Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SEGI_24649 Sequoiadendron giganteum HOM05D002270 ORTHO05D002866 0.0e+00 1833.9 1037 100.0
SEGI_29020 Sequoiadendron giganteum HOM05D002270 ORTHO05D002866 7.0e-302 1040.8 550 100.0
SEGI_09123 Sequoiadendron giganteum HOM05D002270 ORTHO05D002866 2.5e-259 899.4 493 96.8
SEGI_39597 Sequoiadendron giganteum HOM05D002270 ORTHO05D002866 8.2e-210 734.9 471 96.4
Nn8g38745 Nelumbo nucifera HOM05D002270 ORTHO05D002866 2.0e-147 527.7 986 37.5
ATR0736G011 Amborella trichopoda HOM05D002270 ORTHO05D002866 6.4e-146 522.7 996 37.6
Potri.017G039100 Populus trichocarpa HOM05D002270 ORTHO05D002866 1.6e-144 518.1 946 38.2
Oeu039944.3 Olea europaea HOM05D002270 ORTHO05D002866 3.0e-143 513.8 930 38.1
CiPaw.01G221300 Carya illinoinensis HOM05D002270 ORTHO05D002866 1.5e-142 511.5 947 36.6
GSVIVG01016794001 Vitis vinifera HOM05D002270 ORTHO05D002866 2.5e-142 510.8 1003 37.1
AagrBONN_evm.TU.Sc2ySwM_344.4174 Anthoceros agrestis HOM05D002270 ORTHO05D002866 4.3e-142 510.0 1028 36.8
Gorai.011G062600 Gossypium raimondii HOM05D002270 ORTHO05D002866 9.6e-142 508.8 995 37.8
CSS0023775 Camellia sinensis var. sinensis HOM05D002270 ORTHO05D002866 1.3e-141 508.4 993 37.8
Duzib235G1111 Durio zibethinus HOM05D002270 ORTHO05D002866 6.2e-141 506.1 1000 43.1
Gohir.D10G058500 Gossypium hirsutum HOM05D002270 ORTHO05D002866 8.1e-141 505.8 995 37.7
vmacro22216 Vaccinium macrocarpon HOM05D002270 ORTHO05D002866 5.3e-140 503.1 999 35.6
Actinidia32171 Actinidia chinensis HOM05D002270 ORTHO05D002866 1.5e-139 501.5 997 36.2
Lj5C40G12 Lonicera japonica HOM05D002270 ORTHO05D002866 1.5e-139 501.5 1005 37.3
Sabra17G0026200 Salix brachista HOM05D002270 ORTHO05D002866 3.4e-139 500.4 947 36.5
Prupe.3G044200 Prunus persica HOM05D002270 ORTHO05D002866 5.8e-139 499.6 1008 36.9
Gohir.A10G056600 Gossypium hirsutum HOM05D002270 ORTHO05D002866 2.9e-138 497.3 994 36.2
Mapoly0033s0024 Marchantia polymorpha HOM05D002270 ORTHO05D002866 8.4e-138 495.7 1026 40.7
Rhsim07G0217300 Rhododendron simsii HOM05D002270 ORTHO05D002866 7.1e-137 492.7 998 36.2
Nitab4.5_0000433g0200 Nicotiana tabacum HOM05D002270 ORTHO05D002866 2.1e-136 491.1 1009 37.5
CANSAT56G0650 Cannabis sativa HOM05D002270 ORTHO05D002866 3.5e-136 490.3 1044 35.2
Haze_16005 Corylus avellana HOM05D002270 ORTHO05D002866 3.0e-135 487.3 965 36.9
ClCG09G000860 Citrullus lanatus HOM05D002270 ORTHO05D002866 6.7e-135 486.1 995 35.5
MSTRG.10966 Avicennia marina HOM05D002270 ORTHO05D002866 1.5e-134 485.0 984 36.9
Sopen04g028450 Solanum pennellii HOM05D002270 ORTHO05D002866 1.5e-134 485.0 923 39.2
CsaV3_7G034610 Cucumis sativus L. HOM05D002270 ORTHO05D002866 2.1e-133 481.1 1027 36.2
Thecc.06G117100 Theobroma cacao HOM05D002270 ORTHO05D002866 3.7e-133 480.3 1003 37.4
Manes.04G142500 Manihot esculenta HOM05D002270 ORTHO05D002866 4.8e-133 479.9 937 38.3
MELO3C024369.2 Cucumis melo HOM05D002270 ORTHO05D002866 6.2e-133 479.6 1028 35.8
CAN.G1010.9 Capsicum annuum HOM05D002270 ORTHO05D002866 1.4e-132 478.4 932 37.6
