Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SEGI_25079 Sequoiadendron giganteum HOM05D004718 ORTHO05D015872 1.2e-83 313.2 155 100.0
SEGI_02124 Sequoiadendron giganteum HOM05D002510 ORTHO05D015872 2.4e-36 156.0 87 85.1
SEGI_26410 Sequoiadendron giganteum HOM05D001045 ORTHO05D015872 5.3e-36 154.8 134 61.2
SEGI_40136 Sequoiadendron giganteum HOM05D005983 ORTHO05D007438 6.9e-36 154.5 94 78.7
SEGI_18048 Sequoiadendron giganteum HOM05D001653 ORTHO05D001751 9.0e-36 154.1 76 93.4
SEGI_00274 Sequoiadendron giganteum HOM05D001503 ORTHO05D003820 1.3e-34 150.2 77 90.9
SEGI_32415 Sequoiadendron giganteum HOM05D002760 ORTHO05D003169 1.2e-32 143.7 76 89.5
SEGI_14136 Sequoiadendron giganteum HOM05D001457 ORTHO05D001477 2.7e-32 142.5 77 85.7
SEGI_20326 Sequoiadendron giganteum HOM05D000288 ORTHO05D000173 4.3e-30 135.2 76 82.9
SEGI_17956 Sequoiadendron giganteum HOM05D000225 ORTHO05D015872 2.4e-28 129.4 78 79.5
SEGI_14901 Sequoiadendron giganteum HOM05D001392 ORTHO05D006407 4.9e-26 121.7 71 78.9
SEGI_25582 Sequoiadendron giganteum HOM05D005623 ORTHO05D007130 1.1e-22 110.5 57 89.5
FvH4_2g30650 Fragaria vesca HOM05D004718 ORTHO05D005838 1.5e-22 110.2 79 68.4
Prupe.1G462800 Prunus persica HOM05D004718 ORTHO05D005838 1.9e-22 109.8 118 50.0
MD15G1110500 Malus domestica HOM05D004718 ORTHO05D005838 2.5e-22 109.4 118 50.0
MD08G1133600 Malus domestica HOM05D004718 ORTHO05D005838 3.3e-22 109.0 118 50.0
RcHm_v2.0_Chr6g0312261 Rosa chinensis HOM05D004718 ORTHO05D005838 3.3e-22 109.0 79 67.1
Dinv09445 Davidia involucrata HOM05D004718 ORTHO05D005838 4.3e-22 108.6 78 65.4
HPP92_023163 Vanilla planifolia HOM05D004718 ORTHO05D005838 4.3e-22 108.6 136 47.1
Aqoxy7G00911 Aquilegia oxysepala HOM05D004718 ORTHO05D005838 7.4e-22 107.8 79 65.8
Hma1.2p1_0147F.1_g065850 Hydrangea macrophylla HOM05D004718 ORTHO05D005838 7.4e-22 107.8 78 64.1
Cc07_g17410 Coffea canephora HOM05D004718 ORTHO05D005838 9.6e-22 107.5 116 48.3
Zm00001eb008340 Zea mays HOM05D004718 ORTHO05D005838 9.6e-22 107.5 77 64.9
Zm00001eb310400 Zea mays HOM05D004718 ORTHO05D005838 1.3e-21 107.1 77 64.9
SEGI_06039 Sequoiadendron giganteum HOM05D003097 ORTHO05D003437 1.6e-21 106.7 50 96.0
Actinidia03322 Actinidia chinensis HOM05D004718 ORTHO05D005838 2.1e-21 106.3 79 64.6
ATR0006G074 Amborella trichopoda HOM05D004718 ORTHO05D005838 2.8e-21 105.9 72 68.1
CSS0012298 Camellia sinensis var. sinensis HOM05D004718 ORTHO05D005838 3.7e-21 105.5 79 64.6
