Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SEGI_24760 Sequoiadendron giganteum HOM05D004333 ORTHO05D005363 0.0e+00 2530.0 1299 100.0
ATR0697G293 Amborella trichopoda HOM05D004333 ORTHO05D005363 3.4e-261 906.0 1490 38.1
MBI06_g06689_MAGBIO Magnolia biondii HOM05D004333 ORTHO05D005363 4.6e-258 895.6 1460 38.4
arahy.Tifrunner.gnm1.ann1.F5KWPZ Arachis hypogaea HOM05D004333 ORTHO05D005363 4.3e-248 862.4 1479 37.5
Cfa016195 Carpinus fangiana HOM05D004333 ORTHO05D005363 2.1e-247 860.1 1489 37.2
TAR633G0098 Trochodendron aralioides HOM05D004333 ORTHO05D005363 2.8e-247 859.8 1491 37.2
Nn7g38041 Nelumbo nucifera HOM05D004333 ORTHO05D005363 1.4e-246 857.4 1498 36.9
arahy.Tifrunner.gnm1.ann1.SMAV3X Arachis hypogaea HOM05D004333 ORTHO05D005363 4.0e-246 855.9 1479 37.5
Lalb_Chr08g0240011 Lupinus albus HOM05D004333 ORTHO05D005363 4.0e-246 855.9 1489 37.3
Potri.015G008500 Populus trichocarpa HOM05D004333 ORTHO05D005363 5.8e-245 852.0 1499 36.2
Haze_00260 Corylus avellana HOM05D004333 ORTHO05D005363 2.9e-244 849.7 1492 36.9
Glyma.04G232700 Glycine max HOM05D004333 ORTHO05D005363 3.8e-244 849.4 1486 36.8
Potri.012G020000 Populus trichocarpa HOM05D004333 ORTHO05D005363 1.1e-243 847.8 1491 36.2
Sabra15G0006500 Salix brachista HOM05D004333 ORTHO05D005363 3.2e-243 846.3 1494 36.5
TWI39G1232 Tripterygium wilfordii HOM05D004333 ORTHO05D005363 5.4e-243 845.5 1483 36.4
Medtr3g091940 Medicago truncatula HOM05D004333 ORTHO05D005363 2.1e-242 843.6 1481 36.3
Manes.01G037200 Manihot esculenta HOM05D004333 ORTHO05D005363 3.9e-241 839.3 1485 37.0
Ca_16734_v3 Cicer arietinum L. HOM05D004333 ORTHO05D005363 1.5e-240 837.4 1496 35.8
Sabra12G0012900 Salix brachista HOM05D004333 ORTHO05D005363 3.3e-240 836.3 1502 35.6
CiPaw.05G200800 Carya illinoinensis HOM05D004333 ORTHO05D005363 7.3e-240 835.1 1492 36.5
TPR.G33633 Trifolium pratense HOM05D004333 ORTHO05D005363 2.8e-239 833.2 1497 36.7
Dinv32109 Davidia involucrata HOM05D004333 ORTHO05D005363 1.4e-238 830.9 1496 35.8
QL11p010725 Quercus lobata HOM05D004333 ORTHO05D005363 5.3e-238 828.9 1487 36.4
vmacro06413 Vaccinium macrocarpon HOM05D004333 ORTHO05D005363 1.2e-237 827.8 1498 36.0
COL.COLO4_16822 Corchorus olitorius HOM05D004333 ORTHO05D005363 3.4e-237 826.2 1488 36.3
Glyma.06G132300 Glycine max HOM05D004333 ORTHO05D005363 4.4e-237 825.9 1488 35.9
VMungo1309G3147 Vigna mungo HOM05D004333 ORTHO05D005363 5.8e-237 825.5 1491 35.7
Phvul.009G048100 Phaseolus vulgaris HOM05D004333 ORTHO05D005363 4.9e-236 822.4 1501 36.1
Aqoxy5G04259 Aquilegia oxysepala HOM05D004333 ORTHO05D005363 1.1e-235 821.2 1496 36.5
Prupe.2G315300 Prunus persica HOM05D004333 ORTHO05D005363 1.9e-235 820.5 1493 36.0
Gohir.D12G248500 Gossypium hirsutum HOM05D004333 ORTHO05D005363 1.2e-234 817.8 1490 36.1
CSS0015753 Camellia sinensis var. sinensis HOM05D004333 ORTHO05D005363 2.7e-234 816.6 1492 35.9
FvH4_7g32380 Fragaria vesca HOM05D004333 ORTHO05D005363 3.5e-234 816.2 1494 35.4