Nitab4.5_0003025g0020 Nicotiana tabacum HOM05D002270 ORTHO05D002866 1.4e-132 478.4 1014 36.7
HanXRQChr09g0276661 Helianthus annuus HOM05D002270 ORTHO05D002866 2.4e-132 477.6 1003 37.0
Sc15g0000370 Simmondsia chinensis HOM05D002270 ORTHO05D002866 4.0e-132 476.9 980 39.8
Cc04_g01520 Coffea canephora HOM05D002270 ORTHO05D002866 5.3e-132 476.5 945 37.0
Aqoxy7G03985 Aquilegia oxysepala HOM05D002270 ORTHO05D002866 2.0e-131 474.6 1006 37.3
arahy.Tifrunner.gnm1.ann1.3D1K9T Arachis hypogaea HOM05D002270 ORTHO05D002866 1.0e-130 472.2 1000 35.6
Glyma.16G004800 Glycine max HOM05D002270 ORTHO05D002866 3.8e-130 470.3 982 34.1
ECA232G3855 Erigeron canadensis HOM05D002270 ORTHO05D002866 1.1e-129 468.8 944 36.5
Glyma.07G035600 Glycine max HOM05D002270 ORTHO05D002866 1.1e-129 468.8 991 36.2
Sed0013702 Sechium edule HOM05D002270 ORTHO05D002866 1.2e-128 465.3 985 38.1
Cfa003549 Carpinus fangiana HOM05D002270 ORTHO05D002866 3.5e-128 463.8 965 35.4
MBI17_g19031_MAGBIO Magnolia biondii HOM05D002270 ORTHO05D002866 6.0e-128 463.0 1005 34.4
RcHm_v2.0_Chr2g0144641 Rosa chinensis HOM05D002270 ORTHO05D002866 1.9e-126 458.0 942 39.6
QL05p009063 Quercus lobata HOM05D002270 ORTHO05D002866 3.3e-126 457.2 1021 36.2
arahy.Tifrunner.gnm1.ann1.B3D1QM Arachis hypogaea HOM05D002270 ORTHO05D002866 9.7e-126 455.7 995 34.7
Dinv37885 Davidia involucrata HOM05D002270 ORTHO05D002866 2.2e-125 454.5 809 40.0
Atru.chr1.3816 Acer truncatum HOM05D002270 ORTHO05D002866 4.8e-125 453.4 966 38.5
Atru.chr1.3813 Acer truncatum HOM05D002270 ORTHO05D002866 8.2e-125 452.6 966 40.1
SalBow6G4013 Salvia bowleyana HOM05D002270 ORTHO05D002866 5.3e-124 449.9 923 37.5
MD05G1009600 Malus domestica HOM05D002270 ORTHO05D002866 1.2e-123 448.7 1010 34.4
Lalb_Chr20g0113911 Lupinus albus HOM05D002270 ORTHO05D002866 1.5e-123 448.4 993 36.3
PGR142G3590 Punica granatum HOM05D002270 ORTHO05D002866 1.5e-123 448.4 927 34.6
Peaxi162Scf00226g00823 Petunia axillaris HOM05D002270 ORTHO05D002866 1.0e-122 445.7 1000 35.5
Hund05750 Selenicereus undatus HOM05D002270 ORTHO05D002866 1.7e-122 444.9 942 36.6
Ciclev10024676m.g Citrus clementina HOM05D002270 ORTHO05D002866 1.9e-121 441.4 980 35.2
FvH4_6g34300 Fragaria vesca HOM05D002270 ORTHO05D002866 7.2e-121 439.5 929 39.6
THA.LOC104805560 Tarenaya hassleriana HOM05D002270 ORTHO05D002866 1.2e-120 438.7 943 35.0
Lj3g0006373 Lotus japonicus HOM05D002270 ORTHO05D002866 2.1e-120 438.0 987 37.8
Solyc04g072260.3 Solanum lycopersicum HOM05D002270 ORTHO05D002866 2.1e-120 438.0 1010 35.9
TWI09G1355 Tripterygium wilfordii HOM05D002270 ORTHO05D002866 2.3e-119 434.5 984 34.1
Migut.H01763 Erythranthe guttata HOM05D002270 ORTHO05D002866 5.1e-119 433.3 924 38.0
Ca_23356_v3 Cicer arietinum L. HOM05D002270 ORTHO05D002866 8.8e-119 432.6 914 34.9
SGA_v2.0_scaffold71G23844 Striga asiatica HOM05D002270 ORTHO05D002866 1.1e-118 432.2 855 39.4
PSO423G0075 Papaver somniferum HOM05D002270 ORTHO05D002866 1.5e-118 431.8 1015 33.4
HPP92_008118 Vanilla planifolia HOM05D002270 ORTHO05D002866 4.8e-117 426.8 980 38.2
FAN14G4121 Fragaria x ananassa HOM05D002270 ORTHO05D002866 1.4e-116 425.2 929 40.5
