1.0e-59 233.8 161 68.3
Medtr4g037305 Medicago truncatula HOM05D004048 ORTHO05D004859 1.0e-59 233.8 161 66.5
Migut.B01799 Erythranthe guttata HOM05D004048 ORTHO05D004859 1.4e-59 233.4 161 68.3
PSO063G1481 Papaver somniferum HOM05D004048 ORTHO05D004859 1.4e-59 233.4 161 65.8
CiPaw.02G034800 Carya illinoinensis HOM05D004048 ORTHO05D004859 2.3e-59 232.6 161 68.3
FAN06G0189 Fragaria x ananassa HOM05D004048 ORTHO05D004859 2.3e-59 232.6 178 65.7
Gohir.D08G043100 Gossypium hirsutum HOM05D004048 ORTHO05D004859 2.3e-59 232.6 161 67.1
Gorai.004G041700 Gossypium raimondii HOM05D004048 ORTHO05D004859 2.3e-59 232.6 161 67.1
Psat4g156920 Pisum sativum HOM05D004048 ORTHO05D004859 2.3e-59 232.6 161 67.1
Gohir.A08G032200 Gossypium hirsutum HOM05D004048 ORTHO05D004859 4.0e-59 231.9 161 66.5
Atru.chr7.1494 Acer truncatum HOM05D004048 ORTHO05D004859 8.8e-59 230.7 161 66.5
Ciclev10020577m.g Citrus clementina HOM05D004048 ORTHO05D004859 8.8e-59 230.7 159 67.9
Pp3c7_220 Physcomitrium patens HOM05D004048 ORTHO05D004859 8.8e-59 230.7 161 70.2
Haze_15565 Corylus avellana HOM05D004048 ORTHO05D004859 4.4e-58 228.4 173 64.2
CANSAT56G4107 Cannabis sativa HOM05D004048 ORTHO05D004859 1.7e-57 226.5 161 67.1
Gohir.A08G133000 Gossypium hirsutum HOM05D004048 ORTHO05D004859 2.2e-57 226.1 160 66.9
SGA_v2.0_scaffold4G02279 Striga asiatica HOM05D004048 ORTHO05D004859 2.8e-57 225.7 161 67.1
MELO3C014805.2 Cucumis melo HOM05D004048 ORTHO05D004859 8.3e-57 224.2 161 64.0
CsaV3_7G025860 Cucumis sativus L. HOM05D004048 ORTHO05D004859 1.8e-56 223.0 161 64.0
Mapoly0035s0043 Marchantia polymorpha HOM05D004048 ORTHO05D004859 3.1e-56 222.2 161 66.5
SMO144G0210 Selaginella moellendorffii HOM05D004048 ORTHO05D004859 4.1e-56 221.9 159 66.0
Duzib138G1147 Durio zibethinus HOM05D004048 ORTHO05D004859 1.6e-55 219.9 190 56.8
Glyma.09G254700 Glycine max HOM05D004048 ORTHO05D004859 1.6e-55 219.9 161 65.8
MELO3C012767.2 Cucumis melo HOM05D004048 ORTHO05D004859 2.7e-55 219.2 173 60.1
AagrBONN_evm.TU.Sc2ySwM_117.1042 Anthoceros agrestis HOM05D004048 ORTHO05D004859 1.0e-54 217.2 161 65.8
AagrBONN_evm.TU.Sc2ySwM_117.2358 Anthoceros agrestis HOM05D004048 ORTHO05D004859 1.0e-54 217.2 161 65.8
BcaC07g40671 Brassica carinata HOM05D004048 ORTHO05D004859 1.7e-54 216.5 168 61.9
CBR_g45417 Chara braunii HOM05D004048 ORTHO05D004859 2.9e-54 215.7 155 64.5
AUR62022619 Chenopodium quinoa HOM05D004048 ORTHO05D004859 6.5e-54 214.5 147 68.7
Oeu054354.2 Olea europaea HOM05D004048 ORTHO05D004859 3.2e-53 212.2 208 52.9
Os01g0225500 Oryza sativa ssp. japonica HOM05D004048 ORTHO05D004859 5.5e-53 211.5 161 62.7
Cre12.g508550 Chlamydomonas reinhardtii HOM05D004048 ORTHO05D004859 4.7e-52 208.4 161 59.6
MCO13G154 Micromonas commoda HOM05D004048 ORTHO05D004859 9.8e-50 200.7 161 59.0
Rhsim07G0010400 Rhododendron simsii HOM05D004048 ORTHO05D004859 4.8e-49 198.4 161 60.9
unitig_60.g25627 Utricularia gibba HOM05D004048 ORTHO05D004859 4.1e-48 195.3 163 60.7
Rhsim07G0206900 Rhododendron simsii HOM05D004048 ORTHO05D004859 5.4e-48 194.9 161 59.6