CSS0022336 Camellia sinensis var. sinensis HOM05D004718 ORTHO05D005838 3.7e-21 105.5 79 64.6
CDE06G1884 Ceratophyllum demersum HOM05D004718 ORTHO05D005838 3.7e-21 105.5 126 48.4
Gohir.A13G181900 Gossypium hirsutum HOM05D004718 ORTHO05D005838 3.7e-21 105.5 79 63.3
Gohir.D13G185401 Gossypium hirsutum HOM05D004718 ORTHO05D005838 3.7e-21 105.5 79 63.3
Gorai.013G211400 Gossypium raimondii HOM05D004718 ORTHO05D005838 3.7e-21 105.5 79 63.3
CDE04G3074 Ceratophyllum demersum HOM05D004718 ORTHO05D005838 4.8e-21 105.1 76 67.1
Rhsim04G0220700 Rhododendron simsii HOM05D004718 ORTHO05D005838 4.8e-21 105.1 79 63.3
Thecc.09G001900 Theobroma cacao HOM05D004718 ORTHO05D005838 4.8e-21 105.1 79 62.0
Ciclev10007306m.g Citrus clementina HOM05D004718 ORTHO05D005838 6.2e-21 104.8 79 64.6
Duzib168G2024 Durio zibethinus HOM05D004718 ORTHO05D005838 1.1e-20 104.0 79 62.0
TAR624G0199 Trochodendron aralioides HOM05D004718 ORTHO05D005838 1.1e-20 104.0 77 66.2
Lj7A755G38 Lonicera japonica HOM05D004718 ORTHO05D005838 1.8e-20 103.2 73 67.1
GSVIVG01035602001 Vitis vinifera HOM05D004718 ORTHO05D005838 1.8e-20 103.2 79 62.0
COL.COLO4_18636 Corchorus olitorius HOM05D004718 ORTHO05D005838 3.1e-20 102.4 79 62.0
Sc06g0001390 Simmondsia chinensis HOM05D004718 ORTHO05D005838 3.1e-20 102.4 79 64.6
Atru.chr12.843 Acer truncatum HOM05D004718 ORTHO05D005838 5.3e-20 101.7 79 62.0
DCAR_000697 Daucus carota HOM05D004718 ORTHO05D005838 5.3e-20 101.7 118 48.3
Manes.18G079200 Manihot esculenta HOM05D004718 ORTHO05D005838 5.3e-20 101.7 73 65.8
Cpa.g.sc42.62 Carica papaya HOM05D004718 ORTHO05D005838 9.0e-20 100.9 79 60.8
Nn8g40158 Nelumbo nucifera HOM05D004718 ORTHO05D005838 1.2e-19 100.5 79 64.6
Solyc03g078390.3 Solanum lycopersicum HOM05D004718 ORTHO05D005838 1.2e-19 100.5 78 59.0
Sopen03g021200 Solanum pennellii HOM05D004718 ORTHO05D005838 1.2e-19 100.5 78 59.0
PGSC0003DMG402018450 Solanum tuberosum HOM05D004718 ORTHO05D005838 1.5e-19 100.1 78 60.3
QL12p024639 Quercus lobata HOM05D004718 ORTHO05D005838 2.0e-19 99.8 78 60.3
Sabra02G0063900 Salix brachista HOM05D004718 ORTHO05D005838 2.0e-19 99.8 101 51.5
THA.LOC104799000 Tarenaya hassleriana HOM05D004718 ORTHO05D005838 2.0e-19 99.8 76 61.8
AUR62028027 Chenopodium quinoa HOM05D004718 ORTHO05D005838 2.6e-19 99.4 119 47.9
A06p28290 Brassica napus HOM05D004718 ORTHO05D005838 5.8e-19 98.2 87 51.7
BraA06t25772Z Brassica rapa HOM05D004718 ORTHO05D005838 5.8e-19 98.2 87 51.7
