Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SEGI_24162 Sequoiadendron giganteum HOM05D002102 ORTHO05D008242 2.9e-97 358.6 185 100.0
AagrBONN_evm.TU.Sc2ySwM_368.1584 Anthoceros agrestis HOM05D002102 ORTHO05D008242 6.1e-31 138.3 145 51.7
Pp3c15_7910 Physcomitrium patens HOM05D002102 ORTHO05D008242 1.4e-30 137.1 103 66.0
Mapoly0033s0150 Marchantia polymorpha HOM05D002102 ORTHO05D008242 2.3e-30 136.3 94 71.3
QL11p010809 Quercus lobata HOM05D002102 ORTHO05D008242 2.8e-28 129.4 128 53.9
HPP92_001768 Vanilla planifolia HOM05D001389 ORTHO05D002892 2.0e-26 123.2 111 59.5
Nn7g38425 Nelumbo nucifera HOM05D002102 ORTHO05D008242 4.5e-26 122.1 117 56.4
TWI63G1577 Tripterygium wilfordii HOM05D002102 ORTHO05D008242 1.0e-25 120.9 92 63.0
CsaV3_6G053190 Cucumis sativus L. HOM05D002102 ORTHO05D008242 1.3e-25 120.6 132 49.2
Aqoxy1G01357 Aquilegia oxysepala HOM05D002102 ORTHO05D008242 1.7e-25 120.2 116 56.0
Migut.M02036 Erythranthe guttata HOM05D002102 ORTHO05D008242 2.2e-25 119.8 101 57.4
Sed0010823 Sechium edule HOM05D002102 ORTHO05D008242 2.9e-25 119.4 108 57.4
Sc24g0002820 Simmondsia chinensis HOM05D002102 ORTHO05D008242 5.0e-25 118.6 92 64.1
CANSAT35G0655 Cannabis sativa HOM05D002102 ORTHO05D008242 6.5e-25 118.2 142 49.3
Oeu023527.1 Olea europaea HOM05D002102 ORTHO05D008242 8.5e-25 117.9 106 56.6
Ca_22534_v3 Cicer arietinum L. HOM05D002102 ORTHO05D008242 1.5e-24 117.1 120 52.5
Glyma.16G094300 Glycine max HOM05D002102 ORTHO05D008242 1.5e-24 117.1 147 47.6
CSS0016773 Camellia sinensis var. sinensis HOM05D002102 ORTHO05D008242 2.5e-24 116.3 120 53.3
Psat0s2609g0120 Pisum sativum HOM05D002102 ORTHO05D008242 2.5e-24 116.3 92 63.0
Cpa.g.sc30.78 Carica papaya HOM05D002102 ORTHO05D008242 5.5e-24 115.2 113 53.1
Atru.chr10.236 Acer truncatum HOM05D002102 ORTHO05D008242 7.2e-24 114.8 92 60.9
HanXRQChr09g0257721 Helianthus annuus HOM05D002102 ORTHO05D008242 7.2e-24 114.8 92 59.8
Lsat_1_v5_gn_8_106940 Lactuca sativa HOM05D002102 ORTHO05D008242 7.2e-24 114.8 92 59.8
CiPaw.09G140600 Carya illinoinensis HOM05D002102 ORTHO05D008242 9.4e-24 114.4 94 59.6
COL.COLO4_25027 Corchorus olitorius HOM05D002102 ORTHO05D008242 9.4e-24 114.4 92 62.0
GSVIVG01037088001 Vitis vinifera HOM05D002102 ORTHO05D008242 9.4e-24 114.4 111 54.1
ECA232G0416 Erigeron canadensis HOM05D002102 ORTHO05D008242 1.2e-23 114.0 97 58.8
Manes.03G073000 Manihot esculenta HOM05D002102 ORTHO05D008242 1.2e-23 114.0 92 56.5
Os01g0798500 Oryza sativa ssp. japonica HOM05D002102 ORTHO05D008242 1.2e-23 114.0 92 63.0
PGR004G2223 Punica granatum HOM05D002102 ORTHO05D008242 1.2e-23 114.0 156 42.3
TPR.G19825 Trifolium pratense HOM05D002102 ORTHO05D008242 1.2e-23 114.0 92 65.2
Ah.06g191610 Amaranthus hybridus HOM05D002851 ORTHO05D003084 2.1e-23 113.2 112 53.6
Lj4g0016411 Lotus japonicus HOM05D002102 ORTHO05D008242 2.1e-23 113.2 117 51.3
Peaxi162Scf00313g00048 Petunia axillaris HOM05D002102 ORTHO05D008242 2.1e-23 113.2 126 49.2
TAR627G1208 Trochodendron aralioides HOM05D002102 ORTHO05D008242 2.1e-23 113.2 114 55.3
PGSC0003DMG402011260 Solanum tuberosum HOM05D002102 ORTHO05D008242 2.7e-23 112.8 120 48.3