ECA234G0147 Erigeron canadensis HOM05D004048 ORTHO05D004859 1.2e-47 193.7 161 61.5
SMO356G0035 Selaginella moellendorffii HOM05D004048 ORTHO05D004859 5.9e-47 191.4 161 59.6
SMO119G0299 Selaginella moellendorffii HOM05D004048 ORTHO05D004859 1.0e-46 190.7 139 67.6
Ah.05g180160 Amaranthus hybridus HOM05D004048 ORTHO05D004859 1.7e-46 189.9 161 57.8
ClCG09G009090 Citrullus lanatus HOM05D004048 ORTHO05D004859 8.0e-44 181.0 161 54.7
PGSC0003DMG400018716 Solanum tuberosum HOM05D004048 ORTHO05D004859 2.6e-42 176.0 127 63.0
Os01g0225400 Oryza sativa ssp. japonica HOM05D004048 ORTHO05D004859 6.3e-41 171.4 120 65.0
TPR.G28294 Trifolium pratense HOM05D004048 ORTHO05D004859 5.9e-39 164.9 161 54.0
SEGI_21771 Sequoiadendron giganteum HOM05D004048 ORTHO05D004859 4.7e-36 155.2 82 96.3
PRCOL_00005166 Prasinoderma coloniale HOM05D004048 ORTHO05D004859 2.3e-35 152.9 161 49.7
Cpa.g.sc11.73 Carica papaya HOM05D004048 ORTHO05D004859 6.4e-33 144.8 174 47.7
FAN06G1997 Fragaria x ananassa HOM05D004048 ORTHO05D004859 5.4e-32 141.7 161 47.8
Eucgr.B01984 Eucalyptus grandis HOM05D004048 ORTHO05D004859 7.0e-32 141.4 189 44.4
FAN06G4041 Fragaria x ananassa HOM05D004048 ORTHO05D004859 3.3e-29 132.5 132 53.8
Eucgr.B01986 Eucalyptus grandis HOM05D004048 ORTHO05D004859 2.1e-28 129.8 190 42.1
Zm00001eb339000 Zea mays HOM05D004048 ORTHO05D004859 2.8e-28 129.4 82 76.8
ATR0751G082 Amborella trichopoda HOM05D004048 ORTHO05D004859 6.2e-28 128.3 84 75.0
ATR0751G137 Amborella trichopoda HOM05D004048 ORTHO05D004859 6.2e-28 128.3 79 77.2
Cfa001640 Carpinus fangiana HOM05D004048 ORTHO05D004859 5.2e-27 125.2 146 47.3
Cfa003872 Carpinus fangiana HOM05D004048 ORTHO05D004859 4.9e-25 118.6 84 60.7
FAN01G2460 Fragaria x ananassa HOM05D004048 ORTHO05D004859 3.2e-24 115.9 84 61.9
Lj6g0001313 Lotus japonicus HOM05D004048 ORTHO05D004859 3.2e-24 115.9 87 55.2
Medtr4g037315 Medicago truncatula HOM05D004048 ORTHO05D004859 6.0e-23 111.7 84 56.0
Nn6g32447 Nelumbo nucifera HOM05D004048 ORTHO05D004859 4.3e-21 105.5 161 38.5
Haze_27487 Corylus avellana HOM05D004048 ORTHO05D004859 1.5e-18 97.1 132 37.9
ATR0751G274 Amborella trichopoda HOM05D004048 ORTHO05D004859 3.4e-18 95.9 73 53.4
arahy.Tifrunner.gnm1.ann1.63JPLQ Arachis hypogaea HOM05D004048 ORTHO05D004859 2.9e-17 92.8 74 52.7
Ca_03489_v3 Cicer arietinum L. HOM05D004048 ORTHO05D004859 3.7e-17 92.4 79 62.0
Haze_26957 Corylus avellana HOM05D005470 ORTHO05D006855 5.4e-16 88.6 86 47.7
Medtr4g037245 Medicago truncatula HOM05D004048 ORTHO05D004859 6.6e-14 81.6 87 50.6
DCAR_025216 Daucus carota HOM05D003118 ORTHO05D003618 4.7e-12 75.5 78 57.7
arahy.Tifrunner.gnm1.ann1.DMYH1R Arachis hypogaea HOM05D004048 ORTHO05D004859 1.5e-10 70.5 65 46.2
Potri.002G164601 Populus trichocarpa HOM05D004048 ORTHO05D004859 1.1e-08 64.3 65 40.0
Actinidia20163 Actinidia chinensis HOM05D004048 ORTHO05D004859 1.2e-07 60.8 95 45.3
SGA_v2.0_scaffold4G02383 Striga asiatica HOM05D004048 ORTHO05D051375 1.3e-06 57.4 29 93.1


User provided reference genes

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