SEGI_08864 Sequoiadendron giganteum HOM05D002270 ORTHO05D012099 1.4e-116 425.2 215 100.0
Phvul.010G134100 Phaseolus vulgaris HOM05D002270 ORTHO05D002866 3.1e-116 424.1 947 34.8
THA.LOC104807245 Tarenaya hassleriana HOM05D002270 ORTHO05D002866 9.1e-116 422.5 954 37.6
Psat4g180280 Pisum sativum HOM05D002270 ORTHO05D002866 1.2e-115 422.2 952 34.5
DCAR_014031 Daucus carota HOM05D002270 ORTHO05D002866 5.9e-115 419.9 1014 33.2
PSO144G0138 Papaver somniferum HOM05D002270 ORTHO05D002866 7.7e-115 419.5 1016 34.3
Zm00001eb290580 Zea mays HOM05D002270 ORTHO05D002866 3.2e-113 414.1 1017 33.6
Pp3c8_22130 Physcomitrium patens HOM05D002270 ORTHO05D002866 7.2e-113 412.9 877 40.5
Lsat_1_v5_gn_4_95020 Lactuca sativa HOM05D002270 ORTHO05D002866 1.2e-112 412.1 1020 34.7
FAN05G0510 Fragaria x ananassa HOM05D002270 ORTHO05D002866 6.1e-112 409.8 931 39.5
AUR62001507 Chenopodium quinoa HOM05D002270 ORTHO05D002866 2.3e-111 407.9 970 39.0
VMungo0464G0658 Vigna mungo HOM05D002270 ORTHO05D002866 1.1e-110 405.6 846 35.5
AUR62009863 Chenopodium quinoa HOM05D002270 ORTHO05D002866 1.5e-110 405.2 965 38.3
FAN02G3927 Fragaria x ananassa HOM05D002270 ORTHO05D002866 2.6e-110 404.4 928 39.9
Medtr8g018890 Medicago truncatula HOM05D002270 ORTHO05D002866 9.7e-110 402.5 943 33.2
unitig_22.g5235 Utricularia gibba HOM05D002270 ORTHO05D002866 3.1e-108 397.5 989 35.3
EL10Ac7g16387 Beta vulgaris HOM05D002270 ORTHO05D002866 1.0e-106 392.5 1004 34.8
Carub.0002s1342 Capsella rubella HOM05D002270 ORTHO05D002866 1.0e-106 392.5 950 36.4
AT1G67120 Arabidopsis thaliana HOM05D002270 ORTHO05D002866 2.2e-106 391.3 928 34.6
Rhsim08G0236800 Rhododendron simsii HOM05D002270 ORTHO05D002866 1.2e-104 385.6 990 32.0
Carub.0002s1105 Capsella rubella HOM05D002270 ORTHO05D002866 1.6e-104 385.2 941 36.5
AL2G25500 Arabidopsis lyrata HOM05D002270 ORTHO05D002866 2.1e-104 384.8 930 33.9
Aa31LG2G3520 Aethionema arabicum HOM05D002270 ORTHO05D002866 2.7e-104 384.4 932 33.9
Ah.08g216550 Amaranthus hybridus HOM05D002270 ORTHO05D002866 2.7e-104 384.4 929 32.9
Sp5g22050 Schrenkiella parvula HOM05D002270 ORTHO05D002866 1.0e-103 382.5 943 34.4
Thhalv10017991m.g Eutrema salsugineum HOM05D002270 ORTHO05D002866 8.8e-103 379.4 934 36.5
QL03p018747 Quercus lobata HOM05D002270 ORTHO05D002866 2.7e-96 357.8 878 33.7
BolC2t08403H Brassica oleracea HOM05D002270 ORTHO05D002866 1.4e-95 355.5 936 34.6
C02p22490 Brassica napus HOM05D002270 ORTHO05D002866 5.2e-95 353.6 942 32.8
Hma1.2p1_0291F.1_g115290 Hydrangea macrophylla HOM05D002270 ORTHO05D002866 1.7e-93 348.6 483 45.1
CARHR059570 Cardamine hirsuta HOM05D002270 ORTHO05D002866 1.4e-92 345.5 946 33.2
BraA02t06460Z Brassica rapa HOM05D002270 ORTHO05D002866 5.0e-90 337.0 941 34.5
A02p14000 Brassica napus HOM05D002270 ORTHO05D002866 6.5e-90 336.7 941 34.5
Os10g0456900 Oryza sativa ssp. japonica HOM05D002270 ORTHO05D002866 5.5e-89 333.6 470 44.5
BcaNung06980 Brassica carinata HOM05D002270 ORTHO05D002866 1.0e-87 329.3 927 36.9
FAN09G1018 Fragaria x ananassa HOM05D002270 ORTHO05D002866 8.3e-85 319.7 716 35.5