Actinidia34700 Actinidia chinensis HOM05D002102 ORTHO05D008242 3.6e-23 112.5 112 52.7
MELO3C006996.2 Cucumis melo HOM05D002102 ORTHO05D008242 3.6e-23 112.5 126 46.8
BcaB07g30508 Brassica carinata HOM05D002102 ORTHO05D008242 4.7e-23 112.1 97 58.8
PSO675G4370 Papaver somniferum HOM05D002102 ORTHO05D008242 4.7e-23 112.1 93 59.1
Sp2g09460 Schrenkiella parvula HOM05D002102 ORTHO05D008242 4.7e-23 112.1 97 58.8
vmacro11020 Vaccinium macrocarpon HOM05D002102 ORTHO05D008242 4.7e-23 112.1 94 58.5
Ciclev10016300m.g Citrus clementina HOM05D002102 ORTHO05D008242 6.1e-23 111.7 92 58.7
Rhsim02G0171500 Rhododendron simsii HOM05D002102 ORTHO05D008242 6.1e-23 111.7 92 59.8
Solyc10g005180.3 Solanum lycopersicum HOM05D002102 ORTHO05D008242 6.1e-23 111.7 130 48.5
CDE11G0809 Ceratophyllum demersum HOM05D002102 ORTHO05D008242 8.0e-23 111.3 107 54.2
Eucgr.E03887 Eucalyptus grandis HOM05D002102 ORTHO05D008242 8.0e-23 111.3 136 49.3
FvH4_3g13341 Fragaria vesca HOM05D002102 ORTHO05D008242 8.0e-23 111.3 93 61.3
FAN11G2372 Fragaria x ananassa HOM05D002102 ORTHO05D008242 8.0e-23 111.3 93 61.3
Gohir.A03G218300 Gossypium hirsutum HOM05D002102 ORTHO05D008242 8.0e-23 111.3 105 53.3
Gohir.D02G240400 Gossypium hirsutum HOM05D002102 ORTHO05D008242 8.0e-23 111.3 105 53.3
Gorai.005G268700 Gossypium raimondii HOM05D002102 ORTHO05D008242 8.0e-23 111.3 105 53.3
Potri.001G074200 Populus trichocarpa HOM05D002102 ORTHO05D008242 8.0e-23 111.3 92 58.7
AL8G14900 Arabidopsis lyrata HOM05D002102 ORTHO05D008242 1.0e-22 110.9 97 57.7
CARHR178230 Cardamine hirsuta HOM05D002102 ORTHO05D008242 1.0e-22 110.9 109 52.3
Cc09_g04620 Coffea canephora HOM05D002102 ORTHO05D008242 1.0e-22 110.9 113 48.7
Haze_05188 Corylus avellana HOM05D002102 ORTHO05D008242 1.0e-22 110.9 92 59.8
EL10Ac4g09967 Beta vulgaris HOM05D002102 ORTHO05D008242 1.4e-22 110.5 92 57.6
Sopen10g001170 Solanum pennellii HOM05D002102 ORTHO05D008242 1.4e-22 110.5 130 47.7
FAN25G3128 Fragaria x ananassa HOM05D002102 ORTHO05D008242 1.8e-22 110.2 93 60.2
Carub.0008s0361 Capsella rubella HOM05D002102 ORTHO05D008242 2.3e-22 109.8 97 55.7
PSO170G6365 Papaver somniferum HOM05D002102 ORTHO05D008242 2.3e-22 109.8 93 58.1
arahy.Tifrunner.gnm1.ann1.N8G6CJ Arachis hypogaea HOM05D002102 ORTHO05D008242 3.0e-22 109.4 91 58.2
BcaC06g31600 Brassica carinata HOM05D002102 ORTHO05D008242 3.0e-22 109.4 97 56.7
Thhalv10000983m.g Eutrema salsugineum HOM05D002102 ORTHO05D008242 3.0e-22 109.4 97 56.7
RcHm_v2.0_Chr5g0021821 Rosa chinensis HOM05D002102 ORTHO05D008242 3.0e-22 109.4 93 59.1
Glyma.08G267700 Glycine max HOM05D002102 ORTHO05D008242 4.0e-22 109.0 135 45.2
Nitab4.5_0001299g0100 Nicotiana tabacum HOM05D002102 ORTHO05D008242 4.0e-22 109.0 89 58.4
Nitab4.5_0002246g0020 Nicotiana tabacum HOM05D002102 ORTHO05D008242 4.0e-22 109.0 89 58.4
AT5G44650 Arabidopsis thaliana HOM05D002102 ORTHO05D008242 5.2e-22 108.6 97 55.7
arahy.Tifrunner.gnm1.ann1.1TYS6L Arachis hypogaea HOM05D002102 ORTHO05D008242 5.2e-22 108.6 91 58.2
FAN16G2960 Fragaria x ananassa HOM05D002102 ORTHO05D008242 5.2e-22 108.6 93 59.1
Medtr8g070680 Medicago truncatula HOM05D002102 ORTHO05D008242 5.2e-22 108.6 91 60.4