MD07G1295800 Malus domestica HOM05D004333 ORTHO05D005363 4.6e-234 815.8 1486 35.9
Nitab4.5_0010367g0010 Nicotiana tabacum HOM05D004333 ORTHO05D005363 4.6e-234 815.8 1494 35.8
CSS0025528 Camellia sinensis var. sinensis HOM05D004333 ORTHO05D005363 7.9e-234 815.1 1492 35.8
Gohir.A12G247800 Gossypium hirsutum HOM05D004333 ORTHO05D005363 1.0e-233 814.7 1492 36.2
FAN06G4186 Fragaria x ananassa HOM05D004333 ORTHO05D005363 1.3e-233 814.3 1490 35.4
Gorai.008G266500 Gossypium raimondii HOM05D004333 ORTHO05D005363 3.0e-233 813.1 1487 36.2
DCAR_020346 Daucus carota HOM05D004333 ORTHO05D005363 3.9e-233 812.8 1496 35.8
Lj1g0003347 Lotus japonicus HOM05D004333 ORTHO05D005363 1.9e-232 810.4 1488 35.2
Actinidia08674 Actinidia chinensis HOM05D004333 ORTHO05D005363 2.5e-232 810.1 1485 35.2
Ciclev10000006m.g Citrus clementina HOM05D004333 ORTHO05D005363 2.5e-232 810.1 1486 35.8
FAN10G1078 Fragaria x ananassa HOM05D004333 ORTHO05D005363 3.3e-232 809.7 1496 35.0
Lj1C1024G7 Lonicera japonica HOM05D004333 ORTHO05D005363 3.3e-232 809.7 1495 35.3
FAN03G1314 Fragaria x ananassa HOM05D004333 ORTHO05D005363 7.3e-232 808.5 1496 35.4
FAN10G0319 Fragaria x ananassa HOM05D004333 ORTHO05D005363 2.1e-231 807.0 1490 35.0
GSVIVG01038603001 Vitis vinifera HOM05D004333 ORTHO05D005363 3.6e-231 806.2 1309 38.0
RcHm_v2.0_Chr1g0381961 Rosa chinensis HOM05D004333 ORTHO05D005363 1.4e-230 804.3 1490 34.7
MSTRG.27005 Avicennia marina HOM05D004333 ORTHO05D005363 1.8e-230 803.9 1487 35.3
PSO063G3257 Papaver somniferum HOM05D004333 ORTHO05D005363 3.1e-230 803.1 1502 35.7
Nitab4.5_0008197g0020 Nicotiana tabacum HOM05D004333 ORTHO05D005363 5.3e-230 802.4 1489 35.1
Thecc.03G204400 Theobroma cacao HOM05D004333 ORTHO05D005363 5.3e-230 802.4 1495 35.3
Rhsim03G0212200 Rhododendron simsii HOM05D004333 ORTHO05D005363 4.5e-229 799.3 1478 35.5
PGR142G3828 Punica granatum HOM05D004333 ORTHO05D005363 7.6e-229 798.5 1495 35.2
Migut.F00177 Erythranthe guttata HOM05D004333 ORTHO05D005363 1.4e-227 794.3 1503 34.2
Hund21026 Selenicereus undatus HOM05D004333 ORTHO05D005363 2.4e-227 793.5 1482 35.8
Sc19g0000760 Simmondsia chinensis HOM05D004333 ORTHO05D005363 3.2e-227 793.1 1528 35.2
Peaxi162Scf00740g00426 Petunia axillaris HOM05D004333 ORTHO05D005363 2.1e-226 790.4 1497 35.1
AUR62010404 Chenopodium quinoa HOM05D004333 ORTHO05D005363 3.5e-226 789.6 1489 36.3
Solyc03g082680.4 Solanum lycopersicum HOM05D004333 ORTHO05D005363 1.3e-225 787.7 1490 35.6
Sopen03g022440 Solanum pennellii HOM05D004333 ORTHO05D005363 1.3e-225 787.7 1497 35.3
HanXRQChr04g0107121 Helianthus annuus HOM05D004333 ORTHO05D005363 1.8e-225 787.3 1492 34.1
MD01G1225300 Malus domestica HOM05D004333 ORTHO05D005363 1.8e-225 787.3 1499 36.5
Duzib068G0008 Durio zibethinus HOM05D004333 ORTHO05D005363 6.7e-225 785.4 1487 34.9
AUR62016813 Chenopodium quinoa HOM05D004333 ORTHO05D005363 1.5e-224 784.3 1483 35.7