CDE12G0817 Ceratophyllum demersum HOM05D002270 ORTHO05D002866 2.7e-83 314.7 338 52.7
CBR_g741 Chara braunii HOM05D002270 ORTHO05D002866 3.4e-78 297.7 1039 32.4
Eucgr.J02835 Eucalyptus grandis HOM05D002270 ORTHO05D002866 3.4e-78 297.7 208 68.8
COL.COLO4_12564 Corchorus olitorius HOM05D002270 ORTHO05D002866 7.5e-78 296.6 204 69.1
Sed0006033 Sechium edule HOM05D002270 ORTHO05D002866 1.1e-76 292.7 205 67.8
TAR636G2258 Trochodendron aralioides HOM05D002270 ORTHO05D002866 1.2e-67 262.7 177 69.5
TAR636G2809 Trochodendron aralioides HOM05D002270 ORTHO05D002866 6.4e-61 240.4 714 30.0
PRCOL_00003697 Prasinoderma coloniale HOM05D002270 ORTHO05D002866 3.5e-59 234.6 1080 28.8
MCO14G006 Micromonas commoda HOM05D002270 ORTHO05D002866 1.6e-56 225.7 206 54.4
VMungo1080G1592 Vigna mungo HOM05D002270 ORTHO05D002866 2.1e-56 225.3 188 61.2
Cre03.g161800 Chlamydomonas reinhardtii HOM05D002270 ORTHO05D002866 1.9e-52 212.2 1022 30.4
Aqoxy6G02932 Aquilegia oxysepala HOM05D002270 ORTHO05D002866 2.4e-52 211.8 144 67.4
BcaC07g41079 Brassica carinata HOM05D002270 ORTHO05D002866 1.5e-49 202.6 201 51.7
Cpa.g.sc1872.2 Carica papaya HOM05D002270 ORTHO05D002866 1.1e-44 186.4 367 36.2
TPR.G51 Trifolium pratense HOM05D002270 ORTHO05D002866 9.2e-44 183.3 132 66.7
Eucgr.J02836 Eucalyptus grandis HOM05D002270 ORTHO05D002866 1.2e-43 183.0 658 30.5
COL.COLO4_12565 Corchorus olitorius HOM05D002270 ORTHO05D002866 7.6e-38 163.7 243 45.3
SMO141G0258 Selaginella moellendorffii HOM05D002270 ORTHO05D002866 1.3e-37 162.9 93 82.8
BcaB03g13736 Brassica carinata HOM05D002270 ORTHO05D002866 8.7e-34 150.2 135 51.9
CDE12G0087 Ceratophyllum demersum HOM05D002270 ORTHO05D002866 1.7e-29 136.0 593 25.0
SMO141G0084 Selaginella moellendorffii HOM05D002270 ORTHO05D002866 2.9e-29 135.2 81 76.5
PGSC0003DMG400044228 Solanum tuberosum HOM05D002270 ORTHO05D002866 7.4e-25 120.6 412 31.3
Medtr8g019250 Medicago truncatula HOM05D002270 ORTHO05D002866 2.1e-24 119.0 81 66.7
TPR.G10921 Trifolium pratense HOM05D002270 ORTHO05D002866 3.7e-24 118.2 493 28.4
Aqoxy6G02934 Aquilegia oxysepala HOM05D002270 ORTHO05D002866 7.6e-22 110.5 224 35.7
C05p38590 Brassica napus HOM05D002270 ORTHO05D002866 8.4e-21 107.1 262 32.4
BolC5t32597H Brassica oleracea HOM05D002270 ORTHO05D002866 8.4e-21 107.1 262 32.4
TPR.G9775 Trifolium pratense HOM05D002270 ORTHO05D002866 2.5e-20 105.5 604 25.7
ECA067G0003 Erigeron canadensis HOM05D002270 ORTHO05D002866 5.5e-20 104.4 802 23.4
TPR.G582 Trifolium pratense HOM05D002270 ORTHO05D002866 3.9e-18 98.2 70 62.9
BcaC05g27863 Brassica carinata HOM05D002270 ORTHO05D002866 6.7e-18 97.4 311 30.2
Cpa.g.sc30.6 Carica papaya HOM05D002270 ORTHO05D002866 4.5e-14 84.7 173 35.3
PSO210G4815 Papaver somniferum HOM05D002270 ORTHO05D002866 2.9e-13 82.0 375 31.5
Aqoxy6G02933 Aquilegia oxysepala HOM05D002270 ORTHO05D002866 1.5e-06 59.7 173 31.8
SMO141G0255 Selaginella moellendorffii HOM05D002270 ORTHO05D002866 2.0e-06 59.3 117 45.3
Cre02.g095550 Chlamydomonas reinhardtii HOM05D053512 ORTHO05D012763 1.0e-05 57.0 174 26.4


User provided reference genes

Program Settings