CAN.G30.25 Capsicum annuum HOM05D004718 ORTHO05D005838 5.8e-19 98.2 78 59.0
MBI07_g41265_MAGBIO Magnolia biondii HOM05D004718 ORTHO05D005838 5.8e-19 98.2 77 66.2
EL10Ac2g03649 Beta vulgaris HOM05D004718 ORTHO05D005838 7.6e-19 97.8 118 49.2
HanXRQChr03g0082331 Helianthus annuus HOM05D004718 ORTHO05D005838 7.6e-19 97.8 78 61.5
Ah.11g044230 Amaranthus hybridus HOM05D004718 ORTHO05D005838 1.0e-18 97.4 121 46.3
AL5G29440 Arabidopsis lyrata HOM05D004718 ORTHO05D005838 1.3e-18 97.1 87 52.9
CiPaw.07G215000 Carya illinoinensis HOM05D004718 ORTHO05D005838 1.3e-18 97.1 79 59.5
AUR62020697 Chenopodium quinoa HOM05D004718 ORTHO05D005838 1.3e-18 97.1 119 47.1
Potri.005G179500 Populus trichocarpa HOM05D004718 ORTHO05D005838 1.3e-18 97.1 79 58.2
SEGI_15585 Sequoiadendron giganteum HOM05D001613 ORTHO05D001556 1.3e-18 97.1 49 89.8
SEGI_01713 Sequoiadendron giganteum HOM05D002535 ORTHO05D006846 1.7e-18 96.7 130 44.6
CANSAT25G2838 Cannabis sativa HOM05D004718 ORTHO05D005838 2.2e-18 96.3 79 60.8
ECA240G2491 Erigeron canadensis HOM05D004718 ORTHO05D005838 2.2e-18 96.3 78 59.0
Sed0007031 Sechium edule HOM05D004718 ORTHO05D005838 2.2e-18 96.3 79 59.5
TWI32G0049 Tripterygium wilfordii HOM05D004718 ORTHO05D005838 2.2e-18 96.3 79 57.0
AT3G49600 Arabidopsis thaliana HOM05D004718 ORTHO05D005838 2.9e-18 95.9 87 52.9
Thhalv10010085m.g Eutrema salsugineum HOM05D004718 ORTHO05D005838 2.9e-18 95.9 87 51.7
BcaC01g02421 Brassica carinata HOM05D004718 ORTHO05D005838 3.8e-18 95.5 87 50.6
BcaC07g39424 Brassica carinata HOM05D004718 ORTHO05D005838 3.8e-18 95.5 84 54.8
A06p18130 Brassica napus HOM05D004718 ORTHO05D005838 3.8e-18 95.5 84 54.8
C03p65460 Brassica napus HOM05D004718 ORTHO05D005838 3.8e-18 95.5 87 50.6
C08p24600 Brassica napus HOM05D004718 ORTHO05D005838 3.8e-18 95.5 84 54.8
BraA06t24901Z Brassica rapa HOM05D004718 ORTHO05D005838 3.8e-18 95.5 84 54.8
Oeu047653.1 Olea europaea HOM05D004718 ORTHO05D005838 3.8e-18 95.5 78 57.7
Peaxi162Scf00583g00537 Petunia axillaris HOM05D004718 ORTHO05D005838 3.8e-18 95.5 76 55.3
BcaB01g00691 Brassica carinata HOM05D004718 ORTHO05D005838 6.5e-18 94.7 84 54.8
CARHR158610 Cardamine hirsuta HOM05D004718 ORTHO05D005838 6.5e-18 94.7 87 51.7
Carub.0005s1593 Capsella rubella HOM05D004718 ORTHO05D005838 1.1e-17 94.0 87 51.7
ClCG08G012790 Citrullus lanatus HOM05D004718 ORTHO05D005838 1.4e-17 93.6 79 58.2
