Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SEGI_24407 Sequoiadendron giganteum HOM05D004789 ORTHO05D006078 5.4e-59 230.7 110 100.0
SEGI_29409 Sequoiadendron giganteum HOM05D004789 ORTHO05D006078 2.1e-23 112.5 111 53.2
CDE05G3244 Ceratophyllum demersum HOM05D004789 ORTHO05D006078 1.1e-22 110.2 98 55.1
Pp3c21_670 Physcomitrium patens HOM05D004789 ORTHO05D006078 2.4e-22 109.0 99 52.5
AUR62000303 Chenopodium quinoa HOM05D004789 ORTHO05D006078 6.8e-22 107.5 100 55.0
AUR62006648 Chenopodium quinoa HOM05D004789 ORTHO05D006078 6.8e-22 107.5 103 53.4
Pp3c19_9150 Physcomitrium patens HOM05D004789 ORTHO05D006078 6.8e-22 107.5 99 52.5
SMO141G0244 Selaginella moellendorffii HOM05D004789 ORTHO05D006078 8.9e-22 107.1 99 50.5
MBI11_g05799_MAGBIO Magnolia biondii HOM05D004789 ORTHO05D006078 1.5e-21 106.3 111 49.5
EL10Ac4g09992 Beta vulgaris HOM05D004789 ORTHO05D006078 2.0e-21 105.9 100 54.0
BcaC01g01832 Brassica carinata HOM05D004789 ORTHO05D006078 2.0e-21 105.9 99 52.5
A06p20290 Brassica napus HOM05D004789 ORTHO05D006078 2.0e-21 105.9 99 52.5
C03p71470 Brassica napus HOM05D004789 ORTHO05D006078 2.0e-21 105.9 99 52.5
BolC3t19438H Brassica oleracea HOM05D004789 ORTHO05D006078 2.0e-21 105.9 99 52.5
BraA06t25110Z Brassica rapa HOM05D004789 ORTHO05D006078 2.0e-21 105.9 99 52.5
Mapoly0151s0033 Marchantia polymorpha HOM05D004789 ORTHO05D006078 2.0e-21 105.9 99 51.5
ATR0661G474 Amborella trichopoda HOM05D004789 ORTHO05D006078 2.6e-21 105.5 98 52.0
Pp3c9_9570 Physcomitrium patens HOM05D004789 ORTHO05D006078 2.6e-21 105.5 99 51.5
Aqoxy2G01476 Aquilegia oxysepala HOM05D004789 ORTHO05D006078 3.4e-21 105.1 98 52.0
BcaB01g00932 Brassica carinata HOM05D004789 ORTHO05D006078 3.4e-21 105.1 99 52.5
PSO017G6674 Papaver somniferum HOM05D004789 ORTHO05D006078 3.4e-21 105.1 98 52.0
Zm00001eb240960 Zea mays HOM05D004789 ORTHO05D006078 3.4e-21 105.1 98 52.0
Thhalv10010225m.g Eutrema salsugineum HOM05D004789 ORTHO05D006078 4.4e-21 104.8 99 51.5
Os02g0473000 Oryza sativa ssp. japonica HOM05D004789 ORTHO05D006078 4.4e-21 104.8 98 52.0
AagrBONN_evm.TU.Sc2ySwM_117.447 Anthoceros agrestis HOM05D004789 ORTHO05D006078 5.8e-21 104.4 99 52.5
CBR_g21226 Chara braunii HOM05D004789 ORTHO05D006078 7.6e-21 104.0 98 52.0
Sp5g14500 Schrenkiella parvula HOM05D004789 ORTHO05D006078 7.6e-21 104.0 99 51.5
Gohir.A08G226100 Gossypium hirsutum HOM05D004789 ORTHO05D006078 9.9e-21 103.6 98 52.0
PSO675G5907 Papaver somniferum HOM05D004789 ORTHO05D006078 9.9e-21 103.6 98 51.0
Medtr7g080117 Medicago truncatula HOM05D004789 ORTHO05D006078 1.7e-20 102.8 98 51.0
SEGI_33759 Sequoiadendron giganteum HOM05D004789 ORTHO05D006078 1.7e-20 102.8 97 52.6
Aa31sc60G10 Aethionema arabicum HOM05D004789 ORTHO05D006078 2.2e-20 102.4 99 51.5
MD13G1061000 Malus domestica HOM05D004789 ORTHO05D006078 2.2e-20 102.4 98 50.0