Aa31LG11G3630 Aethionema arabicum HOM05D004333 ORTHO05D005363 1.9e-224 783.9 1472 35.8
SGA_v2.0_scaffold18G08437 Striga asiatica HOM05D004333 ORTHO05D005363 1.9e-224 783.9 1481 35.1
ClCG03G011440 Citrullus lanatus HOM05D004333 ORTHO05D005363 3.7e-223 779.6 1485 36.0
Ah.01g018970 Amaranthus hybridus HOM05D004333 ORTHO05D005363 3.1e-222 776.5 1486 34.5
EL10Ac9g21652 Beta vulgaris HOM05D004333 ORTHO05D005363 3.1e-222 776.5 1483 34.5
CANSAT21G1061 Cannabis sativa HOM05D004333 ORTHO05D005363 1.2e-221 774.6 1489 35.9
Lsat_1_v5_gn_9_49400 Lactuca sativa HOM05D004333 ORTHO05D005363 1.3e-220 771.2 1485 34.0
CDE02G3740 Ceratophyllum demersum HOM05D004333 ORTHO05D005363 8.4e-220 768.5 1432 34.4
Carub.0006s2218 Capsella rubella HOM05D004333 ORTHO05D005363 1.2e-218 764.6 1474 34.6
CsaV3_1G044960 Cucumis sativus L. HOM05D004333 ORTHO05D005363 1.8e-217 760.8 1483 35.0
Cc02_g01170 Coffea canephora HOM05D004333 ORTHO05D005363 2.5e-216 756.9 1486 34.3
AL6G35880 Arabidopsis lyrata HOM05D004333 ORTHO05D005363 8.2e-215 751.9 1479 35.0
CARHR189090 Cardamine hirsuta HOM05D004333 ORTHO05D005363 1.2e-213 748.0 1483 34.1
ECA232G2446 Erigeron canadensis HOM05D004333 ORTHO05D005363 3.4e-213 746.5 1282 35.8
AT5G24350 Arabidopsis thaliana HOM05D004333 ORTHO05D005363 2.9e-212 743.4 1478 34.5
Thhalv10003502m.g Eutrema salsugineum HOM05D004333 ORTHO05D005363 5.0e-212 742.7 1476 34.9
Sed0018682 Sechium edule HOM05D004333 ORTHO05D005363 5.0e-212 742.7 1484 34.1
MELO3C010103.2 Cucumis melo HOM05D004333 ORTHO05D005363 6.5e-212 742.3 1485 34.5
Zm00001eb359130 Zea mays HOM05D004333 ORTHO05D005363 3.2e-211 740.0 1487 33.6
C07p43390 Brassica napus HOM05D004333 ORTHO05D005363 2.5e-208 730.3 1476 34.4
BolC7t44866H Brassica oleracea HOM05D004333 ORTHO05D005363 2.5e-208 730.3 1476 34.4
Cpa.g.c29767.1 Carica papaya HOM05D004333 ORTHO05D005363 2.5e-208 730.3 1420 34.8
THA.LOC104798907 Tarenaya hassleriana HOM05D004333 ORTHO05D005363 2.5e-208 730.3 1477 33.5
Sp2g22970 Schrenkiella parvula HOM05D004333 ORTHO05D005363 2.8e-207 726.9 1477 33.8
A06p35170 Brassica napus HOM05D004333 ORTHO05D005363 3.7e-207 726.5 1477 34.7
FAN01G1860 Fragaria x ananassa HOM05D004333 ORTHO05D005363 3.1e-206 723.4 1254 36.3
BraA06t26437Z Brassica rapa HOM05D004333 ORTHO05D005363 5.3e-206 722.6 1477 34.5
FAN20G1934 Fragaria x ananassa HOM05D004333 ORTHO05D005363 2.9e-204 716.8 1257 36.4
Atru.chr12.2311 Acer truncatum HOM05D004333 ORTHO05D005363 6.1e-202 709.1 1125 39.1
unitig_0.g2452 Utricularia gibba HOM05D004333 ORTHO05D005363 5.5e-195 686.0 1487 32.6
CAN.G481.60 Capsicum annuum HOM05D004333 ORTHO05D005363 6.1e-194 682.6 1415 32.9
BcaNung01227 Brassica carinata HOM05D004333 ORTHO05D005363 2.3e-193 680.6 1435 33.9
Psat5g074840 Pisum sativum HOM05D004333 ORTHO05D005363 2.2e-188 664.1 663 51.1
Mapoly0143s0007 Marchantia polymorpha HOM05D004333 ORTHO05D005363 7.5e-184 649.0 1341 33.5
CAN.G481.57 Capsicum annuum HOM05D004333 ORTHO05D005363 6.5e-180 636.0 1448 31.2