MELO3C011203.2 Cucumis melo HOM05D004718 ORTHO05D005838 1.9e-17 93.2 79 58.2
CsaV3_2G031540 Cucumis sativus L. HOM05D004718 ORTHO05D005838 1.9e-17 93.2 79 58.2
Potri.002G081600 Populus trichocarpa HOM05D004718 ORTHO05D005838 1.9e-17 93.2 79 57.0
Migut.H01115 Erythranthe guttata HOM05D004718 ORTHO05D005838 2.5e-17 92.8 76 57.9
MSTRG.2684 Avicennia marina HOM05D004718 ORTHO05D005838 3.2e-17 92.4 78 55.1
BcaB02g09597 Brassica carinata HOM05D004718 ORTHO05D005838 3.2e-17 92.4 87 49.4
PSO017G4020 Papaver somniferum HOM05D004718 ORTHO05D005838 3.2e-17 92.4 71 63.4
PGR142G1098 Punica granatum HOM05D004718 ORTHO05D005838 3.2e-17 92.4 79 54.4
Glyma.14G132500 Glycine max HOM05D004718 ORTHO05D005838 4.2e-17 92.0 81 59.3
Glyma.17G201000 Glycine max HOM05D004718 ORTHO05D005838 4.2e-17 92.0 81 59.3
Sp5g12510 Schrenkiella parvula HOM05D004718 ORTHO05D005838 4.2e-17 92.0 84 56.0
unitig_699.g19716 Utricularia gibba HOM05D004718 ORTHO05D005838 4.2e-17 92.0 78 57.7
BolC8t50076H Brassica oleracea HOM05D004718 ORTHO05D005838 7.1e-17 91.3 84 52.4
Sed0011780 Sechium edule HOM05D004718 ORTHO05D005838 9.3e-17 90.9 79 57.0
Mapoly0015s0043 Marchantia polymorpha HOM05D004718 ORTHO05D005838 1.2e-16 90.5 117 44.4
PSO063G2513 Papaver somniferum HOM05D004718 ORTHO05D005838 1.2e-16 90.5 71 62.0
PSO421G0298 Papaver somniferum HOM05D004718 ORTHO05D005838 1.2e-16 90.5 76 55.3
Actinidia25724 Actinidia chinensis HOM05D004718 ORTHO05D005838 1.6e-16 90.1 73 57.5
Lalb_Chr14g0362131 Lupinus albus HOM05D004718 ORTHO05D005838 2.1e-16 89.7 81 55.6
Lj5g0017014 Lotus japonicus HOM05D004718 ORTHO05D005838 2.7e-16 89.4 81 55.6
arahy.Tifrunner.gnm1.ann1.7TNR6F Arachis hypogaea HOM05D004718 ORTHO05D005838 3.5e-16 89.0 81 55.6
arahy.Tifrunner.gnm1.ann1.N8XBBJ Arachis hypogaea HOM05D004718 ORTHO05D005838 3.5e-16 89.0 81 55.6
Ca_15681_v3 Cicer arietinum L. HOM05D004718 ORTHO05D005838 7.9e-16 87.8 81 56.8
Lalb_Chr08g0243651 Lupinus albus HOM05D004718 ORTHO05D005838 7.9e-16 87.8 81 54.3
Pp3c16_5610 Physcomitrium patens HOM05D004718 ORTHO05D005838 7.9e-16 87.8 120 46.7
SEGI_29170 Sequoiadendron giganteum HOM05D000200 ORTHO05D000262 7.9e-16 87.8 67 62.7
Glyma.06G075500 Glycine max HOM05D004718 ORTHO05D005838 1.0e-15 87.4 79 55.7
Glyma.04G074300 Glycine max HOM05D004718 ORTHO05D005838 1.3e-15 87.0 79 55.7
Phvul.009G100000 Phaseolus vulgaris HOM05D004718 ORTHO05D005838 1.3e-15 87.0 81 55.6
TPR.G12432 Trifolium pratense HOM05D004718 ORTHO05D005838 1.3e-15 87.0 81 56.8