HPP92_008120 Vanilla planifolia HOM05D004789 ORTHO05D006078 2.2e-20 102.4 97 52.6
THA.LOC104801872 Tarenaya hassleriana HOM05D004789 ORTHO05D006078 2.9e-20 102.1 99 50.5
AL5G26580 Arabidopsis lyrata HOM05D004789 ORTHO05D006078 3.8e-20 101.7 99 50.5
CARHR156030 Cardamine hirsuta HOM05D004789 ORTHO05D006078 3.8e-20 101.7 99 50.5
Ca_07992_v3 Cicer arietinum L. HOM05D004789 ORTHO05D006078 3.8e-20 101.7 98 51.0
Phvul.008G053900 Phaseolus vulgaris HOM05D004789 ORTHO05D006078 3.8e-20 101.7 98 50.0
Ah.06g195430 Amaranthus hybridus HOM05D004789 ORTHO05D006078 4.9e-20 101.3 100 51.0
Haze_04568 Corylus avellana HOM05D004789 ORTHO05D006078 4.9e-20 101.3 97 51.5
Gorai.004G263000 Gossypium raimondii HOM05D004789 ORTHO05D006078 4.9e-20 101.3 98 51.0
Pp3c15_7710 Physcomitrium patens HOM05D004789 ORTHO05D006078 4.9e-20 101.3 99 46.5
Aa31csc271G10 Aethionema arabicum HOM05D004789 ORTHO05D006078 6.4e-20 100.9 98 51.0
AT3G47390 Arabidopsis thaliana HOM05D004789 ORTHO05D006078 6.4e-20 100.9 99 49.5
CAN.G1807.2 Capsicum annuum HOM05D004789 ORTHO05D006078 6.4e-20 100.9 98 51.0
MD04G1245400 Malus domestica HOM05D004789 ORTHO05D006078 6.4e-20 100.9 98 50.0
Aa31sc348G30 Aethionema arabicum HOM05D004789 ORTHO05D006078 8.4e-20 100.5 98 50.0
CANSAT54G2477 Cannabis sativa HOM05D004789 ORTHO05D006078 8.4e-20 100.5 98 51.0
Duzib106G1853 Durio zibethinus HOM05D004789 ORTHO05D006078 8.4e-20 100.5 105 46.7
Eucgr.C00113 Eucalyptus grandis HOM05D004789 ORTHO05D006078 8.4e-20 100.5 98 49.0
Gohir.D08G246500 Gossypium hirsutum HOM05D004789 ORTHO05D006078 8.4e-20 100.5 98 51.0
Nn1g09737 Nelumbo nucifera HOM05D004789 ORTHO05D006078 8.4e-20 100.5 110 46.4
Hund07352 Selenicereus undatus HOM05D004789 ORTHO05D006078 8.4e-20 100.5 98 49.0
VMungo1383G0580 Vigna mungo HOM05D004789 ORTHO05D006078 8.4e-20 100.5 98 49.0
CSS0025571 Camellia sinensis var. sinensis HOM05D004789 ORTHO05D006078 1.1e-19 100.1 98 50.0
CSS0046891 Camellia sinensis var. sinensis HOM05D004789 ORTHO05D006078 1.1e-19 100.1 98 50.0
Peaxi162Scf00048g00311 Petunia axillaris HOM05D004789 ORTHO05D006078 1.1e-19 100.1 98 52.0
Prupe.6G362000 Prunus persica HOM05D004789 ORTHO05D006078 1.1e-19 100.1 98 50.0
Manes.12G005100 Manihot esculenta HOM05D004789 ORTHO05D006078 1.4e-19 99.8 98 48.0
TPR.G10693 Trifolium pratense HOM05D004789 ORTHO05D006078 1.4e-19 99.8 98 50.0
Carub.0005s1348 Capsella rubella HOM05D004789 ORTHO05D006078 1.9e-19 99.4 99 48.5
PGR083G2717 Punica granatum HOM05D004789 ORTHO05D006078 1.9e-19 99.4 98 49.0
PGR092G0005 Punica granatum HOM05D004789 ORTHO05D006078 1.9e-19 99.4 98 49.0
Thecc.05G194100 Theobroma cacao HOM05D004789 ORTHO05D006078 1.9e-19 99.4 98 49.0
MELO3C010050.2 Cucumis melo HOM05D004789 ORTHO05D006078 2.4e-19 99.0 98 48.0