SalBow4G2088 Salvia bowleyana HOM05D004333 ORTHO05D005363 7.8e-157 559.3 576 51.6
Pp3c1_3140 Physcomitrium patens HOM05D004333 ORTHO05D005363 3.6e-146 523.9 1516 28.7
HPP92_002817 Vanilla planifolia HOM05D004333 ORTHO05D005363 1.2e-141 508.8 514 51.0
SHI08278 Sapria himalayana HOM05D004333 ORTHO05D005363 3.0e-132 477.6 1402 29.7
AagrBONN_evm.TU.Sc2ySwM_362.1567 Anthoceros agrestis HOM05D004333 ORTHO05D005363 1.5e-131 475.3 1521 27.4
Gorai.006G202800 Gossypium raimondii HOM05D004333 ORTHO05D005363 6.2e-130 469.9 497 50.3
Gohir.A09G185800 Gossypium hirsutum HOM05D004333 ORTHO05D005363 1.8e-129 468.4 497 50.3
Gohir.D09G180800 Gossypium hirsutum HOM05D004333 ORTHO05D005363 6.9e-129 466.5 497 49.9
CBR_g48777 Chara braunii HOM05D004333 ORTHO05D005363 4.9e-103 380.6 1555 25.0
SMO356G0059 Selaginella moellendorffii HOM05D004333 ORTHO05D005363 1.0e-76 293.1 249 55.8
Psat0s2221g0080 Pisum sativum HOM05D004333 ORTHO05D005363 8.0e-69 266.9 221 63.3
Eucgr.D00250 Eucalyptus grandis HOM05D004333 ORTHO05D005363 1.8e-68 265.8 187 70.6
Psat1g135480 Pisum sativum HOM05D004333 ORTHO05D005363 1.2e-67 263.1 192 67.2
Eucgr.D00251 Eucalyptus grandis HOM05D004333 ORTHO05D005363 4.9e-50 204.5 516 30.0
Os12g0233600 Oryza sativa ssp. japonica HOM05D004333 ORTHO05D005363 4.7e-45 188.0 453 31.1
Psat4g066600 Pisum sativum HOM05D004333 ORTHO05D005363 1.2e-43 183.3 152 60.5
arahy.Tifrunner.gnm1.ann1.7A8JPA Arachis hypogaea HOM05D004333 ORTHO05D005363 1.1e-33 150.2 122 63.9
Psat1g176920 Pisum sativum HOM05D004333 ORTHO05D005363 3.5e-32 145.2 110 66.4
Lj4g0026522 Lotus japonicus HOM05D004333 ORTHO05D005363 6.6e-31 141.0 143 48.3
Nitab4.5_0004178g0050 Nicotiana tabacum HOM05D004333 ORTHO05D005363 6.2e-29 134.4 283 32.2
Actinidia34249 Actinidia chinensis HOM05D004333 ORTHO05D005363 5.2e-28 131.3 348 28.7
Oeu049088.1 Olea europaea HOM05D004333 ORTHO05D005363 4.1e-25 121.7 97 57.7
CAN.G481.56 Capsicum annuum HOM05D004333 ORTHO05D005363 1.9e-22 112.8 78 70.5
CAN.G481.59 Capsicum annuum HOM05D004333 ORTHO05D005363 1.9e-22 112.8 78 70.5
SHI08279 Sapria himalayana HOM05D004333 ORTHO05D005363 5.6e-22 111.3 78 69.2
Psat1g176800 Pisum sativum HOM05D004029 ORTHO05D004613 6.2e-21 107.8 100 54.0
Psat0s3076g0080 Pisum sativum HOM05D004333 ORTHO05D001713 7.6e-19 100.9 65 75.4
Aa31LG11G3970 Aethionema arabicum HOM05D004333 ORTHO05D005363 3.9e-15 88.6 58 72.4
Nitab4.5_0004178g0010 Nicotiana tabacum HOM05D004333 ORTHO05D005363 2.8e-13 82.4 130 33.8
Nitab4.5_0004178g0060 Nicotiana tabacum HOM05D004333 ORTHO05D005363 6.2e-13 81.3 264 27.7
Psat1g100720 Pisum sativum HOM05D004333 ORTHO05D005363 6.9e-12 77.8 138 32.6
Oeu001937.1 Olea europaea HOM05D004333 ORTHO05D005363 1.2e-11 77.0 174 32.8
Cre09.g415400 Chlamydomonas reinhardtii HOM05D004333 ORTHO05D005363 1.9e-06 59.7 107 35.5


User provided reference genes

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