Psat5g025880 Pisum sativum HOM05D004718 ORTHO05D005838 3.0e-15 85.9 81 54.3
Ca_12884_v3 Cicer arietinum L. HOM05D004718 ORTHO05D005838 8.7e-15 84.3 81 54.3
Medtr3g108660 Medicago truncatula HOM05D004718 ORTHO05D005838 1.5e-14 83.6 81 54.3
Medtr1g010040 Medicago truncatula HOM05D004718 ORTHO05D005838 1.9e-14 83.2 81 53.1
SEGI_12684 Sequoiadendron giganteum HOM05D001549 ORTHO05D003098 2.5e-14 82.8 56 66.1
VMungo0647G1764 Vigna mungo HOM05D004718 ORTHO05D005838 2.5e-14 82.8 81 54.3
SEGI_29223 Sequoiadendron giganteum HOM05D006557 ORTHO05D008177 1.6e-13 80.1 63 63.5
SGA_v2.0_scaffold76G25169 Striga asiatica HOM05D004718 ORTHO05D005838 3.7e-13 79.0 101 42.6
VMungo1309G0968 Vigna mungo HOM05D004718 ORTHO05D005838 3.7e-13 79.0 81 54.3
FAN27G1892 Fragaria x ananassa HOM05D004718 ORTHO05D005838 4.8e-13 78.6 73 57.5
Nitab4.5_0000964g0050 Nicotiana tabacum HOM05D004718 ORTHO05D005838 4.8e-13 78.6 71 52.1
Phvul.001G057700 Phaseolus vulgaris HOM05D004718 ORTHO05D005838 4.8e-13 78.6 81 50.6
FAN20G1074 Fragaria x ananassa HOM05D003231 ORTHO05D005838 1.1e-12 77.4 52 71.2
Nitab4.5_0000004g0240 Nicotiana tabacum HOM05D004718 ORTHO05D005838 1.4e-12 77.0 62 58.1
Psat6g031760 Pisum sativum HOM05D004718 ORTHO05D005838 1.4e-12 77.0 79 50.6
Lsat_1_v5_gn_5_59280 Lactuca sativa HOM05D004718 ORTHO05D005838 1.2e-11 73.9 67 61.2
Aa31LG4G18090 Aethionema arabicum HOM05D004718 ORTHO05D005838 2.0e-11 73.2 58 60.3
vmacro12746 Vaccinium macrocarpon HOM05D004718 ORTHO05D005838 3.8e-10 68.9 47 63.8
Eucgr.E04340 Eucalyptus grandis HOM05D004718 ORTHO05D005838 6.5e-10 68.2 48 60.4
TPR.G1019 Trifolium pratense HOM05D004718 ORTHO05D005838 6.5e-10 68.2 83 49.4
CBR_g19585 Chara braunii HOM05D004718 ORTHO05D005838 8.5e-10 67.8 85 47.1
SEGI_11405 Sequoiadendron giganteum HOM05D000324 ORTHO05D018220 2.5e-09 66.2 44 68.2
Haze_21689 Corylus avellana HOM05D004718 ORTHO05D005838 3.2e-09 65.9 47 63.8
PSO782G5635 Papaver somniferum HOM05D004718 ORTHO05D005838 9.4e-09 64.3 73 46.6
SEGI_36337 Sequoiadendron giganteum HOM05D000023 ORTHO05D000014 6.1e-08 61.6 58 55.2
SEGI_06353 Sequoiadendron giganteum HOM05D016499 ORTHO05D015872 1.8e-07 60.1 42 64.3
SMO367G0705 Selaginella moellendorffii HOM05D004718 ORTHO05D005838 3.0e-07 59.3 90 41.1
TPR.G36582 Trifolium pratense HOM05D004718 ORTHO05D005838 5.1e-07 58.5 78 43.6


User provided reference genes

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