CsaV3_1G044470 Cucumis sativus L. HOM05D004789 ORTHO05D006078 2.4e-19 99.0 98 48.0
vmacro19979 Vaccinium macrocarpon HOM05D004789 ORTHO05D006078 2.4e-19 99.0 98 50.0
arahy.Tifrunner.gnm1.ann1.537LAH Arachis hypogaea HOM05D004789 ORTHO05D006078 3.2e-19 98.6 98 48.0
arahy.Tifrunner.gnm1.ann1.66TKXZ Arachis hypogaea HOM05D004789 ORTHO05D006078 3.2e-19 98.6 98 48.0
HanXRQChr06g0174041 Helianthus annuus HOM05D004789 ORTHO05D006078 3.2e-19 98.6 98 49.0
Rhsim05G0170800 Rhododendron simsii HOM05D004789 ORTHO05D006078 3.2e-19 98.6 98 50.0
Hund21904 Selenicereus undatus HOM05D004789 ORTHO05D006078 3.2e-19 98.6 98 46.9
Dinv29093 Davidia involucrata HOM05D004789 ORTHO05D006078 4.1e-19 98.2 98 50.0
Lalb_Chr03g0038671 Lupinus albus HOM05D004789 ORTHO05D006078 4.1e-19 98.2 98 46.9
Psat3g102920 Pisum sativum HOM05D004789 ORTHO05D006078 4.1e-19 98.2 98 49.0
Sabra19G0063100 Salix brachista HOM05D004789 ORTHO05D006078 4.1e-19 98.2 98 45.9
Sc16g0010430 Simmondsia chinensis HOM05D004789 ORTHO05D006078 4.1e-19 98.2 98 50.0
TAR626G0377 Trochodendron aralioides HOM05D004789 ORTHO05D006078 4.1e-19 98.2 110 47.3
Actinidia06832 Actinidia chinensis HOM05D004789 ORTHO05D006078 5.4e-19 97.8 98 49.0
FvH4_6g00440 Fragaria vesca HOM05D004789 ORTHO05D006078 5.4e-19 97.8 98 48.0
FAN09G1869 Fragaria x ananassa HOM05D004789 ORTHO05D006078 5.4e-19 97.8 98 48.0
Hma1.2p1_0609F.1_g188420 Hydrangea macrophylla HOM05D004789 ORTHO05D006078 5.4e-19 97.8 98 49.0
Hma1.2p1_0609F.1_g188430 Hydrangea macrophylla HOM05D004789 ORTHO05D006078 5.4e-19 97.8 98 49.0
Sed0025011 Sechium edule HOM05D004789 ORTHO05D006078 5.4e-19 97.8 98 46.9
Cre17.g728950 Chlamydomonas reinhardtii HOM05D004789 ORTHO05D006078 7.1e-19 97.4 99 47.5
Potri.019G054000 Populus trichocarpa HOM05D004789 ORTHO05D006078 7.1e-19 97.4 98 45.9
QL01p049601 Quercus lobata HOM05D004789 ORTHO05D006078 7.1e-19 97.4 101 46.5
RcHm_v2.0_Chr3g0447811 Rosa chinensis HOM05D004789 ORTHO05D006078 7.1e-19 97.4 98 46.9
PGR119G2005 Punica granatum HOM05D004789 ORTHO05D006078 9.2e-19 97.1 98 45.9
Sopen04g025480 Solanum pennellii HOM05D004789 ORTHO05D006078 9.2e-19 97.1 97 51.5
PGSC0003DMG400010518 Solanum tuberosum HOM05D004789 ORTHO05D006078 9.2e-19 97.1 97 51.5
ClCG03G010600 Citrullus lanatus HOM05D004789 ORTHO05D006078 1.2e-18 96.7 98 46.9
Glyma.09G249800 Glycine max HOM05D004789 ORTHO05D006078 1.2e-18 96.7 98 46.9
TWI36G0056 Tripterygium wilfordii HOM05D004789 ORTHO05D006078 1.2e-18 96.7 98 50.0
unitig_0.g1013 Utricularia gibba HOM05D004789 ORTHO05D006078 1.2e-18 96.7 98 51.0
COL.COLO4_38035 Corchorus olitorius HOM05D004789 ORTHO05D006078 1.6e-18 96.3 98 46.9
DCAR_020684 Daucus carota HOM05D004789 ORTHO05D006078 1.6e-18 96.3 98 49.0
Migut.F02116 Erythranthe guttata HOM05D004789 ORTHO05D006078 1.6e-18 96.3 98 50.0