Zm00001eb150810 Zea mays HOM05D002102 ORTHO05D008242 5.2e-22 108.6 92 59.8
Sabra01G0052500 Salix brachista HOM05D002102 ORTHO05D008242 6.7e-22 108.2 92 55.4
BcaC06g34527 Brassica carinata HOM05D002102 ORTHO05D008242 2.0e-21 106.7 97 55.7
C07p27540 Brassica napus HOM05D002102 ORTHO05D008242 2.0e-21 106.7 97 55.7
BolC7t43285H Brassica oleracea HOM05D002102 ORTHO05D008242 2.0e-21 106.7 97 55.7
Phvul.003G275400 Phaseolus vulgaris HOM05D002102 ORTHO05D008242 2.0e-21 106.7 131 49.6
Thecc.02G001200 Theobroma cacao HOM05D002102 ORTHO05D008242 2.0e-21 106.7 90 57.8
A06p47030 Brassica napus HOM05D002102 ORTHO05D008242 2.6e-21 106.3 97 55.7
Lalb_Chr21g0315091 Lupinus albus HOM05D002102 ORTHO05D008242 2.6e-21 106.3 126 48.4
ClCG01G025950 Citrullus lanatus HOM05D002102 ORTHO05D008242 3.3e-21 105.9 107 48.6
DCAR_001256 Daucus carota HOM05D002102 ORTHO05D008242 5.7e-21 105.1 81 60.5
BraA06t27576Z Brassica rapa HOM05D002102 ORTHO05D008242 7.5e-21 104.8 96 55.2
MD10G1224400 Malus domestica HOM05D002102 ORTHO05D008242 1.7e-20 103.6 110 50.9
Aa31LG9G8520 Aethionema arabicum HOM05D002102 ORTHO05D008242 2.2e-20 103.2 97 53.6
unitig_92.g28193 Utricularia gibba HOM05D002594 ORTHO05D003499 5.3e-19 98.6 84 57.1
RcHm_v2.0_Chr5g0021891 Rosa chinensis HOM05D002102 ORTHO05D008242 1.0e-17 94.4 84 57.1
HPP92_001585 Vanilla planifolia HOM05D002102 ORTHO05D008242 2.2e-17 93.2 68 64.7
Prupe.4G120800 Prunus persica HOM05D002102 ORTHO05D008242 2.9e-17 92.8 93 51.6
Dinv17885 Davidia involucrata HOM05D002102 ORTHO05D008242 6.5e-17 91.7 71 56.3
CBR_g21832 Chara braunii HOM05D002102 ORTHO05D008242 1.5e-16 90.5 86 59.3
PGSC0003DMG401011260 Solanum tuberosum HOM05D002102 ORTHO05D008242 1.5e-16 90.5 71 56.3
Cre06.g280650 Chlamydomonas reinhardtii HOM05D002102 ORTHO05D008242 3.2e-16 89.4 96 49.0
AUR62040994 Chenopodium quinoa HOM05D002102 ORTHO05D008242 9.4e-16 87.8 65 60.0
AUR62042810 Chenopodium quinoa HOM05D002102 ORTHO05D008242 2.1e-15 86.7 65 60.0
RcHm_v2.0_Chr5g0021971 Rosa chinensis HOM05D002102 ORTHO05D008242 6.1e-15 85.1 72 61.1
Eucgr.L03440 Eucalyptus grandis HOM05D002102 ORTHO05D008242 4.0e-14 82.4 111 49.5
ATR0073G005 Amborella trichopoda HOM05D002102 ORTHO05D008242 3.4e-13 79.3 69 56.5
MBI02_g17886_MAGBIO Magnolia biondii HOM05D002102 ORTHO05D008242 4.4e-13 79.0 104 45.2
Oeu011782.1 Olea europaea HOM05D002102 ORTHO05D008242 9.8e-13 77.8 70 50.0
Duzib132G0691 Durio zibethinus HOM05D002102 ORTHO05D008242 2.8e-12 76.3 97 47.4
SGA_v2.0_scaffold423G51451 Striga asiatica HOM05D002102 ORTHO05D008242 6.3e-12 75.1 79 49.4
PSO541G0118 Papaver somniferum HOM05D002102 ORTHO05D008242 1.4e-11 73.9 65 58.5
FAN21G2948 Fragaria x ananassa HOM05D002102 ORTHO05D008242 1.8e-11 73.6 65 60.0
Hund01844 Selenicereus undatus HOM05D002102 ORTHO05D008242 1.8e-11 73.6 65 55.4
Lj1A1152G38 Lonicera japonica HOM05D002102 ORTHO05D008242 3.5e-10 69.3 65 47.7
Actinidia31356 Actinidia chinensis HOM05D002102 ORTHO05D008242 1.9e-08 63.5 78 48.7
MD05G1242600 Malus domestica HOM05D002102 ORTHO05D008242 2.8e-07 59.7 64 51.6


User provided reference genes

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