SGA_v2.0_scaffold11G05812 Striga asiatica HOM05D004789 ORTHO05D006078 1.6e-18 96.3 98 51.0
MELO3C010048.2 Cucumis melo HOM05D004789 ORTHO05D006078 2.1e-18 95.9 98 43.9
Lsat_1_v5_gn_8_109000 Lactuca sativa HOM05D004789 ORTHO05D006078 2.1e-18 95.9 97 49.5
SalBow1G3031 Salvia bowleyana HOM05D004789 ORTHO05D006078 2.1e-18 95.9 98 50.0
GSVIVG01019077001 Vitis vinifera HOM05D004789 ORTHO05D006078 2.1e-18 95.9 98 48.0
Cpa.g.sc2508.1 Carica papaya HOM05D004789 ORTHO05D006078 2.7e-18 95.5 97 47.4
Ciclev10011346m.g Citrus clementina HOM05D004789 ORTHO05D006078 2.7e-18 95.5 98 46.9
PRCOL_00003473 Prasinoderma coloniale HOM05D004789 ORTHO05D006078 2.7e-18 95.5 90 51.1
Sed0000944 Sechium edule HOM05D004789 ORTHO05D006078 2.7e-18 95.5 98 45.9
Solyc04g056540.3 Solanum lycopersicum HOM05D004789 ORTHO05D006078 2.7e-18 95.5 97 49.5
Cc09_g03720 Coffea canephora HOM05D004789 ORTHO05D006078 4.6e-18 94.7 98 49.0
Lsat_1_v5_gn_3_24661 Lactuca sativa HOM05D004789 ORTHO05D006078 4.6e-18 94.7 98 46.9
Nitab4.5_0000083g0070 Nicotiana tabacum HOM05D004789 ORTHO05D006078 4.6e-18 94.7 97 48.5
Nitab4.5_0001435g0010 Nicotiana tabacum HOM05D004789 ORTHO05D006078 4.6e-18 94.7 97 48.5
SGA_v2.0_scaffold14G07118 Striga asiatica HOM05D004789 ORTHO05D006078 4.6e-18 94.7 98 51.0
CiPaw.07G081200 Carya illinoinensis HOM05D004789 ORTHO05D006078 6.0e-18 94.4 98 46.9
Glyma.18G242600 Glycine max HOM05D004789 ORTHO05D006078 6.0e-18 94.4 98 46.9
HanXRQChr06g0173981 Helianthus annuus HOM05D004789 ORTHO05D006078 1.0e-17 93.6 98 46.9
SMO145G0191 Selaginella moellendorffii HOM05D004789 ORTHO05D006078 1.0e-17 93.6 85 49.4
HanXRQChr17g0538711 Helianthus annuus HOM05D004789 ORTHO05D006078 1.3e-17 93.2 98 46.9
Oeu009739.1 Olea europaea HOM05D004789 ORTHO05D006078 2.3e-17 92.4 98 48.0
Lj1g0000623 Lotus japonicus HOM05D004789 ORTHO05D006078 8.7e-17 90.5 98 44.9
Lsat_1_v5_gn_7_32541 Lactuca sativa HOM05D004789 ORTHO05D006078 3.3e-16 88.6 99 45.5
Lj2C731T11 Lonicera japonica HOM05D004789 ORTHO05D006078 4.3e-16 88.2 90 48.9
Atru.BG.270.p Acer truncatum HOM05D004789 ORTHO05D006078 7.3e-16 87.4 98 46.9
SHI13715 Sapria himalayana HOM05D004789 ORTHO05D006078 2.1e-15 85.9 97 44.3
SEGI_28254 Sequoiadendron giganteum HOM05D004789 ORTHO05D006078 2.1e-15 85.9 72 65.3
Hund01450 Selenicereus undatus HOM05D004789 ORTHO05D006078 3.6e-15 85.1 99 42.4
Hund01346 Selenicereus undatus HOM05D004789 ORTHO05D006078 4.7e-15 84.7 97 43.3
Hund24180 Selenicereus undatus HOM05D004789 ORTHO05D006078 3.8e-12 75.1 81 44.4
Hund01197 Selenicereus undatus HOM05D004789 ORTHO05D006078 1.4e-11 73.2 81 44.4
MCO11G683 Micromonas commoda HOM05D004789 ORTHO05D006078 5.4e-11 71.2 99 38.4
ATR0804G049 Amborella trichopoda HOM05D004789 ORTHO05D006078 3.3e-08 62.0 66 51.5


User provided reference genes

Program Settings